mRNA_Ecto-sp8_S_contig9696.31407.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9696.31407.1
Unique NamemRNA_Ecto-sp8_S_contig9696.31407.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 2.330e-38
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 MRGRDEGPGREEPDIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK 210
            MRGRDEGP REEPDIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK
Sbjct:    9 MRGRDEGPPREEPDIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK 78
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BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: A0A4Z2IRY1_9TELE (Putative ATP-dependent RNA helicase DDX11-like protein 8 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2IRY1_9TELE)

HSP 1 Score: 88.2 bits (217), Expect = 7.930e-21
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   43 IPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK 210
             PFP++PYD+Q+Q M+ +Y TLE G +GIFESPTGTGKSLS+IC AL WL D E K
Sbjct:   16 FPFPYQPYDIQEQFMQALYKTLEQGKVGIFESPTGTGKSLSLICGALSWLTDHEEK 71
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BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: Q0VFS5_XENTR (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=Q0VFS5_XENTR)

HSP 1 Score: 86.7 bits (213), Expect = 1.940e-20
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   43 IPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK 210
             PFP+EPY +Q+Q M K+Y  LE G +GIFESPTGTGKSLS+IC AL WL+D E K
Sbjct:   13 FPFPYEPYPIQEQFMEKLYQALEAGKVGIFESPTGTGKSLSLICGALTWLQDFETK 68
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BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: A0A835YWY4_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.930e-20
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   37 PDIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK 210
            P IPFPF PY+VQ+QLM  +Y+  E GGIGIFESPTGTGKSLS+IC+ALQWL  ++A+
Sbjct:   17 PSIPFPFPPYEVQQQLMTHLYTAFERGGIGIFESPTGTGKSLSIICAALQWLTVSDAR 74
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BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: UPI000C6E49F0 (ATP-dependent DNA helicase DDX11-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E49F0)

HSP 1 Score: 91.3 bits (225), Expect = 7.440e-20
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   19 GPGREEPDIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK 210
            GP +     PFPF PYDVQ + M K+Y+TLE+G IGIFESPTGTGKSLS+IC A+ WLK+ E K
Sbjct:    3 GPAKSTSKFPFPFTPYDVQLEFMSKLYNTLEDGKIGIFESPTGTGKSLSLICGAVTWLKEHEKK 66
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BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: A0A8K0A2R1_BRALA (DDX11 protein n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A8K0A2R1_BRALA)

HSP 1 Score: 91.3 bits (225), Expect = 7.450e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   40 DIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAE 204
            + PFPFEPYD+QK  M K+Y TLE G +GIFESPTGTGKSLS+IC AL+WL+D E
Sbjct:    6 EFPFPFEPYDIQKGFMTKLYQTLEEGKVGIFESPTGTGKSLSLICGALKWLQDHE 60
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BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: A0A6P4ZTM8_BRABE (ATP-dependent DNA helicase DDX11-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZTM8_BRABE)

HSP 1 Score: 91.3 bits (225), Expect = 7.450e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   40 DIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAE 204
            + PFPFEPYD+QK  M K+Y TLE G +GIFESPTGTGKSLS+IC AL+WL+D E
Sbjct:    6 EFPFPFEPYDIQKGFMTKLYQTLEEGKVGIFESPTGTGKSLSLICGALKWLQDHE 60
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: UPI0013902411 (ATP-dependent DNA helicase DDX11 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013902411)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-19
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   43 IPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK 210
             PFPF PYD+Q++ M ++Y  LE GG+GIFESPTGTGKSLS+IC AL WL+D EAK
Sbjct:   24 FPFPFPPYDIQEEFMAELYKVLEKGGVGIFESPTGTGKSLSLICGALTWLRDHEAK 79
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: A0A8J9YC34_9NEOP ((lesser marbled fritillary) hypothetical protein n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9YC34_9NEOP)

HSP 1 Score: 90.5 bits (223), Expect = 1.390e-19
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   34 EPDIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAEAK 210
            +P   FPFEPYD+QK+ M+++Y T+EN  IGIFESPTGTGKSLS+ C ALQWLKD   K
Sbjct:    2 QPSFSFPFEPYDIQKKFMKELYFTIENKKIGIFESPTGTGKSLSICCGALQWLKDNNQK 60
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Match: A0A1A8Q8L7_9TELE (DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 (Fragment) n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8Q8L7_9TELE)

HSP 1 Score: 87.8 bits (216), Expect = 1.550e-19
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   40 DIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGTGKSLSVICSALQWLKDAE 204
            + PFP++PYD+Q+Q M+ +YSTL+ G +GIFESPTGTGKSLS+IC AL WL D E
Sbjct:    7 EFPFPYQPYDIQEQFMQALYSTLDQGKVGIFESPTGTGKSLSLICGALSWLTDHE 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9696.31407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI2.330e-3898.57Helicase ATP-binding domain-containing protein n=1... [more]
A0A4Z2IRY1_9TELE7.930e-2166.07Putative ATP-dependent RNA helicase DDX11-like pro... [more]
Q0VFS5_XENTR1.940e-2066.07Helicase ATP-binding domain-containing protein (Fr... [more]
A0A835YWY4_9STRA2.930e-2068.97Helicase C-terminal domain-containing protein n=1 ... [more]
UPI000C6E49F07.440e-2064.06ATP-dependent DNA helicase DDX11-like n=1 Tax=Cent... [more]
A0A8K0A2R1_BRALA7.450e-2070.91DDX11 protein n=3 Tax=Branchiostoma TaxID=7737 Rep... [more]
A0A6P4ZTM8_BRABE7.450e-2070.91ATP-dependent DNA helicase DDX11-like n=1 Tax=Bran... [more]
UPI00139024111.020e-1967.86ATP-dependent DNA helicase DDX11 n=1 Tax=Nematoste... [more]
A0A8J9YC34_9NEOP1.390e-1966.10(lesser marbled fritillary) hypothetical protein n... [more]
A0A1A8Q8L7_9TELE1.550e-1965.45DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9696contigEcto-sp8_S_contig9696:753..1500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score144.4
Seed ortholog evalue2e-32
Seed eggNOG ortholog2880.D8LPY7
Preferred nameCHL1
Model size210
KEGG koko:K11273
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
Exons2
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1133@2759
EC3.6.4.13
Cds size210
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145334.3641236-CDS-Ecto-sp8_S_contig9696:752..8121681145334.3641236-CDS-Ecto-sp8_S_contig9696:752..812Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9696 753..812 -
1681145334.3804405-CDS-Ecto-sp8_S_contig9696:1350..15001681145334.3804405-CDS-Ecto-sp8_S_contig9696:1350..1500Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9696 1351..1500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9696.31407.1prot_Ecto-sp8_S_contig9696.31407.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9696 753..1500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9696.31407.1

>prot_Ecto-sp8_S_contig9696.31407.1 ID=prot_Ecto-sp8_S_contig9696.31407.1|Name=mRNA_Ecto-sp8_S_contig9696.31407.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=70bp
MRGRDEGPGREEPDIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGT
GKSLSVICSALQWLKDAEAK
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mRNA from alignment at Ecto-sp8_S_contig9696:753..1500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9696.31407.1 ID=mRNA_Ecto-sp8_S_contig9696.31407.1|Name=mRNA_Ecto-sp8_S_contig9696.31407.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=748bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9696:753..1500- (Ectocarpus species8 EcLAC_412)
ATGCGTGGCCGTGATGAAGGGCCTGGTAGGGAAGAACCTGACATCCCGTT
CCCTTTCGAGCCCTACGACGTCCAGAAACAGCTGATGCGCAAAATCTACT
CCACCCTCGAGAACGGAGGCATCGGTATCTTCGAGAGTCCTACAGGAACG
GTGAGCGTGGGGCTACACTCTGCTGCTGTACTGTAGTTGCAACGAGAGCA
ACGCCCGCTAGATGTGGACTGATCAGCGCCTTCAATCCGTCATAGGTAGT
CCCGATCTGTAGTATCAGCAGTTGGTTCCCCCTGGCCCTAAGGCGCCCGA
AGCCGTAGGTTGCATAAGATACCACACCCCCTGGACCGAATTTCAAACTT
GTCACACCCACGACAAGCAGGAGGCCGACATCAAATGATACATTTTCGGA
AAGCTCTCGACAAGACGGTCAGTTCCAACGCCGCCATTTTCGGCACCGTC
GCCTCTGTTTCTCCTGCCGAGTAATCGAGCCTTGAAAATGAGTCCGGCGG
GTAATATCTTACATGCAAACCTACGGTAGTGCGTGGTGCCCACTCGACTG
TTGCTGTCTTCGTCGCAGGGCCAAACAAAATTCTCTGAGCCTCGTACTCA
GTGCGCACTAGTGCTATGTTTGTTGGTGCAGGGCAAGTCTCTGAATCTCT
GTACTCTGTGCACACTGGTGTTGTCTTTGCTGTCGCAGGGCAAGTCTCTG
AGCGTGATCTGCAGCGCCCTCCAGTGGCTCAAGGACGCCGAGGCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9696:753..1500-

>mRNA_Ecto-sp8_S_contig9696.31407.1 ID=mRNA_Ecto-sp8_S_contig9696.31407.1|Name=mRNA_Ecto-sp8_S_contig9696.31407.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9696:753..1500- (Ectocarpus species8 EcLAC_412)
ATGCGTGGCCGTGATGAAGGGCCTGGTAGGGAAGAACCTGACATCCCGTT
CCCTTTCGAGCCCTACGACGTCCAGAAACAGCTGATGCGCAAAATCTACT
CCACCCTCGAGAACGGAGGCATCGGTATCTTCGAGAGTCCTACAGGAACG
GGCAAGTCTCTGAGCGTGATCTGCAGCGCCCTCCAGTGGCTCAAGGACGC
CGAGGCCAAG
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