mRNA_Ecto-sp8_S_contig92492.30657.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92492.30657.1
Unique NamemRNA_Ecto-sp8_S_contig92492.30657.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92492.30657.1 vs. uniprot
Match: D7G0Z4_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z4_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 3.420e-67
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 QLVENSGGFRTFSSRVQGSSSLALRGETTVDEHIGRLYTAFLNTTSTLDWVRFLVEVEELPTQASSRRGGSGDGDVLFQKYDMPWPVKDREVVIRRSVRLDKRAKKMIAS 330
            +LVE+SGGFRTFSSRVQGSSSLALRGETTVDEHIGRLYTAFLNTTSTLDWVRFLVEVEELPTQASSRRGGSGDGDVLFQKYDMPWPVKDREVVIRRSVRLDKRAKKMIAS
Sbjct:   67 ELVEDSGGFRTFSSRVQGSSSLALRGETTVDEHIGRLYTAFLNTTSTLDWVRFLVEVEELPTQASSRRGGSGDGDVLFQKYDMPWPVKDREVVIRRSVRLDKRAKKMIAS 176
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BLAST of mRNA_Ecto-sp8_S_contig92492.30657.1 vs. uniprot
Match: A0A4D9CVN7_9STRA (START domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVN7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.680e-12
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   61 SLALRGETTVDEHIGRLYTAFLNTTSTLDWVRFLVEVEELPTQASSRRGGSGDGDVLFQKYDMPWPVKDREVVIRRSVRLDKR 309
            +++LRG+ +VD HI  + T FLNT+ + +WV +L   EELPT       G  +  +++Q +DMP P+ DRE ++RR+V  D+R
Sbjct:  161 TISLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPT-------GQENAHIIYQFFDMPLPLSDREFLMRRTVVSDRR 236
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BLAST of mRNA_Ecto-sp8_S_contig92492.30657.1 vs. uniprot
Match: A0A6H5L2R4_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.670e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:  247 MPWPVKDREVVIRRSVRLDKRAKKMIAS 330
            MPWPVKDREVVIRRSVRLDKRAKKMIAS
Sbjct:    1 MPWPVKDREVVIRRSVRLDKRAKKMIAS 28
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BLAST of mRNA_Ecto-sp8_S_contig92492.30657.1 vs. uniprot
Match: UPI001D17CC2B (START domain-containing protein n=2 Tax=Marinobacter TaxID=2742 RepID=UPI001D17CC2B)

HSP 1 Score: 56.2 bits (134), Expect = 4.270e-7
Identity = 36/95 (37.89%), Postives = 46/95 (48.42%), Query Frame = 1 
Query:    1 QLVENSGGFRTFSSRVQGSSSLALRGETTVDEHIGRLYTAFLNTTSTLDWVRFLVEVEELPTQASSRRGGSGDGDVLFQKYDMPWPVKDREVVIR 285
            QL E S G R +++ V GS   A R    +D    RL    +N  S  +WV   VE E   +      GG GD    +   DMPWPV+DR+ VIR
Sbjct:   35 QLREESDGIRIYTTAVPGSDFEAFRAVADLDASTSRLMAVLVNPASCTEWVHNCVESEAFGS------GGFGDR-YAYSVNDMPWPVQDRDYVIR 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92492.30657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0Z4_ECTSI3.420e-6798.18START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9CVN7_9STRA6.680e-1240.96START domain-containing protein n=2 Tax=Monodopsid... [more]
A0A6H5L2R4_9PHAE6.670e-8100.00START domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001D17CC2B4.270e-737.89START domain-containing protein n=2 Tax=Marinobact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92492contigEcto-sp8_S_contig92492:275..604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score213.8
Seed ortholog evalue4.1e-53
Seed eggNOG ortholog2880.D7G0Z4
Model size330
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2E8QF@1,2SF5U@2759
Cds size330
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145277.9039004-CDS-Ecto-sp8_S_contig92492:274..6041681145277.9039004-CDS-Ecto-sp8_S_contig92492:274..604Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92492 275..604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92492.30657.1prot_Ecto-sp8_S_contig92492.30657.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92492 275..604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92492.30657.1

>prot_Ecto-sp8_S_contig92492.30657.1 ID=prot_Ecto-sp8_S_contig92492.30657.1|Name=mRNA_Ecto-sp8_S_contig92492.30657.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=110bp
QLVENSGGFRTFSSRVQGSSSLALRGETTVDEHIGRLYTAFLNTTSTLDW
VRFLVEVEELPTQASSRRGGSGDGDVLFQKYDMPWPVKDREVVIRRSVRL
DKRAKKMIAS
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mRNA from alignment at Ecto-sp8_S_contig92492:275..604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92492.30657.1 ID=mRNA_Ecto-sp8_S_contig92492.30657.1|Name=mRNA_Ecto-sp8_S_contig92492.30657.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92492:275..604- (Ectocarpus species8 EcLAC_412)
CAGCTGGTTGAAAACAGCGGCGGGTTTCGAACCTTTTCTTCGCGGGTACA
GGGCAGCAGCTCGTTGGCCCTTCGGGGCGAAACAACCGTTGACGAACACA
TCGGCCGACTGTACACGGCGTTTCTGAACACGACTTCCACGTTGGACTGG
GTACGATTTCTGGTGGAGGTTGAGGAACTCCCGACGCAGGCCTCTTCAAG
GCGGGGGGGCAGCGGCGATGGGGACGTGTTGTTCCAGAAGTACGACATGC
CGTGGCCCGTGAAGGACAGGGAGGTGGTGATTCGAAGAAGCGTGCGACTG
GACAAGCGAGCCAAGAAGATGATCGCATCA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92492:275..604-

>mRNA_Ecto-sp8_S_contig92492.30657.1 ID=mRNA_Ecto-sp8_S_contig92492.30657.1|Name=mRNA_Ecto-sp8_S_contig92492.30657.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92492:275..604- (Ectocarpus species8 EcLAC_412)
CAGCTGGTTGAAAACAGCGGCGGGTTTCGAACCTTTTCTTCGCGGGTACA
GGGCAGCAGCTCGTTGGCCCTTCGGGGCGAAACAACCGTTGACGAACACA
TCGGCCGACTGTACACGGCGTTTCTGAACACGACTTCCACGTTGGACTGG
GTACGATTTCTGGTGGAGGTTGAGGAACTCCCGACGCAGGCCTCTTCAAG
GCGGGGGGGCAGCGGCGATGGGGACGTGTTGTTCCAGAAGTACGACATGC
CGTGGCCCGTGAAGGACAGGGAGGTGGTGATTCGAAGAAGCGTGCGACTG
GACAAGCGAGCCAAGAAGATGATCGCATCA
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