prot_Ecto-sp8_S_contig10209.342.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig10209.342.1
Unique Nameprot_Ecto-sp8_S_contig10209.342.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length136
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10209.342.1 vs. uniprot
Match: D7FVJ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVJ0_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 1.380e-92
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 0 
Query:    1 MSNRSRRTVVAETEPTFLQSCSTKWSKGLQRGARWDKDTFEDFPICVHWFRQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 135
            MSNRSRRTVVAE EPTF+QSCSTKWSKGLQRGARWDKDTFEDFP+CVHWFRQFMAAVAGICVG AGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGM HVLLN+A
Sbjct:    1 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGVAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMDHVLLNVA 135
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BLAST of mRNA_Ecto-sp8_S_contig10209.342.1 vs. uniprot
Match: A0A6H5JT26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT26_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.420e-32
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0 
Query:   77 FAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 135
            FAFVTGATYLYYARF+EADELSYGDQGLKWEGLLPSLTVFLLMWILSF+ MGHVLLNIA
Sbjct:   17 FAFVTGATYLYYARFLEADELSYGDQGLKWEGLLPSLTVFLLMWILSFHSMGHVLLNIA 75
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BLAST of mRNA_Ecto-sp8_S_contig10209.342.1 vs. uniprot
Match: A0A5B6UL68_9ROSI (Rab5-interacting n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UL68_9ROSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6
Identity = 41/115 (35.65%), Postives = 55/115 (47.83%), Query Frame = 0 
Query:   24 KWSKGLQRGARWDKDTFEDFPICVHWFRQFMAAVAGICVGFAGVTG--WFGLV----------GGFAFVTGATYLYYARFVEADELSYGDQG-LKWEGLLPSLTVFLLMWILSFN 125
            K++K L   A WDKD   D    +HW RQ +A   G+  G   V G  W  +           G     TG  Y YYA  ++ DE  +G    L  EGL+ S+T+FLL WIL ++
Sbjct:   25 KFAKLLDPEASWDKDQLGDV---LHWIRQVVALFYGLLWGAIPVVGGIWIFITVTTQAKDNYTGFSGHNTGIIYGYYAMTLKIDEEEFGGHAALLQEGLIASITLFLLAWILVYS 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10209.342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVJ0_ECTSI1.380e-9295.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT26_9PHAE5.420e-3294.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5B6UL68_9ROSI2.590e-635.65Rab5-interacting n=1 Tax=Gossypium australe TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029008Rab5-interacting protein familyPFAMPF07019Rab5ipcoord: 47..124
e-value: 4.2E-10
score: 40.1
IPR010742Rab5-interacting proteinPANTHERPTHR12906PROTEIN C20ORF24 RAB5-INTERACTING PROTEINcoord: 19..125
NoneNo IPR availablePANTHERPTHR12906:SF0PROTEIN TGIF2-C20ORF24coord: 19..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 108..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 89..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 133..135
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..54
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
NoneNo IPR availableTMHMMTMhelixcoord: 57..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10209contigEcto-sp8_S_contig10209:159..3464 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10209.342.1mRNA_Ecto-sp8_S_contig10209.342.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig10209 90..4559 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig10209.342.1 ID=prot_Ecto-sp8_S_contig10209.342.1|Name=mRNA_Ecto-sp8_S_contig10209.342.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=136bp
MSNRSRRTVVAETEPTFLQSCSTKWSKGLQRGARWDKDTFEDFPICVHWF
RQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYG
DQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029008Rab5IP_fam
IPR010742Rab5ip