prot_Ecto-sp8_S_contig92302.30621.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig92302.30621.1
Unique Nameprot_Ecto-sp8_S_contig92302.30621.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length99
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92302.30621.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.160e-48
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0 
Query:    1 MATIDDDGIQLVTEEQAARSVLVQGLPILDRQRTESSLVEVFSVYGRVSTLLLQTIRLSQTQRALVVFAESAGATAALQQNNRNILGASCSVCLSSTLA 99
            MAT+DDDGIQLVTEEQAARSVLVQGLPILDRQRTE SLVEVFSVYGRVS LLLQTIRLSQTQRALVVFAESAGATAALQQN+R+ILGASCSVCLSSTLA
Sbjct:  436 MATLDDDGIQLVTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLA 534
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BLAST of mRNA_Ecto-sp8_S_contig92302.30621.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.020e-25
Identity = 55/87 (63.22%), Postives = 74/87 (85.06%), Query Frame = 0 
Query:   12 VTEEQAARSVLVQGLPILDRQRTESSLVEVFSVYGRVSTLLLQTIRLSQTQRALVVFAESAGATAALQQNNRNILGASCSVCLSSTL 98
            VT+ +A RS+LVQGLP+LD++ TESS+V+VFS YG +S LLLQT   S+TQRA++VFA+ AGAT+ALQ N R+ILGA+CSV L+S++
Sbjct:   24 VTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSM 110
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BLAST of mRNA_Ecto-sp8_S_contig92302.30621.1 vs. uniprot
Match: A0A7S3Y4B4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4B4_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 5.080e-6
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 0 
Query:   13 TEEQAARSVLVQGLPILDRQRTESSLVEVFSVYGRVSTLLLQTIRLSQTQRALVVFAESAGATAA 77
            +E +A+R+VLV G+P +    +E +++  F+ YG +S L+ QT    +TQRA+V++AE  G +AA
Sbjct:   21 SEAEASRAVLVSGIPNVKGSGSEDAIMTRFAQYGTISRLIFQTEESGETQRAVVIYAEDQGPSAA 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92302.30621.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JE69_9PHAE1.160e-4894.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G7Z1_ECTSI2.020e-2563.22RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3Y4B4_HETAK5.080e-640.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 30..86
e-value: 9.5E-5
score: 22.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 19..97
score: 9.166
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 10..98
e-value: 2.1E-7
score: 32.8
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 13..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92302contigEcto-sp8_S_contig92302:85..381 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92302.30621.1mRNA_Ecto-sp8_S_contig92302.30621.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig92302 85..381 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig92302.30621.1 ID=prot_Ecto-sp8_S_contig92302.30621.1|Name=mRNA_Ecto-sp8_S_contig92302.30621.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=99bp
MATIDDDGIQLVTEEQAARSVLVQGLPILDRQRTESSLVEVFSVYGRVST
LLLQTIRLSQTQRALVVFAESAGATAALQQNNRNILGASCSVCLSSTLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf