mRNA_Ecto-sp8_S_contig92302.30621.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92302.30621.1
Unique NamemRNA_Ecto-sp8_S_contig92302.30621.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92302.30621.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.160e-48
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 1 
Query:    1 MATIDDDGIQLVTEEQAARSVLVQGLPILDRQRTESSLVEVFSVYGRVSTLLLQTIRLSQTQRALVVFAESAGATAALQQNNRNILGASCSVCLSSTLA 297
            MAT+DDDGIQLVTEEQAARSVLVQGLPILDRQRTE SLVEVFSVYGRVS LLLQTIRLSQTQRALVVFAESAGATAALQQN+R+ILGASCSVCLSSTLA
Sbjct:  436 MATLDDDGIQLVTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLA 534
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BLAST of mRNA_Ecto-sp8_S_contig92302.30621.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.020e-25
Identity = 55/87 (63.22%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:   34 VTEEQAARSVLVQGLPILDRQRTESSLVEVFSVYGRVSTLLLQTIRLSQTQRALVVFAESAGATAALQQNNRNILGASCSVCLSSTL 294
            VT+ +A RS+LVQGLP+LD++ TESS+V+VFS YG +S LLLQT   S+TQRA++VFA+ AGAT+ALQ N R+ILGA+CSV L+S++
Sbjct:   24 VTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSM 110
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BLAST of mRNA_Ecto-sp8_S_contig92302.30621.1 vs. uniprot
Match: A0A7S3Y4B4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4B4_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 5.080e-6
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   37 TEEQAARSVLVQGLPILDRQRTESSLVEVFSVYGRVSTLLLQTIRLSQTQRALVVFAESAGATAA 231
            +E +A+R+VLV G+P +    +E +++  F+ YG +S L+ QT    +TQRA+V++AE  G +AA
Sbjct:   21 SEAEASRAVLVSGIPNVKGSGSEDAIMTRFAQYGTISRLIFQTEESGETQRAVVIYAEDQGPSAA 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92302.30621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JE69_9PHAE1.160e-4894.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G7Z1_ECTSI2.020e-2563.22RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3Y4B4_HETAK5.080e-640.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92302contigEcto-sp8_S_contig92302:85..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145275.6522603-CDS-Ecto-sp8_S_contig92302:84..3811681145275.6522603-CDS-Ecto-sp8_S_contig92302:84..381Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92302 85..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92302.30621.1prot_Ecto-sp8_S_contig92302.30621.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92302 85..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92302.30621.1

>prot_Ecto-sp8_S_contig92302.30621.1 ID=prot_Ecto-sp8_S_contig92302.30621.1|Name=mRNA_Ecto-sp8_S_contig92302.30621.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=99bp
MATIDDDGIQLVTEEQAARSVLVQGLPILDRQRTESSLVEVFSVYGRVST
LLLQTIRLSQTQRALVVFAESAGATAALQQNNRNILGASCSVCLSSTLA
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mRNA from alignment at Ecto-sp8_S_contig92302:85..381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92302.30621.1 ID=mRNA_Ecto-sp8_S_contig92302.30621.1|Name=mRNA_Ecto-sp8_S_contig92302.30621.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92302:85..381- (Ectocarpus species8 EcLAC_412)
ATGGCGACCATCGATGATGACGGGATCCAACTTGTGACGGAGGAGCAAGC
GGCCCGGTCAGTCCTCGTGCAAGGATTGCCGATCCTCGATCGACAGCGGA
CGGAATCTTCCCTGGTGGAGGTCTTCTCGGTTTACGGACGAGTCTCCACG
CTTCTCCTGCAGACGATCCGACTGAGCCAGACCCAGAGGGCTCTCGTGGT
GTTCGCAGAATCGGCGGGTGCTACCGCAGCTCTGCAGCAGAACAACCGCA
ACATTCTCGGTGCGAGCTGCAGCGTGTGCCTGTCGTCCACGCTAGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92302:85..381-

>mRNA_Ecto-sp8_S_contig92302.30621.1 ID=mRNA_Ecto-sp8_S_contig92302.30621.1|Name=mRNA_Ecto-sp8_S_contig92302.30621.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92302:85..381- (Ectocarpus species8 EcLAC_412)
ATGGCGACCATCGATGATGACGGGATCCAACTTGTGACGGAGGAGCAAGC
GGCCCGGTCAGTCCTCGTGCAAGGATTGCCGATCCTCGATCGACAGCGGA
CGGAATCTTCCCTGGTGGAGGTCTTCTCGGTTTACGGACGAGTCTCCACG
CTTCTCCTGCAGACGATCCGACTGAGCCAGACCCAGAGGGCTCTCGTGGT
GTTCGCAGAATCGGCGGGTGCTACCGCAGCTCTGCAGCAGAACAACCGCA
ACATTCTCGGTGCGAGCTGCAGCGTGTGCCTGTCGTCCACGCTAGCC
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