mRNA_Ecto-sp8_S_contig104609.735.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104609.735.1
Unique NamemRNA_Ecto-sp8_S_contig104609.735.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104609.735.1 vs. uniprot
Match: D8LM34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM34_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 3.050e-77
Identity = 132/137 (96.35%), Postives = 132/137 (96.35%), Query Frame = 1 
Query:   10 SRKSSSDSGVFKWENARQAVLESMRLALTVDSSRLWRQGIPGRSFMSLFLRLSCKMLELPETSRSGSRQAELASQLIAKPFHLAQGMETEVTAAVFLLVRECKHLAEFVARLCWRLVEMHGDSRLGAELAREVGRME 420
            SRKSS DSG FKWENARQAVLESMRLALTVDSSRLWRQGIP RSFMSLFLRLSCKMLELPETSR GSRQAELASQLIAKPFHLAQGMETEVTAAVFLLVRECKHLAEFVARLCWRLVE HGDSRLGAELAREVGRME
Sbjct:  195 SRKSSPDSGAFKWENARQAVLESMRLALTVDSSRLWRQGIPDRSFMSLFLRLSCKMLELPETSRGGSRQAELASQLIAKPFHLAQGMETEVTAAVFLLVRECKHLAEFVARLCWRLVERHGDSRLGAELAREVGRME 331
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BLAST of mRNA_Ecto-sp8_S_contig104609.735.1 vs. uniprot
Match: A0A836CLB4_9STRA (Non-SMC mitotic condensation complex subunit 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.140e-18
Identity = 57/143 (39.86%), Postives = 74/143 (51.75%), Query Frame = 1 
Query:   40 FKWENARQAVLESMRLALTVDSSRLWRQGIPGRSFMSLFLRLSCKMLELPETSRSGSRQAELASQLIAKPFHLAQGMETEVTAAVFLLVRECKHLAEFVARLCWRLVE-----------------MHGDSRLGAELAREVGRM 417
            + WE AR+AVL +M  AL+ D  RLW  G+  + F SLF RL+ K LELP T RS + +A +  +LIA P+    G+   V AA    V   +HL   +A LC RL                      D+RL AEL RE+GRM
Sbjct:  205 YDWETAREAVLTTMATALSADLQRLWSLGVADQEFASLFTRLAFKALELPATLRSRAARAAVL-ELIAVPYASVSGLAIPVCAAALQAVTAYEHLPAPMAELCARLAAGXXXXXXXXXXXXXXXXXXXDTRLAAELLREIGRM 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104609.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM34_ECTSI3.050e-7796.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLB4_9STRA2.140e-1839.86Non-SMC mitotic condensation complex subunit 1-dom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104609contigEcto-sp8_S_contig104609:91..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score259.6
Seed ortholog evalue8.3e-67
Seed eggNOG ortholog2880.D8LM34
Preferred nameNCAPD2
Model size420
KEGG koko:K06677
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000797,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030466,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035327,GO:0040029,GO:0042393,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045120,GO:0045132,GO:0045143,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1902679,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
Exons1
EggNOG free text desc.mitotic chromosome condensation
EggNOG OGsCOG5098@1,KOG0414@2759
Cds size420
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143145.0376763-CDS-Ecto-sp8_S_contig104609:90..5101681143145.0376763-CDS-Ecto-sp8_S_contig104609:90..510Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104609 91..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104609.735.1prot_Ecto-sp8_S_contig104609.735.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104609 91..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104609.735.1

>prot_Ecto-sp8_S_contig104609.735.1 ID=prot_Ecto-sp8_S_contig104609.735.1|Name=mRNA_Ecto-sp8_S_contig104609.735.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=140bp
GGGSRKSSSDSGVFKWENARQAVLESMRLALTVDSSRLWRQGIPGRSFMS
LFLRLSCKMLELPETSRSGSRQAELASQLIAKPFHLAQGMETEVTAAVFL
LVRECKHLAEFVARLCWRLVEMHGDSRLGAELAREVGRME
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mRNA from alignment at Ecto-sp8_S_contig104609:91..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104609.735.1 ID=mRNA_Ecto-sp8_S_contig104609.735.1|Name=mRNA_Ecto-sp8_S_contig104609.735.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104609:91..510+ (Ectocarpus species8 EcLAC_412)
GGCGGAGGGAGCAGGAAATCTTCGTCCGACAGCGGCGTGTTCAAGTGGGA
GAACGCGCGGCAGGCCGTGCTGGAGAGCATGCGGCTCGCGCTGACGGTGG
ACTCGTCCCGCCTGTGGCGGCAGGGCATCCCGGGCCGATCCTTCATGAGC
CTGTTCCTCCGCCTCTCCTGCAAGATGCTGGAGCTGCCGGAGACGTCCAG
GAGCGGCTCCCGGCAGGCGGAGCTCGCGTCGCAGCTCATCGCGAAGCCGT
TCCACCTGGCGCAGGGCATGGAGACGGAAGTGACCGCGGCGGTGTTCCTG
CTGGTGAGGGAGTGCAAGCACCTCGCCGAGTTCGTGGCCAGGCTGTGCTG
GCGCCTCGTGGAGATGCACGGCGACTCGCGACTAGGGGCGGAGCTAGCGC
GGGAGGTTGGGCGCATGGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104609:91..510+

>mRNA_Ecto-sp8_S_contig104609.735.1 ID=mRNA_Ecto-sp8_S_contig104609.735.1|Name=mRNA_Ecto-sp8_S_contig104609.735.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104609:91..510+ (Ectocarpus species8 EcLAC_412)
GGCGGAGGGAGCAGGAAATCTTCGTCCGACAGCGGCGTGTTCAAGTGGGA
GAACGCGCGGCAGGCCGTGCTGGAGAGCATGCGGCTCGCGCTGACGGTGG
ACTCGTCCCGCCTGTGGCGGCAGGGCATCCCGGGCCGATCCTTCATGAGC
CTGTTCCTCCGCCTCTCCTGCAAGATGCTGGAGCTGCCGGAGACGTCCAG
GAGCGGCTCCCGGCAGGCGGAGCTCGCGTCGCAGCTCATCGCGAAGCCGT
TCCACCTGGCGCAGGGCATGGAGACGGAAGTGACCGCGGCGGTGTTCCTG
CTGGTGAGGGAGTGCAAGCACCTCGCCGAGTTCGTGGCCAGGCTGTGCTG
GCGCCTCGTGGAGATGCACGGCGACTCGCGACTAGGGGCGGAGCTAGCGC
GGGAGGTTGGGCGCATGGAG
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