prot_Ecto-sp8_S_contig9345.30807.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9345.30807.1
Unique Nameprot_Ecto-sp8_S_contig9345.30807.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length69
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9345.30807.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.470e-29
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0 
Query:    1 GTYATQTTVQGGGVAAAASALKSDARLRQLLVGGEIFLGSALSACLTKMTLRAMDLLGDSSPAAKEMQ 68
            GTYATQTTVQGGGVAA ASALKSDARLRQLLVGGEIFLGSALSA LTKMTLRAMDLLGDSSPAAKEMQ
Sbjct:  531 GTYATQTTVQGGGVAAVASALKSDARLRQLLVGGEIFLGSALSASLTKMTLRAMDLLGDSSPAAKEMQ 598
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BLAST of mRNA_Ecto-sp8_S_contig9345.30807.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.370e-7
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 0 
Query:    1 GTYATQTTVQGGGVAAAASA----LKSDARLRQLLVGGEIFLGSALSACLTKMTLRAMDLLGDSSPAAKEMQ 68
            GTYATQ   +   V+A  S     +   + LR+L+ GG++FLG+AL  CLTK+TL A+ L+G++S   K+MQ
Sbjct:  519 GTYATQVRRRQLNVSAVISQCTTIIHMGSGLRRLIAGGDVFLGTALGVCLTKLTLHALKLMGETSNGVKDMQ 590
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BLAST of mRNA_Ecto-sp8_S_contig9345.30807.1 vs. uniprot
Match: A0A7S2UK79_9STRA (Coatomer subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UK79_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.920e-5
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0 
Query:    1 GTYATQTTVQGGGVAAAASALKSDARLRQLLVGGEIFLGSALSACLTKMTLRAMDL 56
            GTYATQT        A  +A  S   LR++++GG++FLGS +S+CLTK+ LRA DL
Sbjct:  541 GTYATQTVYSE--AKANPAAHDSTPHLRKMIIGGDVFLGSIVSSCLTKLCLRAADL 594
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9345.30807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7C5_ECTSI2.470e-2997.06Coatomer subunit beta n=1 Tax=Ectocarpus siliculos... [more]
A0A835Z7E2_9STRA7.370e-744.44Coatomer subunit beta n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2UK79_9STRA5.920e-550.00Coatomer subunit beta n=1 Tax=Attheya septentriona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9345contigEcto-sp8_S_contig9345:3..951 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9345.30807.1mRNA_Ecto-sp8_S_contig9345.30807.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9345 3..952 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9345.30807.1 ID=prot_Ecto-sp8_S_contig9345.30807.1|Name=mRNA_Ecto-sp8_S_contig9345.30807.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
GTYATQTTVQGGGVAAAASALKSDARLRQLLVGGEIFLGSALSACLTKMT
LRAMDLLGDSSPAAKEMQA
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