mRNA_Ecto-sp8_S_contig103978.641.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103978.641.1
Unique NamemRNA_Ecto-sp8_S_contig103978.641.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: D7FV78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV78_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.400e-41
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS 207
            NLLTPEVPF+LDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS
Sbjct:  215 NLLTPEVPFSLDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS 283          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A836CEB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEB8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.640e-25
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS 207
            +LLTP +PFALDY EV FSLC+++C++Y K +EEECY N  V++ LVKVD K+K H++NV AKEFT+MS
Sbjct:  145 HLLTPPLPFALDYFEVFFSLCDIICQVYNKLMEEECYSNVHVFEALVKVDAKVKRHVLNVTAKEFTEMS 213          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A7S2CN58_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CN58_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.710e-21
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS 207
            +L TP V F LDY EV+FSLC+V+  +Y KFV+EE ++N+ V+D LVK D++IKHH+IN+ AKE TD+S
Sbjct:   73 HLQTPHVAFELDYREVLFSLCDVLSLLYNKFVDEEIWQNSAVFDMLVKADSRIKHHVINLLAKELTDLS 141          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A7S2GL83_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GL83_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.450e-19
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS 207
            +L+TP VPF +DY+EV+ SLC+V+  +Y K V  E +++  VYD LV+VD++IKHHIIN  AKE TD+S
Sbjct:   15 HLVTPHVPFPIDYVEVIHSLCDVLVLVYHKLVHCESWQSPAVYDMLVRVDSRIKHHIINRIAKELTDLS 83          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A7S3MFY2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFY2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.420e-16
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTD 201
            +L  P +PF LDYLEV   LC  + ++Y K + EECY N  +YD +V++D ++KHHIIN+ +KE TD
Sbjct:  182 HLRLPHIPFELDYLEVFTGLCVELSKLYEKLIHEECYANQIIYDTIVRLDTRVKHHIINLVSKEVTD 248          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A8K1C382_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C382_PYTOL)

HSP 1 Score: 70.5 bits (171), Expect = 1.390e-12
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEE-CYKNAFVYDGLVKVDNKIKHHIINVFAKEFT 198
             LLTP +PF LDY EV+ SLC+++  +Y+KFVE+  C +N F++  +V+ D KIK  +I+   KEF+
Sbjct:  320 RLLTPSIPFPLDYREVMLSLCDILALVYSKFVEDNICSENIFLFQAIVRFDEKIKKLVIDPVKKEFS 386          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A7R9Y7M0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7M0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.190e-11
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIIN 177
             L  P++   +DY E++ SLCE +  +Y KF+E +CY NA ++D L+++D K+K H++N
Sbjct:  200 RLCLPQLSIEIDYFELIISLCETLTLLYKKFLESDCYSNALLFDALMRMDAKVKQHLVN 258          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A1V9ZQC0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQC0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.710e-11
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS 207
             LLTP + F LDY ++V S CEV+  IYAKF+++ C +N FV+  +++ D KIK  ++   +K+   +S
Sbjct:  349 RLLTPNISFPLDYNQLVVSACEVLTHIYAKFMDDACSRNQFVFQAVLRFDEKIKKSLLEAISKQLAAIS 417          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A485KZ76_9STRA (Aste57867_13517 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZ76_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.910e-10
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS 207
             L+TP VPF L+Y +VV SLCEV+  +Y + V++ C  N  V+  L++ D KIK   +   +K+ T ++
Sbjct:  165 RLVTPNVPFPLEYCQVVVSLCEVLTLVYGRVVDDVCSSNPCVFQALLRFDEKIKKFFLESISKQLTTIA 233          
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Match: A0A4D9CUK2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUK2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-9
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECY---KNAFVYDGLVKVDNKIKHHIINVFAKEFTDMS 207
            N   P +PF LDYLEV+ SLC  +  +Y +          ++A +++ LVK+D K+KHHIIN  AKE T ++
Sbjct:  201 NFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGHRHAASLERDAALFEVLVKIDAKVKHHIINPIAKELTSLA 272          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103978.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV78_ECTSI4.400e-4198.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEB8_9STRA2.640e-2562.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CN58_9STRA4.710e-2157.97Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2GL83_9STRA2.450e-1955.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3MFY2_9STRA1.420e-1649.25Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1C382_PYTOL1.390e-1246.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7R9Y7M0_9STRA1.190e-1140.68Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1V9ZQC0_9STRA1.710e-1140.58Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485KZ76_9STRA2.910e-1039.13Aste57867_13517 protein n=1 Tax=Aphanomyces stella... [more]
A0A4D9CUK2_9STRA1.010e-941.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103978contigEcto-sp8_S_contig103978:2..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score142.1
Seed ortholog evalue9.6e-32
Seed eggNOG ortholog2880.D7FV78
Model size207
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2ADY6@1,2RYUG@2759
Cds size207
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143138.6699657-CDS-Ecto-sp8_S_contig103978:1..1031681143138.6699657-CDS-Ecto-sp8_S_contig103978:1..103Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103978 2..103 +
1681143138.6865482-CDS-Ecto-sp8_S_contig103978:417..5221681143138.6865482-CDS-Ecto-sp8_S_contig103978:417..522Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103978 418..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103978.641.1prot_Ecto-sp8_S_contig103978.641.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103978 2..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103978.641.1

>prot_Ecto-sp8_S_contig103978.641.1 ID=prot_Ecto-sp8_S_contig103978.641.1|Name=mRNA_Ecto-sp8_S_contig103978.641.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=69bp
NLLTPEVPFALDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVD
NKIKHHIINVFAKEFTDMS
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mRNA from alignment at Ecto-sp8_S_contig103978:2..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103978.641.1 ID=mRNA_Ecto-sp8_S_contig103978.641.1|Name=mRNA_Ecto-sp8_S_contig103978.641.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=521bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103978:2..522+ (Ectocarpus species8 EcLAC_412)
AACTTGCTAACGCCCGAGGTCCCGTTCGCGCTGGACTACTTGGAGGTAGT GTTCTCACTATGCGAGGTCATGTGCCGCATTTACGCCAAGTTTGTGGAAG AGGTGAGTAACAGACAGACAGACAGACAGACAGACAGACAGGCGACCATG CAGCTGTGTATCAGGTGTGTATCCAATCTGCCAGAATGGGAACTGCAATT GTGCGACATCGTTTTTCATCACTACTGCTGTGCTGTCATGACGCCTCATT CAATGCTTCCCGCATCCGATTTTCCGTATCGCCCTGCCCGCGCCTCATGG ACTAGTGTCGTGGCGGCGGTGGTGGCCACATGCCCGAACATGCAGCATGT CCTCATCTGGAGTGCGGTCGGTCGCGCTGCTTTCTTTTTGTTTTTCATCC TAACCCTAACCCGTAGGAGTGCTACAAGAACGCCTTCGTGTACGATGGCT TGGTCAAAGTAGACAACAAGATCAAGCACCACATCATCAACGTCTTTGCC AAGGAGTTCACCGACATGAGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103978:2..522+

>mRNA_Ecto-sp8_S_contig103978.641.1 ID=mRNA_Ecto-sp8_S_contig103978.641.1|Name=mRNA_Ecto-sp8_S_contig103978.641.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103978:2..522+ (Ectocarpus species8 EcLAC_412)
AACTTGCTAACGCCCGAGGTCCCGTTCGCGCTGGACTACTTGGAGGTAGT
GTTCTCACTATGCGAGGTCATGTGCCGCATTTACGCCAAGTTTGTGGAAG
AGGAGTGCTACAAGAACGCCTTCGTGTACGATGGCTTGGTCAAAGTAGAC
AACAAGATCAAGCACCACATCATCAACGTCTTTGCCAAGGAGTTCACCGA
CATGAGC
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