mRNA_Ecto-sp8_S_contig95.31071.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95.31071.1
Unique NamemRNA_Ecto-sp8_S_contig95.31071.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig95.31071.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 945 bits (2443), Expect = 0.000e+0
Identity = 488/538 (90.71%), Postives = 503/538 (93.49%), Query Frame = 1 
Query:    1 MAMVRAAASASXXXXXXTEWAEGLGGGHGDDPGRPGRQTCWAVWHDELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKSHDPTGTASPAAPSSGIGRKDDAREMHDETDIRSSTPEIAQEMRDIELEEKENEGGGQEGLTDDVGSSAGKNARPIPPRAELSPIDSGVTLTGEPQHLLDPVASGETARTGHEGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAPALSVSVSTLYEIVLSRAGVPWECYRAYAELKRRSYVVRRQPEDAVGHDDTAPRAAPLCWFQGTGATKTSNNKPITPASHTSSPSSSLPVTFHVYNNPSGCSSSFRKRDPGPPDALLVVCRFGDPMPDHRSLVALVELHANMQMKMSTSQQWRRRGREDRTAGVVLGLGPDEATPDRDSGSQKIPTSGLESERVTSSGGQESGQKGSLLDEDRQKRQAGTVPDQEKGLDAGRTRGRLTTEGSGGSTVAFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDAREAAELPS 1614
            MAMVRA ASAS      TEWAEGLGGG GDDPGRPGRQTCWAVWH+ELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKK+HDPTGTASPAAPSSGIGRK+DAREMHDET I SSTPEIAQEMR+IE EEKENEGGGQEGLTDDV SSAGKNARPIPPRAELSPIDSGV LTGE QH LDPVASGETARTG  GGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPA ALSVSVSTLYE+VL+RAGVPWECYR YAELKRRSYVVRRQPED VGHDDTAPRAAPL WFQGTGATKTSNNK IT A+HTSSPSSSLPVTFHVY+NPSGCSSSFRKRDPGPPDAL+VVCRFGDPMPDHRSLVALVELHANMQMKMS SQQWRRRGRED TAGVV  LGPDEA PDR SGS ++PTSGLESERVTS GG+ESGQKGSLLDEDRQKRQA T+PDQ+KGLD GRTRGRLTTEGSGG T+AFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDA EAAELPS
Sbjct:    1 MAMVRATASASAASSAATEWAEGLGGGQGDDPGRPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRAELSPIDSGVILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATKTSNNKLITAANHTSSPSSSLPVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQQWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGSLLDEDRQKRQARTLPDQKKGLDGGRTRGRLTTEGSGGRTLAFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDALEAAELPS 538
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95.31071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI0.000e+090.71tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95contigEcto-sp8_S_contig95:24673..26613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1617
Hectar predicted targeting categoryother localisation
Exons3
Cds size1617
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145308.9568653-CDS-Ecto-sp8_S_contig95:24672..248641681145308.9568653-CDS-Ecto-sp8_S_contig95:24672..24864Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 24673..24864 +
1681145308.9753902-CDS-Ecto-sp8_S_contig95:24993..256461681145308.9753902-CDS-Ecto-sp8_S_contig95:24993..25646Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 24994..25646 +
1681145308.99254-CDS-Ecto-sp8_S_contig95:25841..266131681145308.99254-CDS-Ecto-sp8_S_contig95:25841..26613Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95 25842..26613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95.31071.1prot_Ecto-sp8_S_contig95.31071.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95 24673..26613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95.31071.1

>prot_Ecto-sp8_S_contig95.31071.1 ID=prot_Ecto-sp8_S_contig95.31071.1|Name=mRNA_Ecto-sp8_S_contig95.31071.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=539bp
MAMVRAAASASAASSAATEWAEGLGGGHGDDPGRPGRQTCWAVWHDELAV
FEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKS
HDPTGTASPAAPSSGIGRKDDAREMHDETDIRSSTPEIAQEMRDIELEEK
ENEGGGQEGLTDDVGSSAGKNARPIPPRAELSPIDSGVTLTGEPQHLLDP
VASGETARTGHEGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAPA
LSVSVSTLYEIVLSRAGVPWECYRAYAELKRRSYVVRRQPEDAVGHDDTA
PRAAPLCWFQGTGATKTSNNKPITPASHTSSPSSSLPVTFHVYNNPSGCS
SSFRKRDPGPPDALLVVCRFGDPMPDHRSLVALVELHANMQMKMSTSQQW
RRRGREDRTAGVVLGLGPDEATPDRDSGSQKIPTSGLESERVTSSGGQES
GQKGSLLDEDRQKRQAGTVPDQEKGLDAGRTRGRLTTEGSGGSTVAFSKG
VEKLSTPGIKLAVVSGEAQVQLFDVGLHDAREAAELPS*
back to top

mRNA from alignment at Ecto-sp8_S_contig95:24673..26613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95.31071.1 ID=mRNA_Ecto-sp8_S_contig95.31071.1|Name=mRNA_Ecto-sp8_S_contig95.31071.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1941bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95:24673..26613+ (Ectocarpus species8 EcLAC_412)
ATGGCTATGGTAAGGGCTGCTGCGTCAGCCTCTGCTGCTAGTAGTGCTGC
CACGGAGTGGGCGGAGGGCCTTGGAGGAGGACACGGAGACGATCCTGGAC
GTCCCGGGAGGCAGACGTGCTGGGCTGTCTGGCACGACGAGCTGGCAGTG
TTTGAGGTTCTGCAGCCCAGAGGCGACTCGCTGAGATCCATGGTGAGGAT
TTATAAATGTGTGTACATGGGACTGCAGACTATAACAAGACATGCTGCTG
AAATCAAGCATCCATGTGAATGAAAACCCTTTCCACGTATTGTCACTTCC
CTTTGTAACATGACAACTTAGGGGACGACCTGGCGCAGCAGGCTAATGTT
GCACGCAGAGGAAGGTCTCTGGCTGGTCGAGCGTGGCATGCTGGCCGTCC
ACCCTTTTTCTCCCGCCCCGAAGAAAAGCCACGATCCCACCGGCACGGCC
TCGCCCGCAGCACCGTCGTCGGGGATAGGGCGAAAAGACGACGCGAGGGA
AATGCATGATGAGACCGATATCAGAAGCTCTACGCCGGAGATTGCGCAAG
AGATGAGAGACATCGAGCTAGAAGAGAAGGAAAACGAGGGAGGCGGGCAG
GAAGGGCTTACTGATGACGTTGGTTCATCCGCTGGGAAGAACGCCCGTCC
AATTCCACCGAGGGCTGAGCTGTCGCCAATAGACAGCGGGGTGACACTCA
CGGGAGAACCACAACACTTGCTAGACCCTGTCGCATCCGGAGAAACTGCG
CGGACGGGACATGAGGGTGGCTGCCGAAAGGTACCAACCGCCGCCAAGGA
GGGGCGGCAAAGGGCGGGCTGTAAACGGAGCCGGCCGGGGCAGGGTAGGG
GTGAGCGGGTCGTGCGACCTGCCCCCGCCCTGTCGGTGTCGGTCAGCACG
CTCTATGAAATAGTATTGTCTCGGGCTGGTGTGCCGTGGGAGTGTTACCG
CGCCTACGCGGAGCTTAAACGAAGGTACGTGATCTTTGTGCCTTCGCAGG
TGGAGAGGCGTGGTGGTGATATGTAGGCTGTTATTTGTTAGGGTGGCTAC
ATACGACGGAGGGTGTCAGTGTTGGTGCTGGTGTTGCTATATAGTGATGA
GGACGTAACGTTTCGAAAACAAACGTGGACACAACCCGATGACAACTTGT
TCCTCGTATTGTAAAACAGGTCGTACGTGGTCAGGCGTCAACCGGAGGAC
GCCGTCGGACACGACGATACCGCTCCTAGAGCGGCACCTCTGTGTTGGTT
TCAAGGCACAGGCGCCACCAAAACGAGCAACAACAAACCTATCACACCTG
CGAGCCACACCTCCTCACCGTCCTCCTCCTTGCCGGTGACGTTCCATGTC
TACAACAACCCGTCGGGTTGCTCCTCCTCGTTCCGCAAGCGTGACCCTGG
GCCCCCTGACGCTCTCCTCGTGGTGTGCCGCTTCGGGGATCCCATGCCGG
ACCACCGCTCGCTCGTGGCCCTCGTCGAACTCCACGCCAACATGCAGATG
AAAATGAGCACGTCCCAACAATGGCGAAGGCGAGGGCGAGAGGATAGGAC
AGCTGGAGTTGTGTTGGGTTTAGGCCCAGACGAAGCAACGCCCGATCGGG
ACAGTGGAAGCCAGAAAATTCCAACCAGTGGCCTTGAATCAGAGCGCGTG
ACATCCAGCGGAGGCCAAGAATCGGGCCAGAAAGGCAGCTTGTTGGACGA
GGACAGGCAAAAACGACAGGCCGGGACGGTGCCGGATCAAGAAAAGGGGT
TAGATGCGGGAAGGACACGGGGGAGGCTTACCACCGAAGGCAGTGGAGGC
AGCACGGTGGCGTTTTCAAAAGGAGTTGAGAAGTTGTCGACGCCAGGAAT
AAAGTTGGCGGTCGTGTCGGGGGAGGCGCAAGTGCAACTGTTTGACGTTG
GCCTGCATGATGCCCGTGAGGCCGCAGAACTCCCCTCTTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95:24673..26613+

>mRNA_Ecto-sp8_S_contig95.31071.1 ID=mRNA_Ecto-sp8_S_contig95.31071.1|Name=mRNA_Ecto-sp8_S_contig95.31071.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1617bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95:24673..26613+ (Ectocarpus species8 EcLAC_412)
ATGGCTATGGTAAGGGCTGCTGCGTCAGCCTCTGCTGCTAGTAGTGCTGC
CACGGAGTGGGCGGAGGGCCTTGGAGGAGGACACGGAGACGATCCTGGAC
GTCCCGGGAGGCAGACGTGCTGGGCTGTCTGGCACGACGAGCTGGCAGTG
TTTGAGGTTCTGCAGCCCAGAGGCGACTCGCTGAGATCCATGGGGACGAC
CTGGCGCAGCAGGCTAATGTTGCACGCAGAGGAAGGTCTCTGGCTGGTCG
AGCGTGGCATGCTGGCCGTCCACCCTTTTTCTCCCGCCCCGAAGAAAAGC
CACGATCCCACCGGCACGGCCTCGCCCGCAGCACCGTCGTCGGGGATAGG
GCGAAAAGACGACGCGAGGGAAATGCATGATGAGACCGATATCAGAAGCT
CTACGCCGGAGATTGCGCAAGAGATGAGAGACATCGAGCTAGAAGAGAAG
GAAAACGAGGGAGGCGGGCAGGAAGGGCTTACTGATGACGTTGGTTCATC
CGCTGGGAAGAACGCCCGTCCAATTCCACCGAGGGCTGAGCTGTCGCCAA
TAGACAGCGGGGTGACACTCACGGGAGAACCACAACACTTGCTAGACCCT
GTCGCATCCGGAGAAACTGCGCGGACGGGACATGAGGGTGGCTGCCGAAA
GGTACCAACCGCCGCCAAGGAGGGGCGGCAAAGGGCGGGCTGTAAACGGA
GCCGGCCGGGGCAGGGTAGGGGTGAGCGGGTCGTGCGACCTGCCCCCGCC
CTGTCGGTGTCGGTCAGCACGCTCTATGAAATAGTATTGTCTCGGGCTGG
TGTGCCGTGGGAGTGTTACCGCGCCTACGCGGAGCTTAAACGAAGGTCGT
ACGTGGTCAGGCGTCAACCGGAGGACGCCGTCGGACACGACGATACCGCT
CCTAGAGCGGCACCTCTGTGTTGGTTTCAAGGCACAGGCGCCACCAAAAC
GAGCAACAACAAACCTATCACACCTGCGAGCCACACCTCCTCACCGTCCT
CCTCCTTGCCGGTGACGTTCCATGTCTACAACAACCCGTCGGGTTGCTCC
TCCTCGTTCCGCAAGCGTGACCCTGGGCCCCCTGACGCTCTCCTCGTGGT
GTGCCGCTTCGGGGATCCCATGCCGGACCACCGCTCGCTCGTGGCCCTCG
TCGAACTCCACGCCAACATGCAGATGAAAATGAGCACGTCCCAACAATGG
CGAAGGCGAGGGCGAGAGGATAGGACAGCTGGAGTTGTGTTGGGTTTAGG
CCCAGACGAAGCAACGCCCGATCGGGACAGTGGAAGCCAGAAAATTCCAA
CCAGTGGCCTTGAATCAGAGCGCGTGACATCCAGCGGAGGCCAAGAATCG
GGCCAGAAAGGCAGCTTGTTGGACGAGGACAGGCAAAAACGACAGGCCGG
GACGGTGCCGGATCAAGAAAAGGGGTTAGATGCGGGAAGGACACGGGGGA
GGCTTACCACCGAAGGCAGTGGAGGCAGCACGGTGGCGTTTTCAAAAGGA
GTTGAGAAGTTGTCGACGCCAGGAATAAAGTTGGCGGTCGTGTCGGGGGA
GGCGCAAGTGCAACTGTTTGACGTTGGCCTGCATGATGCCCGTGAGGCCG
CAGAACTCCCCTCTTAA
back to top