prot_Ecto-sp8_S_contig101849.304.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig101849.304.1
Unique Nameprot_Ecto-sp8_S_contig101849.304.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length116
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: D7FPV1_ECTSI (Similar to U3 small nucleolar RNA interacting protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV1_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.390e-75
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 
Query:    1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 116
            VAKGLQGQQISPT VRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF
Sbjct:  152 VAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 267
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A835Z4V0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.950e-33
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 0 
Query:    1 VAKGLQGQQISPTT-VRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSV--------KAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 116
            +A  L+G  +S  T +R + GH+L+ TCV LS DD TAFSGSKDN+++RWDVETG R  +   W+K P  +  +         + H  EVL +A S DGRY+A+GGRD+L+ VWDCRTD VV +F
Sbjct:  107 LAAALRGADLSDATRIRALSGHRLAVTCVALSGDDATAFSGSKDNAVLRWDVETGARKVLCARWKKRPAAERAAXXXXXXXXEQEHCAEVLAIAASTDGRYVAAGGRDKLVRVWDCRTDEVVASF 231
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A2R5GMT0_9STRA (U3 small nucleolar RNA-interacting protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMT0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.770e-26
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 0 
Query:   19 RGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVET 115
            R H+LS TC+ L+  +  A++GSKD SI+RWDVETGKRVT  P           S+K H  EVL +AVS DGRYLASGG+D++I++WD R++T+V++
Sbjct:  146 RTHRLSVTCIALTGAEDVAYTGSKDCSIVRWDVETGKRVTRFPGRPATKQIAASSIKGHHDEVLAVAVSTDGRYLASGGKDKVIHIWDARSNTLVDS 242
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A7S2S842_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S842_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.050e-25
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 0 
Query:   19 RGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 116
            R H+L+ TC+ LS  +  AF+GSKD SI+RWDVETGK++   P            +K H  EVL++++S DGRYLASGGRD+++ +WD RTD+ ++ F
Sbjct:  136 RAHRLAVTCLALSESEDFAFTGSKDCSIVRWDVETGKKLAKYPGQPATKSISADKIKGHHDEVLSMSLSSDGRYLASGGRDKVVRIWDVRTDSEIDAF 233
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A7L3YTH1_FREGA (U3IP2 protein (Fragment) n=1 Tax=Fregetta grallaria TaxID=79628 RepID=A0A7L3YTH1_FREGA)

HSP 1 Score: 105 bits (261), Expect = 3.070e-25
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 0 
Query:    5 LQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRT 109
            LQ Q   P +++ +RGH+L  TC+V+SPDD   FS SKD S+I+W+VE+GKR+ M+P  +K   G       H+  VL +A+S DG+YLA+G R++LI +WD  T
Sbjct:   12 LQVQPPDPASIQVLRGHQLPVTCLVISPDDRFIFSASKDGSLIKWEVESGKRLCMVPGGKK---GTEERHMGHASHVLCMAISSDGKYLATGDRNKLIMIWDAAT 113
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: UPI00051BF81E (U3 small nucleolar RNA-interacting protein 2-like n=1 Tax=Fulmarus glacialis TaxID=30455 RepID=UPI00051BF81E)

HSP 1 Score: 102 bits (255), Expect = 4.450e-25
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 0 
Query:    1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRT 109
            V   LQ Q   P ++R +RGH+L  TC+V+SPDD   FS SKD  +I+W+VE+GKR+ ++P  +K   G       H+  VL +A+S DG+YLA+G R++LI +WD  T
Sbjct:    2 VPLSLQVQPPDPASIRVLRGHQLPVTCLVISPDDRFIFSDSKDGYLIKWEVESGKRLCVVPGGKK---GTEERHMGHASHVLCMAISSDGKYLATGDRNKLIMIWDAAT 107
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A8C4XE79_ERPCA (Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4XE79_ERPCA)

HSP 1 Score: 106 bits (265), Expect = 1.010e-24
Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:    1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 116
            VAK  Q   ++   VR ++GHKL  TCVV+SPDD   FS SKD SII+WDVETGK+V  +P  RK   G       H+  VL +AVS DG+YLA+G R++L+ +WD  T   + TF
Sbjct:  127 VAKDFQPPDVAD--VRLLKGHKLPVTCVVISPDDKHIFSSSKDCSIIKWDVETGKKVCTVPGGRK---GTEDRHVGHTAHVLCMAVSSDGKYLATGDRNKLVMIWDAATCRHLYTF 237
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: G1LRQ6_AILME (Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein n=3 Tax=Caniformia TaxID=379584 RepID=G1LRQ6_AILME)

HSP 1 Score: 106 bits (264), Expect = 1.410e-24
Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 0 
Query:    1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 116
            VAK +Q    +P  +R +RGH+LS TCVV++PDD+  FS +KD +II+W VE+G+++ ++P  +K   G+ PS   HS  +L +A+S DG+YLASG R +LI +W+ ++   + TF
Sbjct:  127 VAKEIQAP--APADIRVLRGHQLSITCVVITPDDSAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPS---HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTF 237
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: W7U1Y2_9STRA (U3 small nucleolar rna-interacting protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1Y2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.470e-24
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 0 
Query:   18 MRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRV-TMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCR 108
            ++GHKL+PTCV ++ D+ TAF+G KDN+I+R+D+E+G+R  T+   WR   GG+    ++H KEVL LAVS DGRYLA+GGRD+ I +WD R
Sbjct:  165 LKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWR---GGQ--GYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLR 251
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BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A480LVA3_PIG (U3 small nucleolar RNA-interacting protein 2 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A480LVA3_PIG)

HSP 1 Score: 102 bits (255), Expect = 1.630e-24
Identity = 49/116 (42.24%), Postives = 78/116 (67.24%), Query Frame = 0 
Query:    1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 116
            VAK +Q    +P  +R +RGH+LS TC+V++PDD   FS +KD +II+W VE+G+++ ++P  +K   G+ P    HS  +L +A+S DG+YLASG R +LI +W+ ++   + TF
Sbjct:  127 VAKEIQAP--APADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPG---HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTF 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV1_ECTSI1.390e-7599.14Similar to U3 small nucleolar RNA interacting prot... [more]
A0A835Z4V0_9STRA2.950e-3349.60WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A2R5GMT0_9STRA4.770e-2652.58U3 small nucleolar RNA-interacting protein 2 n=1 T... [more]
A0A7S2S842_9STRA1.050e-2547.96Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A7L3YTH1_FREGA3.070e-2546.67U3IP2 protein (Fragment) n=1 Tax=Fregetta grallari... [more]
UPI00051BF81E4.450e-2544.95U3 small nucleolar RNA-interacting protein 2-like ... [more]
A0A8C4XE79_ERPCA1.010e-2449.14Ribosomal RNA processing 9, U3 small nucleolar RNA... [more]
G1LRQ6_AILME1.410e-2443.97Ribosomal RNA processing 9, U3 small nucleolar RNA... [more]
W7U1Y2_9STRA1.470e-2454.35U3 small nucleolar rna-interacting protein 2 n=2 T... [more]
A0A480LVA3_PIG1.630e-2442.24U3 small nucleolar RNA-interacting protein 2 n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 11..50
e-value: 6.0E-5
score: 32.5
coord: 67..106
e-value: 2.0E-7
score: 40.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 73..106
e-value: 2.2E-6
score: 28.3
coord: 14..50
e-value: 3.3E-4
score: 21.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 74..115
score: 15.087
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 18..59
score: 12.547
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 11..116
e-value: 8.1E-30
score: 105.6
IPR039241Ribosomal RNA-processing protein Rrp9-likePANTHERPTHR19865U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2coord: 13..116
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 93..107
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 18..116
score: 19.512
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 13..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101849contigEcto-sp8_S_contig101849:3..534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101849.304.1mRNA_Ecto-sp8_S_contig101849.304.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig101849 3..534 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig101849.304.1 ID=prot_Ecto-sp8_S_contig101849.304.1|Name=mRNA_Ecto-sp8_S_contig101849.304.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWD
VETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDR
LINVWDCRTDTVVETF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR039241Rrp9-like
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam