mRNA_Ecto-sp8_S_contig10962.1332.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10962.1332.1
Unique NamemRNA_Ecto-sp8_S_contig10962.1332.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10962.1332.1 vs. uniprot
Match: A0A6H5JKZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.550e-45
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:  271 MHLFSRLVCCGPGAESNVHYSDEDSSGDEFTGSGAASAAVIRWPHDTPRRLEDAGSVRVLPSDVKAPAERSRHPGHRK 504
            MHLFSRLVCCGPGAESNVHYSDE+SSGDEFTGSGAASA VIRWPHDTPRRLEDAGSVRVLPSDVKAP ERSRHPGHRK
Sbjct:    1 MHLFSRLVCCGPGAESNVHYSDEESSGDEFTGSGAASATVIRWPHDTPRRLEDAGSVRVLPSDVKAPTERSRHPGHRK 78
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10962.1332.1 vs. uniprot
Match: D8LK63_ECTSI (Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK63_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 6.470e-43
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:  271 MHLFSRLVCCGPGAESNVHYSDEDSSGDEFTGSGAASAAVIRWPHDTPRRLEDAGSVRVLPSDVKAPAERSRHPGHRK 504
            MHLFSRLVCCGPGAESNVHYSDEDSSGDEFTGSGAASAAVIRWPHDTPRRLEDAGSVRVLPSDVKA AERSRHPGHRK
Sbjct:    1 MHLFSRLVCCGPGAESNVHYSDEDSSGDEFTGSGAASAAVIRWPHDTPRRLEDAGSVRVLPSDVKATAERSRHPGHRK 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10962.1332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKZ5_9PHAE6.550e-4596.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK63_ECTSI6.470e-4398.72Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10962contigEcto-sp8_S_contig10962:3518..4022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score163.7
Seed ortholog evalue7.5e-38
Seed eggNOG ortholog2880.D8LK63
Preferred nameACTL10
Model size507
KEGG koko:K05692,ko:K16616
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Hectar predicted targeting categorymitochondrion
GOsGO:0001673,GO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0031514,GO:0032991,GO:0042995,GO:0043073,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464,GO:0071840,GO:0120025
Exons1
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
Cds size504
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143184.0098987-CDS-Ecto-sp8_S_contig10962:3517..40211681143184.0098987-CDS-Ecto-sp8_S_contig10962:3517..4021Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10962 3518..4021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10962.1332.1prot_Ecto-sp8_S_contig10962.1332.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10962 3518..4021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10962.1332.1

>prot_Ecto-sp8_S_contig10962.1332.1 ID=prot_Ecto-sp8_S_contig10962.1332.1|Name=mRNA_Ecto-sp8_S_contig10962.1332.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=168bp
YIVHISLCPAQLRTRRRPPGYPIPNRCNYHWLVVSRQRGTLPIIRDALLT
RTEQRTAGGFGYIYLLCSTARPKATKAEAKERHLSASKRNMHLFSRLVCC
GPGAESNVHYSDEDSSGDEFTGSGAASAAVIRWPHDTPRRLEDAGSVRVL
PSDVKAPAERSRHPGHRK
back to top

mRNA from alignment at Ecto-sp8_S_contig10962:3518..4022+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10962.1332.1 ID=mRNA_Ecto-sp8_S_contig10962.1332.1|Name=mRNA_Ecto-sp8_S_contig10962.1332.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=505bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10962:3518..4022+ (Ectocarpus species8 EcLAC_412)
TACATTGTACACATATCCCTGTGCCCAGCTCAGCTTCGTACTAGGCGACG
CCCCCCTGGCTATCCAATACCCAACCGGTGCAACTATCACTGGCTTGTGG
TTTCGCGTCAACGAGGCACTCTTCCCATTATTCGCGACGCTCTACTGACA
AGGACAGAGCAGAGGACGGCCGGCGGGTTTGGGTATATATACTTGTTGTG
CTCGACCGCTCGACCCAAGGCGACGAAAGCAGAAGCAAAAGAAAGACACT
TGTCAGCATCAAAAAGAAACATGCACCTGTTCTCGAGGCTGGTATGCTGC
GGCCCCGGCGCAGAGAGCAACGTGCACTACAGCGACGAGGACAGCAGCGG
CGACGAGTTTACCGGCAGCGGGGCCGCCTCCGCCGCGGTGATCCGCTGGC
CCCACGACACGCCGCGACGTTTGGAGGACGCCGGGTCCGTGCGGGTGCTG
CCGTCGGATGTCAAGGCACCCGCGGAGAGATCACGGCATCCTGGTCATCG
GAAAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10962:3518..4022+

>mRNA_Ecto-sp8_S_contig10962.1332.1 ID=mRNA_Ecto-sp8_S_contig10962.1332.1|Name=mRNA_Ecto-sp8_S_contig10962.1332.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10962:3518..4022+ (Ectocarpus species8 EcLAC_412)
TACATTGTACACATATCCCTGTGCCCAGCTCAGCTTCGTACTAGGCGACG
CCCCCCTGGCTATCCAATACCCAACCGGTGCAACTATCACTGGCTTGTGG
TTTCGCGTCAACGAGGCACTCTTCCCATTATTCGCGACGCTCTACTGACA
AGGACAGAGCAGAGGACGGCCGGCGGGTTTGGGTATATATACTTGTTGTG
CTCGACCGCTCGACCCAAGGCGACGAAAGCAGAAGCAAAAGAAAGACACT
TGTCAGCATCAAAAAGAAACATGCACCTGTTCTCGAGGCTGGTATGCTGC
GGCCCCGGCGCAGAGAGCAACGTGCACTACAGCGACGAGGACAGCAGCGG
CGACGAGTTTACCGGCAGCGGGGCCGCCTCCGCCGCGGTGATCCGCTGGC
CCCACGACACGCCGCGACGTTTGGAGGACGCCGGGTCCGTGCGGGTGCTG
CCGTCGGATGTCAAGGCACCCGCGGAGAGATCACGGCATCCTGGTCATCG
GAAA
back to top