mRNA_Ecto-sp8_S_contig10209.342.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10209.342.1
Unique NamemRNA_Ecto-sp8_S_contig10209.342.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10209.342.1 vs. uniprot
Match: D7FVJ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVJ0_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 3.730e-86
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:   70 MSNRSRRTVVAETEPTFLQSCSTKWSKGLQRGARWDKDTFEDFPICVHWFRQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 474
            MSNRSRRTVVAE EPTF+QSCSTKWSKGLQRGARWDKDTFEDFP+CVHWFRQFMAAVAGICVG AGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGM HVLLN+A
Sbjct:    1 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGVAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMDHVLLNVA 135
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BLAST of mRNA_Ecto-sp8_S_contig10209.342.1 vs. uniprot
Match: A0A6H5JT26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT26_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.170e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:  298 FAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 474
            FAFVTGATYLYYARF+EADELSYGDQGLKWEGLLPSLTVFLLMWILSF+ MGHVLLNIA
Sbjct:   17 FAFVTGATYLYYARFLEADELSYGDQGLKWEGLLPSLTVFLLMWILSFHSMGHVLLNIA 75
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BLAST of mRNA_Ecto-sp8_S_contig10209.342.1 vs. uniprot
Match: A0A5B6UL68_9ROSI (Rab5-interacting n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UL68_9ROSI)

HSP 1 Score: 53.5 bits (127), Expect = 5.650e-5
Identity = 41/115 (35.65%), Postives = 55/115 (47.83%), Query Frame = 1 
Query:  139 KWSKGLQRGARWDKDTFEDFPICVHWFRQFMAAVAGICVGFAGVTG--WFGLV----------GGFAFVTGATYLYYARFVEADELSYGDQG-LKWEGLLPSLTVFLLMWILSFN 444
            K++K L   A WDKD   D    +HW RQ +A   G+  G   V G  W  +           G     TG  Y YYA  ++ DE  +G    L  EGL+ S+T+FLL WIL ++
Sbjct:   25 KFAKLLDPEASWDKDQLGDV---LHWIRQVVALFYGLLWGAIPVVGGIWIFITVTTQAKDNYTGFSGHNTGIIYGYYAMTLKIDEEEFGGHAALLQEGLIASITLFLLAWILVYS 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10209.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVJ0_ECTSI3.730e-8695.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT26_9PHAE3.170e-2894.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5B6UL68_9ROSI5.650e-535.65Rab5-interacting n=1 Tax=Gossypium australe TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10209contigEcto-sp8_S_contig10209:90..4559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score274.2
Seed ortholog evalue3.2e-71
Seed eggNOG ortholog2880.D7FVJ0
Preferred nameC20orf24
Model size1572
KEGG koko:K12870
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.Rab5-interacting protein (Rab5ip)
EggNOG OGsKOG3415@1,KOG3415@2759
Cds size408
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.0201213-UTR-Ecto-sp8_S_contig10209:89..1581681143119.0201213-UTR-Ecto-sp8_S_contig10209:89..158Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10209 90..158 +
1681143119.0636563-UTR-Ecto-sp8_S_contig10209:3464..45591681143119.0636563-UTR-Ecto-sp8_S_contig10209:3464..4559Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10209 3465..4559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.0308158-CDS-Ecto-sp8_S_contig10209:158..2691681143119.0308158-CDS-Ecto-sp8_S_contig10209:158..269Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10209 159..269 +
1681143119.0397794-CDS-Ecto-sp8_S_contig10209:2292..24051681143119.0397794-CDS-Ecto-sp8_S_contig10209:2292..2405Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10209 2293..2405 +
1681143119.0487342-CDS-Ecto-sp8_S_contig10209:3280..34641681143119.0487342-CDS-Ecto-sp8_S_contig10209:3280..3464Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10209 3281..3464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10209.342.1prot_Ecto-sp8_S_contig10209.342.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10209 159..3464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10209.342.1

>prot_Ecto-sp8_S_contig10209.342.1 ID=prot_Ecto-sp8_S_contig10209.342.1|Name=mRNA_Ecto-sp8_S_contig10209.342.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=136bp
MSNRSRRTVVAETEPTFLQSCSTKWSKGLQRGARWDKDTFEDFPICVHWF
RQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYG
DQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA*
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mRNA from alignment at Ecto-sp8_S_contig10209:90..4559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10209.342.1 ID=mRNA_Ecto-sp8_S_contig10209.342.1|Name=mRNA_Ecto-sp8_S_contig10209.342.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4470bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10209:90..4559+ (Ectocarpus species8 EcLAC_412)
CAGGCAGCTGCACAGTGCAGCAGCTCGGACAAAGGACGGAAGCCCGCACC
GGCAGTTGAGAGAGAAGCCATGAGTAACCGGAGCAGAAGAACAGTTGTGG
CGGAGACGGAGCCTACATTCTTGCAGAGCTGCTCAACAAAATGGTCCAAG
GGGTTGCAGCGAGGCGCCAGATGGGACAAGGTATGTGTGTACAGAGACAT
ATCTCCCTCTGTACTGCTGTGGCGCCGTTGATCGCCCGCCGTGGCTTGGG
ATGTCTCCAATGGTAGTCCCGCCTTGCTCTCCTCCTGGTTGACCAAACCT
CGTAGTGTCCATACATTTATGGGAACCATCAACTGCGCTCTGTGCTCGTA
GTGCTCTCCATCCCGCAAATAGACCGGGCTTTTCTGACGGTAAAAATGAG
AACCTTGTTTTGCGGGTGGTTGCTCAACAGCGGCAACAGCGGATGACGAG
AGGAGACAATCCAGAAACACTTATCTCGTCCTACAAAATTCATGGACATG
AGCTACCGCCATGATCTCGTTGGGAATGTTTGAAGGGAAACTTCAGGAGT
TCTATATTTGTTTGCCCTCGAAACAGCAGCAGCTTCTCCGGGCTAAGCGG
CCTCCACGTGGGTGCACAATCTCGTCAACGTAGCTCTGGATGTACATAAG
AAACATTACGTGTAGATTCCCAGTGGCGTGTCCTTGGTGTACCACAGGCT
ACTGCCACCCCCGGTTCCTTGGAGGATGATTTTTGTGCTTCCGCTAATCT
GGGTTCAATGCGCTCACCAGGCATGCCCGGGTTGGTGGGCAAATGTTACT
TAGATATTTTTTGTATACAGTAGTACAGCAGTCGGGCGTTTACGTTTTAG
TCGGGTGTTTACCAGTAGATTACCCCGCTAGTCACCCGCGCCGATGGCAC
TGCTGTACATTTTTGCGGTTATCCCCGTGAAATCCCGGTCGCTAATTCTC
GGGAAGTGTGCCAAAGTCTGAGGTGTGGATGTATTATTGACCCTCTTTGA
CATTGCGGGTTTTCTCGTGCGCTTTGCGAAGTGCGACTACATAGATATGT
TCGAAGCCAAAACTTGAACGACTCCGTACTGCGTACGCACACACAAGTTT
GTTCTTCGGGCCCCGTTGTCCAATCTCCTCCCTCTTGCGACCCTCCTGTC
GGGAGACAAGTCTACGCAGGAAAAAGTGTGGAATCGTTTAAGTTGGGGGT
TAAGGGTTGGGATTATAGGGTGTGTGTGCCCCCTCCGTGGTCTATTTTCG
TGCGAATCTTGCTGTCTTTGCGTAGGCGTCCGTCGGGGGACTAGAAGGCC
GTGATGGCGTTTTTTATTTCGCCGTAAGAACACGGGTAGCCCCAGCGTTC
TGTTTTAGTTTCCCGTGGCAACCCACGTGTGTACCGTACCCTAACTCCCA
CCTGTGGGATTTCAACGCCTTCAACCTATCTACACGACGTAGACTGTGCC
CCCACCTGGTACTGATCTGTCCGAGAAGACACCGCGACATCCATGGGCTC
TAGTATCCAAGTGTTTTTGCGGCGGCAGTGATGTCCCACCCTTGCGCTAA
CCACTGTCCCTCTCGCTGCTGAGTCCATCAGTGCGTTGCCGGCATCCACT
TGGTTTTCGTACATTCAGATCACGGGGCGAGCGCGGAGCTAAGCCTGAGT
GCCGTGTACTAGCTAGATCTCTCCAGCCCACGCGAGTGGCTGTTACACCG
TTTTTTTTCCCTCTTAACCACGATAGTGCCGTCGGGTAGAATCTGCGAGG
ACCCGCATAATTACCCACACATTTAGAAGGTTTCTCGCAGCAGTCGGGTC
TGGTCACATCGTTTACTTTACCCAGGTATGGTCAAGGAGCAAAATAATAA
AATATCAAGAGTGCAACAAAAAATTATGGTTATGTTTTTTGGTGTTTATC
AACGAGGGTAGGCGAACCAGAACCAGTCTCATCGCATATGTCGCGCCAAA
CTGCAAGTCGACCAACATCATTTATTCTTTTTCGCCGTAGTGGTTCGGAG
AATGCCATGTTGTTGAGGTGGTGCCACTCTTGTTGTGCTAGTGCTGCACT
TGGTTCATGTTTGTTTCCTCCGAAGTGGTTTCTGTTGACCGCTCGCTCAT
GAGGTTTCTAGGCAGTTCACAGCGCTCCTGCTGCTGCTGCTGTTGCTGCT
TCTGCTGCCTTTGCTGCTGCCGTCGCCATTCCGGTTTTTTATGTTGTTCG
CAGGACACATTCGAAGACTTTCCCATATGCGTCCACTGGTTCAGACAATT
CATGGCGGCGGTGGCGGGGATATGTGTGGGTTTCGCGGGAGTCACTGGAT
GGTTCGGGCTCGTGGGGTGAGCAAGTTGTGAGCGCGTTAGCTTCGTCACT
GAGCGGCACGTGATTGCCCGATTCTTGTTCCTGGACCTTTGTTAGACATA
TATGGCTCGTGTGTTGTCTACTCTGTGCACATGAATCGTAAGGGATAGCG
CGGACTGTGCCTCACGACTTCCCTCCTTACCTCCAGAAATTCACTGTTGA
GTAGATGAATGACCAACGTTCGGCACCAAACACACCAAGAACGCCATACT
TGTCTTTCCTCGGTGCCCTCCCTCCCCCGGCCGGGGACCAAAGCAATCAT
TGAGGCGAAATGTCCCCGCAGTGGAAAGAGAAGAGCCAAATGGCGGATGA
CCATTGGATGGTAGAGACCTTTTTCTTTTTGTTTCTTTTTCGCCGGCGTC
CACAAGGCTCTCGTACAGGCAAGTACAGCCAAAGTGCGTTCCCGTGGCGG
GTGCATGCGCCATGTCGCCTACACAAGAGGGTGGTGGATGACAAATGATT
CATTTAAGTCACCCCTACTTTTCTGTGGGGTTCGATGCACACCCCGACCA
GTAAGTTTCTGGCCTATCCAGAGCTTCGGTTTCGCAATGACGAGTTTCGC
TGGCCCCTTTCCCCGCTGAGACACTGCCAGAGCGGGGTTTATTGAATGAA
TGGTAATGACGTAGATATTTGTTACCATATGTGTGTGCATGCACCGAAAC
GCAAGAGTCACGAGTCACCGTCCGCCCGAACAAACACTGCGATTATCTCC
CCACACTATTTGGATCCGTCCAAGTTTCGGACTTCCAGTGGCATGTTGTG
GCGACACGAGTTGTCCGCCCCCTCCTGCGGTTTGACTTTTCTGAGGATTT
ACGCCGCCGTCTGTGTGCTTGTCTTCTTGGCGTGTACGAAGGGGATTCGC
CTTCGTCACTGGGGCCACTTACTTGTACTACGCAAGATTCGTCGAGGCGG
ACGAGTTGTCATACGGTGATCAGGGCCTGAAATGGGAGGGATTGCTGCCA
TCTCTCACGGTCTTCCTCCTGATGTGGATCTTGTCGTTCAACGGCATGGG
GCACGTCTTGTTGAATATCGCGTAGGTAGGCCGGGGGGAGTTGGTAGAAA
AGTGCTTGCACTTCCTCGGGACTTGGGTTGCCGGAGACCGCGCGTGACAC
CCACATGTTGCTGGGGGAAAACCTCTGGAGGGGGAGGAAATCTGAAGCGC
GAGGAAGTTGGGGGGCGATTGGACCGACGAACGCGAGCAACGAAATGAGT
GTTTAAGACGGGAAGCTCCTTTCTAAGGCGTTCGTTGTTGTGCTGAGAGC
TTCGAGTGTAGGCTTGAAACTCGGCACACTCTTGAGCCAGTGCGACTCGC
TCACTGGGGTGATGGGCGGCGAGAGCCAGCTTCGAGCGGCATGCCTTTTT
GGTTCCACATATGAAGGAGATTATATGTAGAAATGAAAGCCTGTGTAGAG
TGGTCTTGGTGGTTGCAGGAGGGTGCGCTTGTTTGTTGACCAAGCATGTC
ACTCTAGGCAAATCTCAGTTTCTACTCTTGAACGAGATATACTGGAGAGA
CTGACTTTCACGTGCATGCTACGCTTCCATCCCGTGCCTTGGGCGATGTG
CTAGGTCGGGCACCTCTGTCGGTTGGTGCTGTTGCGATCTTGTGTCATGA
GAATGAGTATGAGAGTGATATCGCGCTAACGATGGGCTGAAGGAGTTTGT
TGAAGAGTATAGTCATGGCGACCTGTCGATTTTGTTTTGTGCTTCAAAGA
GGCGCGACCTTCGTGTGTCAAGCTTTTTTTGTGTTCGGTCTGCTTTATGG
TTCGTCTGGATTTTGGGTCAGGTTCCTGTTCGGGAGAAGCCTTCGTTATT
TATTTGAATGGACAGGGGCACATTCCGCGCGCACCGTGTAATAATCTTAG
GCACTTCAGCACTATTATACGACAAAGTTTGTGACCATCTCTTTCACCGA
AATGTTTTGTTGCGTAGTGGCTACATAGTTCGGCCGCTAGCCGCCGATGA
CGTTTCGCCTGGCCGTCGAAAAGTGATCTGTTTGTTTTAAGGTTTCTCGA
CCCTACGGGGCACCCTATTACAATTCGTGAGCCACTCACTCCGCAGAATT
ATGGCCGTATCAAAACTTGCTTTTCCCGCCTCTATCAAAGTCGTCATCGC
CGAAAAACGTTCAAACCGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10209:90..4559+

>mRNA_Ecto-sp8_S_contig10209.342.1 ID=mRNA_Ecto-sp8_S_contig10209.342.1|Name=mRNA_Ecto-sp8_S_contig10209.342.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10209:90..4559+ (Ectocarpus species8 EcLAC_412)
ATGAGTAACCGGAGCAGAAGAACAGTTGTGGCGGAGACGGAGCCTACATT
CTTGCAGAGCTGCTCAACAAAATGGTCCAAGGGGTTGCAGCGAGGCGCCA
GATGGGACAAGGACACATTCGAAGACTTTCCCATATGCGTCCACTGGTTC
AGACAATTCATGGCGGCGGTGGCGGGGATATGTGTGGGTTTCGCGGGAGT
CACTGGATGGTTCGGGCTCGTGGGGGGATTCGCCTTCGTCACTGGGGCCA
CTTACTTGTACTACGCAAGATTCGTCGAGGCGGACGAGTTGTCATACGGT
GATCAGGGCCTGAAATGGGAGGGATTGCTGCCATCTCTCACGGTCTTCCT
CCTGATGTGGATCTTGTCGTTCAACGGCATGGGGCACGTCTTGTTGAATA
TCGCGTAG
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