prot_Ecto-sp8_S_contig95470.31165.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig95470.31165.1
Unique Nameprot_Ecto-sp8_S_contig95470.31165.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length72
Homology
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 7.160e-29
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 0
Query:    8 LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMVE 72
            LS     RDMIARAEDESYGYVMSAYVMIRVARKCPS+RD+LEGCGNPLPRLVQQHAEDILE+VE
Sbjct:  522 LSALWSWRDMIARAEDESYGYVMSAYVMIRVARKCPSSRDDLEGCGNPLPRLVQQHAEDILEIVE 586          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.500e-12
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 0
Query:   13 DARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 71
            D RD +AR EDES GYVMSAY+M+R+AR  P++ D L  C  PLP LVQQ +++++ ++
Sbjct:  289 DWRDALAREEDESPGYVMSAYLMLRLARAAPASHDALVRCAAPLPPLVQQRSDEVIALL 347          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A816G701_9BILA (Hypothetical protein (Fragment) n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A816G701_9BILA)

HSP 1 Score: 60.1 bits (144), Expect = 4.340e-10
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 0
Query:    1 FGSRNLP-LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMVE 72
            F  R L  L   +  RD +AR EDES GYV+  Y+++R++   P   +++  C NP P LV+Q+  DI ++V+
Sbjct:   20 FNVRQLATLKSLYHWRDKLARTEDESTGYVLPNYMLLRISEMLPKTAEDIRACCNPTPILVRQNLHDIYQIVQ 92          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A7S4D1L5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D1L5_9EUGL)

HSP 1 Score: 57.0 bits (136), Expect = 9.320e-8
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   15 RDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 71
            RD +ARAEDES GYV+ + +M+++AR+ P+   +L  C NP+P LV++    +L+++
Sbjct:  446 RDSVARAEDESTGYVLPSAMMLQLAREMPTTTAKLSECCNPVPALVRRDGRHLLDLI 502          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI00063F7F08 (exosome component 10 isoform X1 n=2 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00063F7F08)

HSP 1 Score: 53.9 bits (128), Expect = 1.140e-6
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    8 LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 71
            L E H  RD++AR ED+S GYV+  ++++ +A   P     +  C NP+P LV+Q+   I +MV
Sbjct:  493 LLELHKWRDLVAREEDDSIGYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRQNLLKIHKMV 556          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI001CFBD4A7 (exosome component 10-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBD4A7)

HSP 1 Score: 53.1 bits (126), Expect = 2.070e-6
Identity = 21/57 (36.84%), Postives = 38/57 (66.67%), Query Frame = 0
Query:   15 RDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 71
            RD +AR +DES GYV+  ++M+++A + P     +  C NP+P LV+Q   ++L+++
Sbjct:   85 RDRMARTQDESVGYVLPNHMMLKIAEELPKEPPGILACCNPVPPLVRQQINELLQLI 141          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI001D0833FC (exosome component 10 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0833FC)

HSP 1 Score: 53.1 bits (126), Expect = 2.120e-6
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 0
Query:    1 FGSRNLP-LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 71
            F +R L  L + +  R+M AR EDES GYV+  ++M+++A   P  +  +  C NP+P LV+Q+   + +M+
Sbjct:  448 FNNRQLSALRQLYHWREMTARTEDESLGYVLPTHMMLQIAEILPREQQGILACCNPVPPLVRQNLLTLNKMI 519          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A834VC45_SARSC (Exosome component 10 n=2 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834VC45_SARSC)

HSP 1 Score: 52.8 bits (125), Expect = 2.890e-6
Identity = 22/57 (38.60%), Postives = 38/57 (66.67%), Query Frame = 0
Query:   15 RDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 71
            RDM+AR +DES GYV+   +++++    P  +  +  C NP+P LVQQ+ ++I E++
Sbjct:  501 RDMLARQQDESTGYVLPNNLLLKICEILPREQQGVLACCNPMPPLVQQYIQEIHELI 557          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI0008522541 (exosome component 10 n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=UPI0008522541)

HSP 1 Score: 52.4 bits (124), Expect = 3.980e-6
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    8 LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 71
            L E H  RD+IAR ED+S GYV+  ++++ +A   P     +  C NP+P LV+Q+   I ++V
Sbjct:  469 LVELHRWRDLIAREEDDSIGYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRQNLLKIHKIV 532          
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI001C9BD7C3 (exosome component 10 n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BD7C3)

HSP 1 Score: 52.4 bits (124), Expect = 3.980e-6
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 0
Query:    1 FGSRNL-PLSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQH 63
            F +R L  L E H  RD+ AR ED+S GYV+  ++++ +A   P     +  C NP+P LV+Q+
Sbjct:  479 FNNRQLYALRELHQWRDVTARQEDDSTGYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRQN 542          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI7.160e-2987.69HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CIH7_9STRA5.500e-1252.54Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr... [more]
A0A816G701_9BILA4.340e-1038.36Hypothetical protein (Fragment) n=1 Tax=Didymodact... [more]
A0A7S4D1L5_9EUGL9.320e-842.11Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
UPI00063F7F081.140e-639.06exosome component 10 isoform X1 n=2 Tax=Monomorium... [more]
UPI001CFBD4A72.070e-636.84exosome component 10-like n=1 Tax=Protopterus anne... [more]
UPI001D0833FC2.120e-636.11exosome component 10 n=1 Tax=Chrysoperla carnea Ta... [more]
A0A834VC45_SARSC2.890e-638.60Exosome component 10 n=2 Tax=Sarcoptes scabiei Tax... [more]
UPI00085225413.980e-639.06exosome component 10 n=1 Tax=Cyphomyrmex costatus ... [more]
UPI001C9BD7C33.980e-639.06exosome component 10 n=1 Tax=Venturia canescens Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.80coord: 4..72
e-value: 9.8E-16
score: 59.4
NoneNo IPR availablePANTHERPTHR12124:SF47EXOSOME COMPONENT 10coord: 11..71
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 11..71
IPR002121HRDC domainPFAMPF00570HRDCcoord: 13..71
e-value: 5.0E-12
score: 45.6
IPR002121HRDC domainPROSITEPS50967HRDCcoord: 1..72
score: 11.712
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 13..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95470contigEcto-sp8_S_contig95470:355..570 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95470.31165.1mRNA_Ecto-sp8_S_contig95470.31165.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig95470 355..570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig95470.31165.1 ID=prot_Ecto-sp8_S_contig95470.31165.1|Name=mRNA_Ecto-sp8_S_contig95470.31165.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=72bp
FGSRNLPLSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELE
GCGNPLPRLVQQHAEDILEMVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002121HRDC_dom
IPR010997HRDC-like_sf