mRNA_Ecto-sp8_S_contig101849.304.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: D7FPV1_ECTSI (Similar to U3 small nucleolar RNA interacting protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV1_ECTSI) HSP 1 Score: 241 bits (615), Expect = 1.390e-75 Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 1
Query: 1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 348
VAKGLQGQQISPT VRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF
Sbjct: 152 VAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 267
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A835Z4V0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V0_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.950e-33 Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query: 1 VAKGLQGQQISPTT-VRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSV--------KAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 348
+A L+G +S T +R + GH+L+ TCV LS DD TAFSGSKDN+++RWDVETG R + W+K P + + + H EVL +A S DGRY+A+GGRD+L+ VWDCRTD VV +F
Sbjct: 107 LAAALRGADLSDATRIRALSGHRLAVTCVALSGDDATAFSGSKDNAVLRWDVETGARKVLCARWKKRPAAERAAXXXXXXXXEQEHCAEVLAIAASTDGRYVAAGGRDKLVRVWDCRTDEVVASF 231
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A2R5GMT0_9STRA (U3 small nucleolar RNA-interacting protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMT0_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.770e-26 Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1
Query: 55 RGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVET 345
R H+LS TC+ L+ + A++GSKD SI+RWDVETGKRVT P S+K H EVL +AVS DGRYLASGG+D++I++WD R++T+V++
Sbjct: 146 RTHRLSVTCIALTGAEDVAYTGSKDCSIVRWDVETGKRVTRFPGRPATKQIAASSIKGHHDEVLAVAVSTDGRYLASGGKDKVIHIWDARSNTLVDS 242
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A7S2S842_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S842_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.050e-25 Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 55 RGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 348
R H+L+ TC+ LS + AF+GSKD SI+RWDVETGK++ P +K H EVL++++S DGRYLASGGRD+++ +WD RTD+ ++ F
Sbjct: 136 RAHRLAVTCLALSESEDFAFTGSKDCSIVRWDVETGKKLAKYPGQPATKSISADKIKGHHDEVLSMSLSSDGRYLASGGRDKVVRIWDVRTDSEIDAF 233
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A7L3YTH1_FREGA (U3IP2 protein (Fragment) n=1 Tax=Fregetta grallaria TaxID=79628 RepID=A0A7L3YTH1_FREGA) HSP 1 Score: 105 bits (261), Expect = 3.070e-25 Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 13 LQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRT 327
LQ Q P +++ +RGH+L TC+V+SPDD FS SKD S+I+W+VE+GKR+ M+P +K G H+ VL +A+S DG+YLA+G R++LI +WD T
Sbjct: 12 LQVQPPDPASIQVLRGHQLPVTCLVISPDDRFIFSASKDGSLIKWEVESGKRLCMVPGGKK---GTEERHMGHASHVLCMAISSDGKYLATGDRNKLIMIWDAAT 113
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: UPI00051BF81E (U3 small nucleolar RNA-interacting protein 2-like n=1 Tax=Fulmarus glacialis TaxID=30455 RepID=UPI00051BF81E) HSP 1 Score: 102 bits (255), Expect = 4.450e-25 Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRT 327
V LQ Q P ++R +RGH+L TC+V+SPDD FS SKD +I+W+VE+GKR+ ++P +K G H+ VL +A+S DG+YLA+G R++LI +WD T
Sbjct: 2 VPLSLQVQPPDPASIRVLRGHQLPVTCLVISPDDRFIFSDSKDGYLIKWEVESGKRLCVVPGGKK---GTEERHMGHASHVLCMAISSDGKYLATGDRNKLIMIWDAAT 107
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A8C4XE79_ERPCA (Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4XE79_ERPCA) HSP 1 Score: 106 bits (265), Expect = 1.010e-24 Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 348
VAK Q ++ VR ++GHKL TCVV+SPDD FS SKD SII+WDVETGK+V +P RK G H+ VL +AVS DG+YLA+G R++L+ +WD T + TF
Sbjct: 127 VAKDFQPPDVAD--VRLLKGHKLPVTCVVISPDDKHIFSSSKDCSIIKWDVETGKKVCTVPGGRK---GTEDRHVGHTAHVLCMAVSSDGKYLATGDRNKLVMIWDAATCRHLYTF 237
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: G1LRQ6_AILME (Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein n=3 Tax=Caniformia TaxID=379584 RepID=G1LRQ6_AILME) HSP 1 Score: 106 bits (264), Expect = 1.410e-24 Identity = 51/116 (43.97%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 348
VAK +Q +P +R +RGH+LS TCVV++PDD+ FS +KD +II+W VE+G+++ ++P +K G+ PS HS +L +A+S DG+YLASG R +LI +W+ ++ + TF
Sbjct: 127 VAKEIQAP--APADIRVLRGHQLSITCVVITPDDSAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPS---HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTF 237
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: W7U1Y2_9STRA (U3 small nucleolar rna-interacting protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1Y2_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.470e-24 Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 1
Query: 52 MRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRV-TMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCR 324
++GHKL+PTCV ++ D+ TAF+G KDN+I+R+D+E+G+R T+ WR GG+ ++H KEVL LAVS DGRYLA+GGRD+ I +WD R
Sbjct: 165 LKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWR---GGQ--GYQSHEKEVLALAVSSDGRYLAAGGRDKEIRIWDLR 251
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Match: A0A480LVA3_PIG (U3 small nucleolar RNA-interacting protein 2 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A480LVA3_PIG) HSP 1 Score: 102 bits (255), Expect = 1.630e-24 Identity = 49/116 (42.24%), Postives = 78/116 (67.24%), Query Frame = 1
Query: 1 VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETF 348
VAK +Q +P +R +RGH+LS TC+V++PDD FS +KD +II+W VE+G+++ ++P +K G+ P HS +L +A+S DG+YLASG R +LI +W+ ++ + TF
Sbjct: 127 VAKEIQAP--APADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPG---HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTF 237 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101849.304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig101849.304.1 >prot_Ecto-sp8_S_contig101849.304.1 ID=prot_Ecto-sp8_S_contig101849.304.1|Name=mRNA_Ecto-sp8_S_contig101849.304.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp VAKGLQGQQISPTTVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDback to top mRNA from alignment at Ecto-sp8_S_contig101849:3..534+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig101849.304.1 ID=mRNA_Ecto-sp8_S_contig101849.304.1|Name=mRNA_Ecto-sp8_S_contig101849.304.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=532bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101849:3..534+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101849:3..534+ >mRNA_Ecto-sp8_S_contig101849.304.1 ID=mRNA_Ecto-sp8_S_contig101849.304.1|Name=mRNA_Ecto-sp8_S_contig101849.304.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101849:3..534+ (Ectocarpus species8 EcLAC_412)back to top |