mRNA_Ecto-sp8_S_contig93947.30891.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93947.30891.1
Unique NamemRNA_Ecto-sp8_S_contig93947.30891.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: D8LM34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM34_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.440e-22
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS 144
            RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS
Sbjct: 1065 RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS 1112
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A836CLB4_9STRA (Non-SMC mitotic condensation complex subunit 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTL 135
            R+VA+E G FGHPL+RES+VLAL+K+MC+S A CER L LLFT L
Sbjct: 1136 RIVANEDGAFGHPLLRESAVLALAKYMCVSAAACERYLPLLFTAL 1180
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A1V9YNA9_9STRA (Condensin complex subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNA9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS 144
            RLVA+E G F   ++RE++++AL KFMCIS  FCE+NL L+FT L+ S
Sbjct:  920 RLVANEDGAFDDEMIRETAIVALCKFMCISSDFCEKNLPLVFTKLKES 967
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A1V9YJJ7_9STRA (Condensin complex subunit (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YJJ7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-8
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS 144
            R+VA+E G F   +V+E++++AL KFMCIS  FCE+NL L+FT L+ S
Sbjct: 1132 RMVANEDGVFDDEMVKETAIVALCKFMCISATFCEKNLPLIFTRLKES 1179
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A1Z5JXY1_FISSO (Condensin complex subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JXY1_FISSO)

HSP 1 Score: 57.0 bits (136), Expect = 3.340e-8
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS 144
            R+VA++GG F   ++ E+SVLAL+KFMC+S  FCE++L LLFT L ++
Sbjct:  921 RVVANDGGRFESKILMEASVLALTKFMCVSSHFCEKHLPLLFTALSKA 968
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A7S3MAC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAC1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.890e-8
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    4 LVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLER 141
            +VA+E   F HPL+RE+S+LAL ++MC S   C++ L LLFT LER
Sbjct:    4 MVANEQKKFSHPLLRETSILALCRYMCTSSVVCDQLLPLLFTVLER 49
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A7S4MY57_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MY57_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.180e-7
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTL 135
            R+V +EGG F   ++ +S+ LAL KFMCIS AFCE++L LLF+ L
Sbjct:  791 RVVGNEGGIFNSEILMQSATLALCKFMCISSAFCEKHLPLLFSAL 835
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A507BT70_9FUNG (Condensin complex subunit 1 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BT70_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 5.590e-7
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    7 VADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS 144
            +      + HPL++  +VLALSKFMC+S  FC+ NL LL T LERS
Sbjct:  964 ICKHNSTYSHPLLQTHAVLALSKFMCVSSDFCDSNLQLLLTILERS 1009
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A1E7FUA7_9STRA (ARM repeat-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FUA7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTL 135
            R+VA+EG  F   ++R++S LAL KFMC+S +FCE++L ++FT L
Sbjct:  888 RVVANEGDKFNSEILRQTSTLALCKFMCVSSSFCEQHLPVVFTAL 932
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BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Match: A0A507CTP5_9FUNG (Condensin complex subunit 1 n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CTP5_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    7 VADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS 144
            +  +   F  PL++  +VLALSKFMC+S  FC+ NL LL T LE+S
Sbjct:  987 ICKQNSHFSSPLLQTHAVLALSKFMCVSSEFCDSNLQLLLTVLEKS 1032
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93947.30891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM34_ECTSI1.440e-22100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLB4_9STRA1.840e-1168.89Non-SMC mitotic condensation complex subunit 1-dom... [more]
A0A1V9YNA9_9STRA5.100e-956.25Condensin complex subunit n=1 Tax=Achlya hypogyna ... [more]
A0A1V9YJJ7_9STRA1.300e-854.17Condensin complex subunit (Fragment) n=1 Tax=Thrau... [more]
A0A1Z5JXY1_FISSO3.340e-854.17Condensin complex subunit 1 n=2 Tax=Fistulifera so... [more]
A0A7S3MAC1_9STRA9.890e-854.35Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4MY57_9STRA2.180e-755.56Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A507BT70_9FUNG5.590e-752.17Condensin complex subunit 1 n=1 Tax=Synchytrium mi... [more]
A0A1E7FUA7_9STRA1.430e-651.11ARM repeat-containing protein n=1 Tax=Fragilariops... [more]
A0A507CTP5_9FUNG5.010e-650.00Condensin complex subunit 1 n=1 Tax=Synchytrium en... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93947contigEcto-sp8_S_contig93947:298..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score99.0
Seed ortholog evalue6.5e-19
Seed eggNOG ortholog2880.D8LM34
Preferred nameNCAPD2
Model size144
KEGG koko:K06677
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000797,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030466,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035327,GO:0040029,GO:0042393,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045120,GO:0045132,GO:0045143,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1902679,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
Exons1
EggNOG free text desc.mitotic chromosome condensation
EggNOG OGsCOG5098@1,KOG0414@2759
Cds size144
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145295.8031986-CDS-Ecto-sp8_S_contig93947:297..4411681145295.8031986-CDS-Ecto-sp8_S_contig93947:297..441Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93947 298..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93947.30891.1prot_Ecto-sp8_S_contig93947.30891.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93947 298..441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93947.30891.1

>prot_Ecto-sp8_S_contig93947.30891.1 ID=prot_Ecto-sp8_S_contig93947.30891.1|Name=mRNA_Ecto-sp8_S_contig93947.30891.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
RLVADEGGCFGHPLVRESSVLALSKFMCISEAFCERNLSLLFTTLERS
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mRNA from alignment at Ecto-sp8_S_contig93947:298..441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93947.30891.1 ID=mRNA_Ecto-sp8_S_contig93947.30891.1|Name=mRNA_Ecto-sp8_S_contig93947.30891.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93947:298..441- (Ectocarpus species8 EcLAC_412)
CGGCTCGTGGCCGACGAGGGCGGTTGCTTCGGGCACCCGCTCGTCCGGGA
GTCGTCCGTGCTGGCTCTGAGCAAGTTCATGTGCATCAGCGAGGCCTTCT
GCGAGCGGAACCTCAGCCTCCTGTTTACCACGCTGGAGAGGTCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93947:298..441-

>mRNA_Ecto-sp8_S_contig93947.30891.1 ID=mRNA_Ecto-sp8_S_contig93947.30891.1|Name=mRNA_Ecto-sp8_S_contig93947.30891.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93947:298..441- (Ectocarpus species8 EcLAC_412)
CGGCTCGTGGCCGACGAGGGCGGTTGCTTCGGGCACCCGCTCGTCCGGGA
GTCGTCCGTGCTGGCTCTGAGCAAGTTCATGTGCATCAGCGAGGCCTTCT
GCGAGCGGAACCTCAGCCTCCTGTTTACCACGCTGGAGAGGTCC
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