mRNA_Ecto-sp8_S_contig9753.31504.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9753.31504.1
Unique NamemRNA_Ecto-sp8_S_contig9753.31504.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9753.31504.1 vs. uniprot
Match: D8LCF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF4_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 5.710e-71
Identity = 134/151 (88.74%), Postives = 137/151 (90.73%), Query Frame = 1 
Query:  151 LARIPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQPSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTAXXXXXXGDRTGXXXXXXXXXXXXXXXXXXE----KTEFSFAAQVCAWDSRAEEEA 591
            +++IPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQPSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTA      GDRTG   XXXXXXXXXXXXXXX     KTEFSFAAQVCAWDSRAEEEA
Sbjct:   34 ISQIPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQPSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTAGPTGSAGDRTGGDGXXXXXXXXXXXXXXXXXXXXKTEFSFAAQVCAWDSRAEEEA 184
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BLAST of mRNA_Ecto-sp8_S_contig9753.31504.1 vs. uniprot
Match: A0A6H5KWZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ4_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.910e-61
Identity = 126/153 (82.35%), Postives = 129/153 (84.31%), Query Frame = 1 
Query:  151 LARIPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQ--PSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTAXXXXXXGDRTGXXXXXXXXXXXXXXXXXX---EKTEFSFAAQVCAWDSRAEEEAQ 594
            +++IPRLQFFLGC LYVLHNACAWLYVRGCLPPAQW LQQQ  PSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALR PADP   A     X     XXXXXXXXXXXXXXXXXX   E T  SFAAQVCAWDSRAEEEAQ
Sbjct:   45 ISQIPRLQFFLGCTLYVLHNACAWLYVRGCLPPAQWTLQQQQQPSWGGLGAEGGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALREPADPGGAAGATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXEATNISFAAQVCAWDSRAEEEAQ 197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9753.31504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCF4_ECTSI5.710e-7188.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWZ4_9PHAE1.910e-6182.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9753contigEcto-sp8_S_contig9753:2..5922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score242.3
Seed ortholog evalue2.3e-61
Seed eggNOG ortholog2880.D8LCF4
Preferred namePHTF1
Model size710
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005801,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Exons4
EggNOG free text desc.transcription, DNA-templated
EggNOG OGs28I6J@1,2QQGQ@2759
Cds size708
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145341.4884856-CDS-Ecto-sp8_S_contig9753:1..3821681145341.4884856-CDS-Ecto-sp8_S_contig9753:1..382Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9753 2..382 -
1681145341.5040329-CDS-Ecto-sp8_S_contig9753:711..8791681145341.5040329-CDS-Ecto-sp8_S_contig9753:711..879Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9753 712..879 -
1681145341.514892-CDS-Ecto-sp8_S_contig9753:5354..54601681145341.514892-CDS-Ecto-sp8_S_contig9753:5354..5460Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9753 5355..5460 -
1681145341.5246732-CDS-Ecto-sp8_S_contig9753:5869..59221681145341.5246732-CDS-Ecto-sp8_S_contig9753:5869..5922Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9753 5870..5922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9753.31504.1prot_Ecto-sp8_S_contig9753.31504.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9753 2..5922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9753.31504.1

>prot_Ecto-sp8_S_contig9753.31504.1 ID=prot_Ecto-sp8_S_contig9753.31504.1|Name=mRNA_Ecto-sp8_S_contig9753.31504.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=236bp
KLQDETPTEYFDLNVLKGAVSFNTKPFKHRALVWIGFKKVLLFPFCWSWW
LARIPRLQFFLGCALYVLHNACAWLYVRGCLPPAQWRLQQQPSWGGLGAE
GGNHVMHVEILLPYVIGFLFGIGYGSVVAAGGWEALRVPADPSDTAGTTG
STGDRTGGGGGGGGGAPGGGSGGGGEKTEFSFAAQVCAWDSRAEEEAQAA
GDGEEDDDDDCDSSSGPGSDNDDSGDAGDNPPGGGG
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mRNA from alignment at Ecto-sp8_S_contig9753:2..5922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9753.31504.1 ID=mRNA_Ecto-sp8_S_contig9753.31504.1|Name=mRNA_Ecto-sp8_S_contig9753.31504.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5921bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9753:2..5922- (Ectocarpus species8 EcLAC_412)
AAACTTCAGGATGAAACGCCCACGGAGTACTTCGACTTGAACGTGCTGAA
AGGGTAAGCTAGCCATAACGAAATTTACTGAATGTATCATTTAGGGTTGG
GCACCCTGAAGGGACCTATGTGTAGGCCCAAACCAACGACCATCGACGAA
CAGCTCTCACGGTTGATGTGTCAGCTGTCGTACTCGTATCTGTGTCGCGA
GCGGGTATGGAGGAGGAAGCTTTTGTACATACGTGGGAGCCCTAGAGCAG
CAGCAGCAGTGCCTTGTGGCCTACCAATGCGTAGGATTTGAAAGTTTTCA
ACGTCTGGGAAAGCTGCCGCTGGTGTCCTGCAGACCCAGCACCGTTGCTA
GATTCTATGCATACTCTACCAAGGCGTGCCGTGTGAGTGTTGTTGGTGAA
CTCTCTTTTTCTGTTGCACCCCGACAAACATGAAATCGCCCGCCTCGTTG
CGCGAAACACAGCGCGGTCTCGTTCAACACCAAGCCGTTCAAGCACCGGG
CGCTGGTTTGGATCGGCTTCAAGAAGGTCTTGCTATTCCCATTCTGCTGG
AGCTGGTGGTTGGCTCGGGTAAGCGAAGGTCTGCTGTACGTCGTGGGACG
GAGTCTAGTCTAGTCTGTTTGTGGTATCATACTATAGCACGCCTGCTGTT
TATCGCCCCCACCGCAAACGGTCGGACAGAATCCAGCTGGGCCAGAATTC
GTAGCAACAGAGCAGCACCGCACAGCAGGCAAGTGTAGTGTTTGTCATGG
TGGAGTTTCTGCACCGCCGTAACAGCAGGATCTCCTGCTGTTGGCGTCCT
GGTGCGCATGCATCATGCCGAACACTATTATTGTACATATGAATTGGGGA
CCACGATCTGTGGTAGTTTGCGCATGCAGAACCCACCGTCGCCCTCGATC
ACCGCAACCCGGAGAGATTGTTCTGGTTTCTTCTGAGTGTGGTGCAGGTC
AACACCGATCAGCCCACGACTGCTGTATAATACATTCACCAGCGGCGGCA
TCCGCGACGCCCTCGCTTGCGTTACTACACGCCGCGTGTTCGTCCAATCT
CGGCCGACGAAAAAATTCTGGGCGGGTCATTGTTTAGTCAACATTCGTTA
AACACAAATCAGGGAGAGATCCCATTCGAGACAGCAGAGAGAGGCGGACA
GATGGCACCAGGATTGTTGTTGTTGTCTTCACATCAAAAAAGAAACCGTT
CCGATCCATCTCTCTCTTCCCAGTACCTTCATATGTCCGTACTGATCCAA
CACTTGACGCGGTCGATTCCCGTGGTCACAGGCTAACTTATAACTTACCC
TAAAACAGTACACTCAAATATACTGGCCCCGAGGGGTCCGCAAGTCAATA
GAAATCAACGAGAGATATTCTGGAGTCCTCCGCTCCCTCTGCGCGCTATG
CGAGGTAACCACTAGGAGTCAGCATCACGGGCCAGAGAGAAAGAGGTACA
CCCCCTTGGTTCAATCTTGGTGCTTGACACGCAAGCAGAGACAAGGCCGT
CTGACACAGAAAAAAGAGAGAAAAAAGACCGACAAAGAAAAAGAGAAAAA
ATAAATAAATACCACAGGATATGCGAACCACTTTTTTTTTACAGTTTTTT
TTTTTTATGTGCTTTCGCACATCGAAGAGTCTGTCCGTCCGACAGGTGCC
ATCTCTCCACGCCGGAAATACCTTAAAACAACTATAGAATACATACATAA
ATCGCATCGTTTTACGGCAGAAGTGGGCCCGTCAACAACGCCGGTTTGAA
TGACGCCGGGTAGCCCTACTGGATATACATCGCTCCGTGCGGTGAAATTG
CTGGGCACAGGCCGAATCATCATGTCTTTGAATGGCGCCGGTCCCTCTGT
GTGGCCCCGGTCGATTGGCCGGGCGCATACCGGCGTTGTTGAGGGGGCCC
ACTATGTAATAGATACGTCCTGCTGCTGTAGCTTTTTCGAGGCACCCCGG
TATGATGTCTTCGATATGGGAGATACTGTCAGCATCCTTGCTGGTGGCAC
GGCGGTGTTGTATGCACGCACCCCGGTTGCTATTTCCCCGACCGGTGTCA
TCTCGCCGCCTGCAAGTATTGGTATGTACCGATGTAGATATCTACAAGCA
GACGGATGTTGCGGTGTGCGTAAGGCTTAATATTGTAGGCAAACCTACGT
TGTTGTTGTCTTCACATTAAAAACCGTTCCGGTCTCCGCTCAGTACCTTC
TATCGTCCGTACTGGTCCAACTGACGCGGAAGCCTTCCGTGGTCACAAGC
CAACTGCCCCCAGAGGGTGGTACACGGTAGAACTGTCCCAGTCTCCGCCC
GGCAATATCCGTACCGGTCCAACTGACGCGGACGCCGTCCGTGGTCACAT
GCAGGACGAAAAAATGAAAAAACGATGTGGTTTCCGTCTGGGGTGCCAAT
ACACACGGGGGCGGTAGCACCACTTGTTCTACCGCCTTCGTTTCGAGGCA
CGCAGCAGCTTCTTGAGTTTTACTTGCGTAAGGTGGGGTAGGTTGCGACT
TGAATCTCGCAACTTATTTTGCGATGAAATGGAATGAAATGAAATGAAAA
CGTGAGATTCGGCGTGAACCGCGACGGTACACGTGTACCACATTCGTAAG
GAGTGGCGCTCCGCAGACACCGTCAGCACGTGTGAAGGGAAAGGGTGTGC
CCATGGCATCTTTCTTTCGGCAGGTACAAAAACAGCTCAATGTTGGGTCT
GGGGGTCGGTGAATTCGTACCACCGGGATGGATGTGTCAAGTCTTCGGTG
TTTGTGTTGGGAAGAACCTATTGGGTACTGGAGCGAGGTAGGTAATTTGA
GTTTGCTTGGGGCTGGTCTTGACCGGAATTGTGCACCCAGACTGGACGCA
CAGACCAAGAGTTGGAGCGGAACCACCGATCCACAGAACTCTGGGAGTAA
AATTGTTGCGGGCCCTTAACTCGCGTCCTACCACAGCTAGAGTTGGAGGT
GAGTGTGCGGCACAACCCCAAGTAGACTGTGATGCAGGTTGCGCTGATGT
ACAGGTGTATGGAGATGGTGTTACCGCCAGTGAGCCCTTTGAAAGCTGCG
CGGGCCGGGAACAACCAGTAGCACAAACTCGGAGAAAGGGGTGCAAAACC
GCAGAAAACGGGGGGCACATGCTGCGGTTTTACACATCCTTGCGGCGCTA
GCTGCTATTTCTACTTTTCGCGCTGCTGTTGGTCAGCTTTGCAAGGGGTA
CACACTAATGTTTTGCTCAAGGGTTGGCTGTGGAGCCCGTTGTGTGTGGT
GTGCGAGTGTAAAGACTCTCCAAAGTGCTGCATAGCAACGTGGCAAAGAA
TGGGGCAACTGCAGCAGTCGTGCAGTCTTGCGAAAATATTCACAAAAACA
AAAGACTATCCGTTTATATATACTCGGAGTGGGAGTATATGATATAACCA
CAGAATAGACAGTCAAGGGCATGTGTTGAAAGTAGTTTCAGTTAGTGGAC
GGAAACCGGCTGTACTCTTTGCCATCTTACCTTGAGTAGACCGGCTTTTA
GGAGCTCTGGGTTGTACGGTTCGCCAAGATGGGGGCTTGATTTTTTGCTT
TTCCTAGTATGACCCAACGAATCCATCTCTATCTAAGAAAAGAGTCTAAG
ATAAATAAGCAATGAATCCACAGCGTCAGCGAAGGCTCCCTGTATTTCCA
CGATTTCCCGAGCAGCACACAACGATATGTCCCCTGTGGTTAACACAGGC
TCAACAAGACAGTTTGGTAGCCGTCTTGTGCATCTCTCTCTATGTTATGC
TGGGAAGGAAGGTGTAGAAGGAAGGTGTTGGGTGGTTGGTTCGTCGGGTG
TGCTGGTGGTGGTACCCTGAAGAAAAGCACAGCACACACACGGTAATACA
TTTTTACTCCGTGTTGTCCGCGCGTTGATCCCTTGCTGGCGGCGCGTGGT
TGCGGAGTGACGGTGTCAGGATTTATGCGTAGGCGAGCTTCAGCTGAGAG
ATTGGAATAGATGCCGCCCTGTGTCAGTCATGATGTGAACCAGCCGTTAG
GAGCAGAGCCGTACGGTCGCTACAGCTTTTACATACCCGTCCTTCTTGAA
GTCCTGTCGGAGATGCCTACGTGCACAACGGCTGGATCCGAAACGCCGGC
TACTCCGCAAACCAAGAGAGGAGAAGGGGGCAGCTAAAGCACAATGACCG
CTGTCTTATCCTCGTTCCGTCTTTTTCCGCGTACACGGTTTGCTGGCTCT
TTCGGGGTGATGTAGCAGATATTTTCCGGCGGCGGCGTGTTCGAAGTATG
TAGAACTTTCACACCTATGTGTGTGTGTGTGTGTGTGTGAAGGATGAAGG
ATAACAAGTGTGACAGGGTGGGAAAGGGGAAGCTTTTGATTATATCATTT
TCACATACATACCTGCAAATGTTAGACCGCTGTTCTGACCCGGAGTTCAG
CTTGCAGGAAAACTGCATCTGAACAAAACTAAAGCGCGGTCTTGCCATCA
TTTTCACCCAGTCAAACCGGCTTTTGGATCTTTCCGTTTCAACTCTTGCT
CTGGGTGCACAAGTCCAATTAAGACCGTCCCTTGAGGGTACGAACTGAAC
GATCGGTGCCTTTACCTGCCACGCCTTGGACGGAAACAGGCCTGTTAAAG
TTAACTTTCCTTTGTCTACTGCCACTGCTGTGACAGGGTGGTCGTTACCG
CTGCCGCTTTTGTCTGAGCCCCGGCCCAACGGGGCGCTAACCTCTGCACC
CAAGCAGACGCCTAGCCGCCCATCTCTATCTCTCTCTTTGACGTGTCCTC
GATATTGTGCAAGCTATATATATCCTTCTTGCCTCGTTTTTTTGTACAGC
AGTACAAGGGCAATAGGAAGCTAAGCGACACAGCGTTGGTAATGTCATAA
ATGGCATACCATGTACCTTAACTGCTTTCGTGATGTATACTCATGATGGT
CCCCCCGTCCTCCTTCCAACTTCCAACGGCCGCCGTGTCCAATCCGTTTC
TGCCTGCACCTCCTGCGCGTATCTCTGGCCGGGCCGTGGCCGGTCTTCTC
GTTGGGGGACTAACAACAACCACAACGGCAACGAATATCGCAGATCCCTC
GGCTGCAGTTTTTCCTGGGATGCGCGCTCTACGTGCTGCACAACGCGTGC
GCGTGGCTCTACGTCCGGGGCTGCCTACCGCCGGCGCAGTGGAGGCTGCA
GCAGCAGCCATCCTGGGGAGGGCTTGGCGCAGAAGGAGGCAACCACGTCA
TGCACGTTGAGGTACGCTGGTGCTGGTTCTGGTGTGGCTGTGGTGCTTTT
GTTTCCTTTTTTAACATATTCCACGGCAGTTGAGGTGCTTTGTTTGTTTT
GGCGGCGACGGCGATTTGTGGAAGGTGCTGTTGTTTTCTCACGTTTAACA
AGTAGGGAACGGACCACACACTCTTCCTTATTATACAGCAGTAATCTCGT
CCAACTCGTATGGTGCGTTGATGGCCTTACGTTGCGCGGCACAAACAAGC
TATTACTTACTGTCCCTACACGTGGGGAGATAAAAAACGAAAACCTTCGA
CTGTGTTTTTATTTATTTATTGTCTCGCCTTTTTTGGCAGATCCTGCTGC
CGTACGTGATCGGATTCCTGTTCGGCATCGGCTACGGCTCCGTCGTGGCT
GCCGGGGGCTGGGAAGCATTGCGCGTGCCCGCCGACCCGAGCGACACCGC
CGGGACGACCGGCAGCACCGGCGATAGGACCGGCGGTGGCGGTGGCGGTG
GCGGTGGCGCCCCCGGCGGCGGTAGCGGCGGCGGCGGAGAGAAGACGGAA
TTTTCCTTCGCGGCGCAGGTTTGCGCCTGGGACAGCCGCGCGGAAGAGGA
GGCGCAGGCCGCCGGCGACGGCGAGGAGGACGACGACGACGACTGCGATT
CGTCGTCGGGCCCCGGCAGCGACAACGACGACTCGGGCGACGCGGGGGAT
AACCCCCCCGGCGGTGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9753:2..5922-

>mRNA_Ecto-sp8_S_contig9753.31504.1 ID=mRNA_Ecto-sp8_S_contig9753.31504.1|Name=mRNA_Ecto-sp8_S_contig9753.31504.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9753:2..5922- (Ectocarpus species8 EcLAC_412)
AAACTTCAGGATGAAACGCCCACGGAGTACTTCGACTTGAACGTGCTGAA
AGGCGCGGTCTCGTTCAACACCAAGCCGTTCAAGCACCGGGCGCTGGTTT
GGATCGGCTTCAAGAAGGTCTTGCTATTCCCATTCTGCTGGAGCTGGTGG
TTGGCTCGGATCCCTCGGCTGCAGTTTTTCCTGGGATGCGCGCTCTACGT
GCTGCACAACGCGTGCGCGTGGCTCTACGTCCGGGGCTGCCTACCGCCGG
CGCAGTGGAGGCTGCAGCAGCAGCCATCCTGGGGAGGGCTTGGCGCAGAA
GGAGGCAACCACGTCATGCACGTTGAGATCCTGCTGCCGTACGTGATCGG
ATTCCTGTTCGGCATCGGCTACGGCTCCGTCGTGGCTGCCGGGGGCTGGG
AAGCATTGCGCGTGCCCGCCGACCCGAGCGACACCGCCGGGACGACCGGC
AGCACCGGCGATAGGACCGGCGGTGGCGGTGGCGGTGGCGGTGGCGCCCC
CGGCGGCGGTAGCGGCGGCGGCGGAGAGAAGACGGAATTTTCCTTCGCGG
CGCAGGTTTGCGCCTGGGACAGCCGCGCGGAAGAGGAGGCGCAGGCCGCC
GGCGACGGCGAGGAGGACGACGACGACGACTGCGATTCGTCGTCGGGCCC
CGGCAGCGACAACGACGACTCGGGCGACGCGGGGGATAACCCCCCCGGCG
GTGGCGGC
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