mRNA_Ecto-sp8_S_contig96470.31335.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96470.31335.1
Unique NamemRNA_Ecto-sp8_S_contig96470.31335.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: D7FSC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC3_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.070e-25
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +VAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR
Sbjct:  659 KVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 709
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: D7FSC4_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.770e-21
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +VAFVQTPQRFR +L +DPLGNHA SQYDVIN GKDGIGAVSSSGQGSLWR
Sbjct:  446 KVAFVQTPQRFRKDLPDDPLGNHAASQYDVINIGKDGIGAVSSSGQGSLWR 496
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835YSM9_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.180e-19
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRM-ELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +VAFVQTPQRF+  + ++DPLGNHA  QYDVINHGKDGIGAVSSSGQGSLWR
Sbjct:  449 KVAFVQTPQRFQTNQQADDPLGNHAAVQYDVINHGKDGIGAVSSSGQGSLWR 500
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A836CP13_9STRA (Glyco_trans_2-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP13_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.150e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRMEL-SNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +VAFVQTPQRF   + ++DPLGNHA  QYDVINHGKDGIGAVSSSGQGSLWR
Sbjct:  704 KVAFVQTPQRFTNNVQADDPLGNHAAVQYDVINHGKDGIGAVSSSGQGSLWR 755
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835YHN4_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHN4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.910e-17
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRMELS-NDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +VAFVQTPQRF  +   +DPLGNHA  QYDVINHGKDGIGAV SSG GSLWR
Sbjct:  416 KVAFVQTPQRFPFQKEKDDPLGNHAAMQYDVINHGKDGIGAVGSSGHGSLWR 467
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835YVP7_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.550e-17
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRMELS--NDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +VAFVQTPQRF  +++  +DPLGN+A  QYD+INHGKDGIGAVSSSG GSLWR
Sbjct:  368 RVAFVQTPQRFPKDMNAEDDPLGNNAAVQYDIINHGKDGIGAVSSSGHGSLWR 420
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835ZCE1_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.060e-17
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRMELS--NDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +VAFVQTPQRF+ +    +DPLGNHA  QYDVIN GKDGIGAVSSSG GSLWR
Sbjct:  598 RVAFVQTPQRFKPDQMTLDDPLGNHAAVQYDVINRGKDGIGAVSSSGHGSLWR 650
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: D8LMC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.400e-11
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   13 VAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            V FVQTPQRF      DPLGNHA+  + V N  KDG+G V+S GQGSLWR
Sbjct: 1178 VGFVQTPQRFEDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWR 1227
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835Z722_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z722_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.980e-10
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +V FVQTPQRF+ +   DPL N    ++++ N GKDG GAV+S GQGS+WR
Sbjct:  444 KVCFVQTPQRFKDDGIGDPLANWGTVKFNITNIGKDGAGAVTSCGQGSVWR 494
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BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835Z7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.870e-9
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   10 QVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 162
            +V FVQTPQRF+ +   +PL N    ++++ N GKDG GAV+S GQG++WR
Sbjct:  624 KVCFVQTPQRFKDDGIGNPLANWGAVKFNITNVGKDGAGAVTSCGQGAVWR 674
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FSC3_ECTSI1.070e-2598.04Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
D7FSC4_ECTSI5.770e-2186.27Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A835YSM9_9STRA6.180e-1980.77Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A836CP13_9STRA1.150e-1880.77Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A835YHN4_9STRA1.910e-1776.92Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YVP7_9STRA3.550e-1773.58Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835ZCE1_9STRA9.060e-1775.47Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
D8LMC3_ECTSI2.400e-1162.00Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A835Z722_9STRA3.980e-1054.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7S9_9STRA4.870e-950.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96470contigEcto-sp8_S_contig96470:2..163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score92.8
Seed ortholog evalue5.2e-17
Seed eggNOG ortholog2880.D7FSC4
Model size162
KEGG rclassRC00005
KEGG koko:K00694,ko:K10999,ko:K20924
KEGG TC4.D.3.1.2,4.D.3.1.4,4.D.3.1.5,4.D.3.1.6,4.D.3.1.7,4.D.3.1.9
KEGG ReactionR02889
KEGG Pathwayko00500,ko01100,ko02026,map00500,map01100,map02026
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005938,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009653,GO:0009987,GO:0010927,GO:0016020,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016759,GO:0016760,GO:0022607,GO:0030154,GO:0030243,GO:0030244,GO:0030435,GO:0030587,GO:0031150,GO:0031154,GO:0032502,GO:0032989,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0042244,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0045177,GO:0045179,GO:0045229,GO:0046527,GO:0048646,GO:0048856,GO:0048869,GO:0051273,GO:0051274,GO:0051703,GO:0051704,GO:0070590,GO:0070726,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090702,GO:0099120,GO:0099568,GO:0099738,GO:1901576
Exons1
EggNOG free text desc.Cellulose synthase
EggNOG OGs2QQSH@2759,COG1215@1
EC2.4.1.12
Cds size162
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145328.8297648-CDS-Ecto-sp8_S_contig96470:1..1631681145328.8297648-CDS-Ecto-sp8_S_contig96470:1..163Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96470 2..163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96470.31335.1prot_Ecto-sp8_S_contig96470.31335.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96470 2..163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96470.31335.1

>prot_Ecto-sp8_S_contig96470.31335.1 ID=prot_Ecto-sp8_S_contig96470.31335.1|Name=mRNA_Ecto-sp8_S_contig96470.31335.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
RSFQVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQG
SLWR
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mRNA from alignment at Ecto-sp8_S_contig96470:2..163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96470.31335.1 ID=mRNA_Ecto-sp8_S_contig96470.31335.1|Name=mRNA_Ecto-sp8_S_contig96470.31335.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96470:2..163- (Ectocarpus species8 EcLAC_412)
CGTTCCTTTCAGGTGGCGTTCGTGCAGACCCCGCAGCGTTTCCGCATGGA
GCTCAGCAACGACCCCCTCGGCAACCACGCCATCTCTCAGTACGACGTCA
TCAACCACGGGAAGGACGGGATCGGCGCCGTTTCTTCGAGTGGACAGGGC
AGCCTGTGGCGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96470:2..163-

>mRNA_Ecto-sp8_S_contig96470.31335.1 ID=mRNA_Ecto-sp8_S_contig96470.31335.1|Name=mRNA_Ecto-sp8_S_contig96470.31335.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96470:2..163- (Ectocarpus species8 EcLAC_412)
CGTTCCTTTCAGGTGGCGTTCGTGCAGACCCCGCAGCGTTTCCGCATGGA
GCTCAGCAACGACCCCCTCGGCAACCACGCCATCTCTCAGTACGACGTCA
TCAACCACGGGAAGGACGGGATCGGCGCCGTTTCTTCGAGTGGACAGGGC
AGCCTGTGGCGC
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