prot_Ecto-sp8_S_contig9753.31504.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9753.31504.1
Unique Nameprot_Ecto-sp8_S_contig9753.31504.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length236
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9753.31504.1 vs. uniprot
Match: D8LCF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF4_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 5.710e-71
Identity = 134/151 (88.74%), Postives = 137/151 (90.73%), Query Frame = 0 
Query:   51 LARIPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQPSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTAXXXXXXGDRTGXXXXXXXXXXXXXXXXXXE----KTEFSFAAQVCAWDSRAEEEA 197
            +++IPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQPSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTA      GDRTG   XXXXXXXXXXXXXXX     KTEFSFAAQVCAWDSRAEEEA
Sbjct:   34 ISQIPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQPSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTAGPTGSAGDRTGGDGXXXXXXXXXXXXXXXXXXXXKTEFSFAAQVCAWDSRAEEEA 184
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BLAST of mRNA_Ecto-sp8_S_contig9753.31504.1 vs. uniprot
Match: A0A6H5KWZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ4_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.910e-61
Identity = 126/153 (82.35%), Postives = 129/153 (84.31%), Query Frame = 0 
Query:   51 LARIPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQ--PSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTAXXXXXXGDRTGXXXXXXXXXXXXXXXXXX---EKTEFSFAAQVCAWDSRAEEEAQ 198
            +++IPRLQFFLGC LYVLHNACAWLYVRGCLPPAQW LQQQ  PSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALR PADP   A     X     XXXXXXXXXXXXXXXXXX   E T  SFAAQVCAWDSRAEEEAQ
Sbjct:   45 ISQIPRLQFFLGCTLYVLHNACAWLYVRGCLPPAQWTLQQQQQPSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALREPADPGGAAGATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXEATNISFAAQVCAWDSRAEEEAQ 197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9753.31504.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCF4_ECTSI5.710e-7188.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWZ4_9PHAE1.910e-6182.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021980Transcription factor homeodomain, male germ-cellPFAMPF12129Phtf-FEM1B_bdgcoord: 8..130
e-value: 1.5E-9
score: 37.9
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..77
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..52
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 78..110
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..133
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 134..236
NoneNo IPR availableTMHMMTMhelixcoord: 30..52
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
NoneNo IPR availableTMHMMTMhelixcoord: 59..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9753contigEcto-sp8_S_contig9753:2..5922 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9753.31504.1mRNA_Ecto-sp8_S_contig9753.31504.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9753 2..5922 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9753.31504.1 ID=prot_Ecto-sp8_S_contig9753.31504.1|Name=mRNA_Ecto-sp8_S_contig9753.31504.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=236bp
KLQDETPTEYFDLNVLKGAVSFNTKPFKHRALVWIGFKKVLLFPFCWSWW
LARIPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQPSWGGLGAE
GGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTAGTTG
STGDRTGGGGGGGGGAPGGGSGGGGEKTEFSFAAQVCAWDSRAEEEAQAA
GDGEEDDDDDCDSSSGPGSDNDDSGDAGDNPPGGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021980TF_homeodomain_male