mRNA_Ecto-sp8_S_contig95470.31165.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95470.31165.1
Unique NamemRNA_Ecto-sp8_S_contig95470.31165.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 7.160e-29
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:   22 LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMVE 216
            LS     RDMIARAEDESYGYVMSAYVMIRVARKCPS+RD+LEGCGNPLPRLVQQHAEDILE+VE
Sbjct:  522 LSALWSWRDMIARAEDESYGYVMSAYVMIRVARKCPSSRDDLEGCGNPLPRLVQQHAEDILEIVE 586
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.500e-12
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   37 DARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 213
            D RD +AR EDES GYVMSAY+M+R+AR  P++ D L  C  PLP LVQQ +++++ ++
Sbjct:  289 DWRDALAREEDESPGYVMSAYLMLRLARAAPASHDALVRCAAPLPPLVQQRSDEVIALL 347
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A816G701_9BILA (Hypothetical protein (Fragment) n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A816G701_9BILA)

HSP 1 Score: 60.1 bits (144), Expect = 4.340e-10
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 FGSRNLP-LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMVE 216
            F  R L  L   +  RD +AR EDES GYV+  Y+++R++   P   +++  C NP P LV+Q+  DI ++V+
Sbjct:   20 FNVRQLATLKSLYHWRDKLARTEDESTGYVLPNYMLLRISEMLPKTAEDIRACCNPTPILVRQNLHDIYQIVQ 92
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A7S4D1L5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D1L5_9EUGL)

HSP 1 Score: 57.0 bits (136), Expect = 9.320e-8
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   43 RDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 213
            RD +ARAEDES GYV+ + +M+++AR+ P+   +L  C NP+P LV++    +L+++
Sbjct:  446 RDSVARAEDESTGYVLPSAMMLQLAREMPTTTAKLSECCNPVPALVRRDGRHLLDLI 502
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI00063F7F08 (exosome component 10 isoform X1 n=2 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00063F7F08)

HSP 1 Score: 53.9 bits (128), Expect = 1.140e-6
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   22 LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 213
            L E H  RD++AR ED+S GYV+  ++++ +A   P     +  C NP+P LV+Q+   I +MV
Sbjct:  493 LLELHKWRDLVAREEDDSIGYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRQNLLKIHKMV 556
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI001D0833FC (exosome component 10 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0833FC)

HSP 1 Score: 53.1 bits (126), Expect = 2.120e-6
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:    1 FGSRNLP-LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 213
            F +R L  L + +  R+M AR EDES GYV+  ++M+++A   P  +  +  C NP+P LV+Q+   + +M+
Sbjct:  448 FNNRQLSALRQLYHWREMTARTEDESLGYVLPTHMMLQIAEILPREQQGILACCNPVPPLVRQNLLTLNKMI 519
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A834VC45_SARSC (Exosome component 10 n=2 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834VC45_SARSC)

HSP 1 Score: 52.8 bits (125), Expect = 2.890e-6
Identity = 22/57 (38.60%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   43 RDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 213
            RDM+AR +DES GYV+   +++++    P  +  +  C NP+P LVQQ+ ++I E++
Sbjct:  501 RDMLARQQDESTGYVLPNNLLLKICEILPREQQGVLACCNPMPPLVQQYIQEIHELI 557
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI0008522541 (exosome component 10 n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=UPI0008522541)

HSP 1 Score: 52.4 bits (124), Expect = 3.980e-6
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   22 LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 213
            L E H  RD+IAR ED+S GYV+  ++++ +A   P     +  C NP+P LV+Q+   I ++V
Sbjct:  469 LVELHRWRDLIAREEDDSIGYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRQNLLKIHKIV 532
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: UPI001C9BD7C3 (exosome component 10 n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BD7C3)

HSP 1 Score: 52.4 bits (124), Expect = 3.980e-6
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 FGSRNL-PLSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQH 189
            F +R L  L E H  RD+ AR ED+S GYV+  ++++ +A   P     +  C NP+P LV+Q+
Sbjct:  479 FNNRQLYALRELHQWRDVTARQEDDSTGYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRQN 542
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BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Match: A0A151IGE3_9HYME (Exosome component 10 n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151IGE3_9HYME)

HSP 1 Score: 52.4 bits (124), Expect = 4.010e-6
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   22 LSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELEGCGNPLPRLVQQHAEDILEMV 213
            L E H  RD+IAR ED+S GYV+  ++++ +A   P     +  C NP+P LV+Q+   I ++V
Sbjct:  464 LVELHRWRDLIAREEDDSIGYVLPNHMLLNIAETLPREMQGILACCNPIPPLVRQNLLKIHKIV 527
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95470.31165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI7.160e-2987.69HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CIH7_9STRA5.500e-1252.54Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr... [more]
A0A816G701_9BILA4.340e-1038.36Hypothetical protein (Fragment) n=1 Tax=Didymodact... [more]
A0A7S4D1L5_9EUGL9.320e-842.11Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
UPI00063F7F081.140e-639.06exosome component 10 isoform X1 n=2 Tax=Monomorium... [more]
UPI001D0833FC2.120e-636.11exosome component 10 n=1 Tax=Chrysoperla carnea Ta... [more]
A0A834VC45_SARSC2.890e-638.60Exosome component 10 n=2 Tax=Sarcoptes scabiei Tax... [more]
UPI00085225413.980e-639.06exosome component 10 n=1 Tax=Cyphomyrmex costatus ... [more]
UPI001C9BD7C33.980e-639.06exosome component 10 n=1 Tax=Venturia canescens Ta... [more]
A0A151IGE3_9HYME4.010e-639.06Exosome component 10 n=1 Tax=Cyphomyrmex costatus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95470contigEcto-sp8_S_contig95470:355..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score116.7
Seed ortholog evalue4.5e-24
Seed eggNOG ortholog2880.D8LQE8
Model size216
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
Exons1
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
Cds size216
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145316.1495965-CDS-Ecto-sp8_S_contig95470:354..5701681145316.1495965-CDS-Ecto-sp8_S_contig95470:354..570Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95470 355..570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95470.31165.1prot_Ecto-sp8_S_contig95470.31165.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95470 355..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95470.31165.1

>prot_Ecto-sp8_S_contig95470.31165.1 ID=prot_Ecto-sp8_S_contig95470.31165.1|Name=mRNA_Ecto-sp8_S_contig95470.31165.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=72bp
FGSRNLPLSEKHDARDMIARAEDESYGYVMSAYVMIRVARKCPSNRDELE
GCGNPLPRLVQQHAEDILEMVE
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mRNA from alignment at Ecto-sp8_S_contig95470:355..570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95470.31165.1 ID=mRNA_Ecto-sp8_S_contig95470.31165.1|Name=mRNA_Ecto-sp8_S_contig95470.31165.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95470:355..570+ (Ectocarpus species8 EcLAC_412)
TTCGGTTCCCGAAATCTGCCTTTGTCTGAAAAACACGATGCCAGGGACAT
GATTGCCCGCGCTGAGGACGAGTCCTACGGCTACGTCATGTCCGCGTACG
TCATGATCCGGGTGGCGAGGAAGTGCCCGTCCAATCGCGACGAGCTCGAG
GGCTGCGGCAACCCCCTCCCACGCCTGGTGCAGCAGCACGCCGAGGACAT
ATTGGAGATGGTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95470:355..570+

>mRNA_Ecto-sp8_S_contig95470.31165.1 ID=mRNA_Ecto-sp8_S_contig95470.31165.1|Name=mRNA_Ecto-sp8_S_contig95470.31165.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95470:355..570+ (Ectocarpus species8 EcLAC_412)
TTCGGTTCCCGAAATCTGCCTTTGTCTGAAAAACACGATGCCAGGGACAT
GATTGCCCGCGCTGAGGACGAGTCCTACGGCTACGTCATGTCCGCGTACG
TCATGATCCGGGTGGCGAGGAAGTGCCCGTCCAATCGCGACGAGCTCGAG
GGCTGCGGCAACCCCCTCCCACGCCTGGTGCAGCAGCACGCCGAGGACAT
ATTGGAGATGGTGGAG
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