prot_Ecto-sp8_S_contig104609.735.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig104609.735.1
Unique Nameprot_Ecto-sp8_S_contig104609.735.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length140
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104609.735.1 vs. uniprot
Match: D8LM34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM34_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 3.050e-77
Identity = 132/137 (96.35%), Postives = 132/137 (96.35%), Query Frame = 0 
Query:    4 SRKSSSDSGVFKWENARQAVLESMRLALTVDSSRLWRQGIPGRSFMSLFLRLSCKMLELPETSRSGSRQAELASQLIAKPFHLAQGMETEVTAAVFLLVRECKHLAEFVARLCWRLVEMHGDSRLGAELAREVGRME 140
            SRKSS DSG FKWENARQAVLESMRLALTVDSSRLWRQGIP RSFMSLFLRLSCKMLELPETSR GSRQAELASQLIAKPFHLAQGMETEVTAAVFLLVRECKHLAEFVARLCWRLVE HGDSRLGAELAREVGRME
Sbjct:  195 SRKSSPDSGAFKWENARQAVLESMRLALTVDSSRLWRQGIPDRSFMSLFLRLSCKMLELPETSRGGSRQAELASQLIAKPFHLAQGMETEVTAAVFLLVRECKHLAEFVARLCWRLVERHGDSRLGAELAREVGRME 331
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BLAST of mRNA_Ecto-sp8_S_contig104609.735.1 vs. uniprot
Match: A0A836CLB4_9STRA (Non-SMC mitotic condensation complex subunit 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.140e-18
Identity = 57/143 (39.86%), Postives = 74/143 (51.75%), Query Frame = 0 
Query:   14 FKWENARQAVLESMRLALTVDSSRLWRQGIPGRSFMSLFLRLSCKMLELPETSRSGSRQAELASQLIAKPFHLAQGMETEVTAAVFLLVRECKHLAEFVARLCWRLVE-----------------MHGDSRLGAELAREVGRM 139
            + WE AR+AVL +M  AL+ D  RLW  G+  + F SLF RL+ K LELP T RS + +A +  +LIA P+    G+   V AA    V   +HL   +A LC RL                      D+RL AEL RE+GRM
Sbjct:  205 YDWETAREAVLTTMATALSADLQRLWSLGVADQEFASLFTRLAFKALELPATLRSRAARAAVL-ELIAVPYASVSGLAIPVCAAALQAVTAYEHLPAPMAELCARLAAGXXXXXXXXXXXXXXXXXXXDTRLAAELLREIGRM 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104609.735.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM34_ECTSI3.050e-7796.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLB4_9STRA2.140e-1839.86Non-SMC mitotic condensation complex subunit 1-dom... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024324Condensin complex subunit 1, N-terminalPFAMPF12922Cnd1_Ncoord: 5..67
e-value: 2.3E-8
score: 34.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104609contigEcto-sp8_S_contig104609:91..510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104609.735.1mRNA_Ecto-sp8_S_contig104609.735.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig104609 91..510 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig104609.735.1 ID=prot_Ecto-sp8_S_contig104609.735.1|Name=mRNA_Ecto-sp8_S_contig104609.735.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=140bp
GGGSRKSSSDSGVFKWENARQAVLESMRLALTVDSSRLWRQGIPGRSFMS
LFLRLSCKMLELPETSRSGSRQAELASQLIAKPFHLAQGMETEVTAAVFL
LVRECKHLAEFVARLCWRLVEMHGDSRLGAELAREVGRME
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024324Condensin_cplx_su1_N