prot_Ecto-sp8_S_contig95.31071.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig95.31071.1
Unique Nameprot_Ecto-sp8_S_contig95.31071.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length539
Homology
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BLAST of mRNA_Ecto-sp8_S_contig95.31071.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 945 bits (2443), Expect = 0.000e+0
Identity = 488/538 (90.71%), Postives = 503/538 (93.49%), Query Frame = 0 
Query:    1 MAMVRAAASASXXXXXXTEWAEGLGGGHGDDPGRPGRQTCWAVWHDELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKSHDPTGTASPAAPSSGIGRKDDAREMHDETDIRSSTPEIAQEMRDIELEEKENEGGGQEGLTDDVGSSAGKNARPIPPRAELSPIDSGVTLTGEPQHLLDPVASGETARTGHEGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAPALSVSVSTLYEIVLSRAGVPWECYRAYAELKRRSYVVRRQPEDAVGHDDTAPRAAPLCWFQGTGATKTSNNKPITPASHTSSPSSSLPVTFHVYNNPSGCSSSFRKRDPGPPDALLVVCRFGDPMPDHRSLVALVELHANMQMKMSTSQQWRRRGREDRTAGVVLGLGPDEATPDRDSGSQKIPTSGLESERVTSSGGQESGQKGSLLDEDRQKRQAGTVPDQEKGLDAGRTRGRLTTEGSGGSTVAFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDAREAAELPS 538
            MAMVRA ASAS      TEWAEGLGGG GDDPGRPGRQTCWAVWH+ELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKK+HDPTGTASPAAPSSGIGRK+DAREMHDET I SSTPEIAQEMR+IE EEKENEGGGQEGLTDDV SSAGKNARPIPPRAELSPIDSGV LTGE QH LDPVASGETARTG  GGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPA ALSVSVSTLYE+VL+RAGVPWECYR YAELKRRSYVVRRQPED VGHDDTAPRAAPL WFQGTGATKTSNNK IT A+HTSSPSSSLPVTFHVY+NPSGCSSSFRKRDPGPPDAL+VVCRFGDPMPDHRSLVALVELHANMQMKMS SQQWRRRGRED TAGVV  LGPDEA PDR SGS ++PTSGLESERVTS GG+ESGQKGSLLDEDRQKRQA T+PDQ+KGLD GRTRGRLTTEGSGG T+AFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDA EAAELPS
Sbjct:    1 MAMVRATASASAASSAATEWAEGLGGGQGDDPGRPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRAELSPIDSGVILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATKTSNNKLITAANHTSSPSSSLPVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQQWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGSLLDEDRQKRQARTLPDQKKGLDGGRTRGRLTTEGSGGRTLAFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDALEAAELPS 538
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95.31071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI0.000e+090.71tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024336tRNA-splicing endonuclease, subunit Sen54, N-terminalPFAMPF12928tRNA_int_end_N2coord: 37..90
e-value: 4.2E-9
score: 36.5
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 42..396
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..538
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95contigEcto-sp8_S_contig95:24673..26613 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95.31071.1mRNA_Ecto-sp8_S_contig95.31071.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig95 24673..26613 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig95.31071.1 ID=prot_Ecto-sp8_S_contig95.31071.1|Name=mRNA_Ecto-sp8_S_contig95.31071.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=539bp
MAMVRAAASASAASSAATEWAEGLGGGHGDDPGRPGRQTCWAVWHDELAV
FEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKS
HDPTGTASPAAPSSGIGRKDDAREMHDETDIRSSTPEIAQEMRDIELEEK
ENEGGGQEGLTDDVGSSAGKNARPIPPRAELSPIDSGVTLTGEPQHLLDP
VASGETARTGHEGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAPA
LSVSVSTLYEIVLSRAGVPWECYRAYAELKRRSYVVRRQPEDAVGHDDTA
PRAAPLCWFQGTGATKTSNNKPITPASHTSSPSSSLPVTFHVYNNPSGCS
SSFRKRDPGPPDALLVVCRFGDPMPDHRSLVALVELHANMQMKMSTSQQW
RRRGREDRTAGVVLGLGPDEATPDRDSGSQKIPTSGLESERVTSSGGQES
GQKGSLLDEDRQKRQAGTVPDQEKGLDAGRTRGRLTTEGSGGSTVAFSKG
VEKLSTPGIKLAVVSGEAQVQLFDVGLHDAREAAELPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024336tRNA_splic_suSen54_N
IPR024337tRNA_splic_suSen54