mRNA_Ecto-sp8_S_contig9345.30807.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9345.30807.1
Unique NamemRNA_Ecto-sp8_S_contig9345.30807.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9345.30807.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.470e-29
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 GTYATQTTVQGGGVAAAASALKSDARLRQLLVGGEIFLGSALSACLTKMTLRAMDLLGDSSPAAKEMQ 204
            GTYATQTTVQGGGVAA ASALKSDARLRQLLVGGEIFLGSALSA LTKMTLRAMDLLGDSSPAAKEMQ
Sbjct:  531 GTYATQTTVQGGGVAAVASALKSDARLRQLLVGGEIFLGSALSASLTKMTLRAMDLLGDSSPAAKEMQ 598
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BLAST of mRNA_Ecto-sp8_S_contig9345.30807.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.370e-7
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    1 GTYATQTTVQGGGVAAAASA----LKSDARLRQLLVGGEIFLGSALSACLTKMTLRAMDLLGDSSPAAKEMQ 204
            GTYATQ   +   V+A  S     +   + LR+L+ GG++FLG+AL  CLTK+TL A+ L+G++S   K+MQ
Sbjct:  519 GTYATQVRRRQLNVSAVISQCTTIIHMGSGLRRLIAGGDVFLGTALGVCLTKLTLHALKLMGETSNGVKDMQ 590
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BLAST of mRNA_Ecto-sp8_S_contig9345.30807.1 vs. uniprot
Match: A0A7S2UK79_9STRA (Coatomer subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UK79_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.920e-5
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 GTYATQTTVQGGGVAAAASALKSDARLRQLLVGGEIFLGSALSACLTKMTLRAMDL 168
            GTYATQT        A  +A  S   LR++++GG++FLGS +S+CLTK+ LRA DL
Sbjct:  541 GTYATQTVYSE--AKANPAAHDSTPHLRKMIIGGDVFLGSIVSSCLTKLCLRAADL 594
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9345.30807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7C5_ECTSI2.470e-2997.06Coatomer subunit beta n=1 Tax=Ectocarpus siliculos... [more]
A0A835Z7E2_9STRA7.370e-744.44Coatomer subunit beta n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2UK79_9STRA5.920e-550.00Coatomer subunit beta n=1 Tax=Attheya septentriona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9345contigEcto-sp8_S_contig9345:3..952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.6
Seed ortholog evalue3e-25
Seed eggNOG ortholog2880.D7G7C5
Preferred nameCOPB1
Model size208
KEGG koko:K17301
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006955,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010883,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030667,GO:0030903,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034613,GO:0036230,GO:0042119,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048475,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060429,GO:0061053,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0099503,GO:0101002,GO:0101003,GO:1905952
Exons2
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1058@2759
Cds size207
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145289.3364685-CDS-Ecto-sp8_S_contig9345:2..331681145289.3364685-CDS-Ecto-sp8_S_contig9345:2..33Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9345 3..33 +
1681145289.3488142-CDS-Ecto-sp8_S_contig9345:775..9511681145289.3488142-CDS-Ecto-sp8_S_contig9345:775..951Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9345 776..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9345.30807.1prot_Ecto-sp8_S_contig9345.30807.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9345 3..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9345.30807.1

>prot_Ecto-sp8_S_contig9345.30807.1 ID=prot_Ecto-sp8_S_contig9345.30807.1|Name=mRNA_Ecto-sp8_S_contig9345.30807.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
GTYATQTTVQGGGVAAAASALKSDARLRQLLVGGEIFLGSALSACLTKMT
LRAMDLLGDSSPAAKEMQA
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mRNA from alignment at Ecto-sp8_S_contig9345:3..952+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9345.30807.1 ID=mRNA_Ecto-sp8_S_contig9345.30807.1|Name=mRNA_Ecto-sp8_S_contig9345.30807.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=950bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9345:3..952+ (Ectocarpus species8 EcLAC_412)
GGGACTTACGCCACGCAGACCACGGTTCAAGGTGCGTGCGGGTTGTGCTG
TAGGCGGGCCTTGCTTGTACCGGTGTTTGGTACCGTGCGGCCTAATGTAG
CGGAACAGTACAACCACCCCCCCTCACCGACTTTCACCCGTGGAGCAGGC
GGCAGCTGACGTACCCGGTAGGAGTATTGCGCGCACGAAATCATCCGCAC
GTTTTGTGTGTGGTCCTGGTGTGCTTGCGAGGCTCTTTGATTCCACTGGG
AGAGGGGGAGAGTGTTGGCGTGTTGATGAAGACGGCTCTCGTACTATTGT
TGGCCGGGGTATAAGGCGGAGTACGCTCCACAGGCGGCGCTAGAACCATG
CACACAACGTGCCGTCGCAACGACCGCCCGCCTTTTACACGTTATTTGTA
CATATCTTGGTACGTGCGTTGAGGACACCGTCACGTCCGTCCATATCTTT
CTTTGCTCCATTTTGTTTCTTTCTTGGGGAATTTGAACCTCGTTTTGCCT
TTGGCATTTGACCACGGAGGTTTGTTGTTTTGCCTCCAACTAAAGATTAG
GGGAAGCGCGCTGGATGTAGGCCAGAACATTTTTATGTTGGTCAAGAAGC
AGCACCAGCAACAAGTCATTCCTCCTACGGTAAAGTACCGGTACCAAAGA
AGTGACACGCACGCCATCCATCAACCCGACAATCGGCCCCTCTGAACACC
AATCATTGTTGCGCACTTTTTTTCTTTTACTGAAAAAATGTTCTCCGTAC
AAATATTCTCCGTACTGCTTTAGGCGGTGGTGTGGCGGCGGCAGCCTCCG
CCTTGAAGAGCGACGCCCGCCTCCGGCAGCTGCTGGTGGGCGGCGAGATC
TTCCTCGGGTCTGCGCTGTCGGCATGTCTCACCAAGATGACCCTCCGTGC
CATGGACCTGCTGGGGGACAGCTCTCCGGCTGCGAAGGAGATGCAGGCAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9345:3..952+

>mRNA_Ecto-sp8_S_contig9345.30807.1 ID=mRNA_Ecto-sp8_S_contig9345.30807.1|Name=mRNA_Ecto-sp8_S_contig9345.30807.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9345:3..952+ (Ectocarpus species8 EcLAC_412)
GGGACTTACGCCACGCAGACCACGGTTCAAGGCGGTGGTGTGGCGGCGGC
AGCCTCCGCCTTGAAGAGCGACGCCCGCCTCCGGCAGCTGCTGGTGGGCG
GCGAGATCTTCCTCGGGTCTGCGCTGTCGGCATGTCTCACCAAGATGACC
CTCCGTGCCATGGACCTGCTGGGGGACAGCTCTCCGGCTGCGAAGGAGAT
GCAGGCA
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