mRNA_Ecto-sp8_S_contig11028.1402.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11028.1402.1
Unique NamemRNA_Ecto-sp8_S_contig11028.1402.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11028.1402.1 vs. uniprot
Match: A0A2Z3GZA6_9BACT (Uncharacterized protein n=1 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3GZA6_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 6.010e-7
Identity = 60/196 (30.61%), Postives = 76/196 (38.78%), Query Frame = 1 
Query:  148 PVVLCAAHGGNAVDGDQSETLLQRPVVNPLPRGSVDVPGKARLAGVNLVADVGTSQLLEEIDRRLTHKCSSCGNGGFATAVRSPAAVVARFHRKYVDANRPLED--EDAMAVHPSCTRARGVHQSYHRAIETAIGALESRCCWTQAARPSGRNREERDEEERGKETPRVLLLDVHGQCKSVDNVLIGTCNGKTADL 729
            PV+L A HGG              P V+P     + V G    AG     D GT +L       +  K             + P  VVA+FHRK++DANRP E   EDA A  P+    RG   SY R ++   G                                R LLLD+HGQ +  D V+ GT +GKT  L
Sbjct:   51 PVILSAPHGGTK----------DVPGVSPRKGDGLPVGGSGFFAG----RDGGTEELAHATAAAIAKKTG-----------KKPYLVVAQFHRKFIDANRPPEIAYEDAKAK-PTYDAYRGTLASYCREVKKRYG--------------------------------RGLLLDIHGQGRMKDTVIRGTKDGKTVAL 188
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BLAST of mRNA_Ecto-sp8_S_contig11028.1402.1 vs. uniprot
Match: UPI001A000F6D (Uncharacterized protein n=2 Tax=Alienimonas chondri TaxID=2681879 RepID=UPI001A000F6D)

HSP 1 Score: 62.8 bits (151), Expect = 6.310e-7
Identity = 67/224 (29.91%), Postives = 88/224 (39.29%), Query Frame = 1 
Query:  145 LPVVLCAAHGGNAVDGDQSETLLQRPVVNPLPRGSVDVPGKARLAGVNLVADVGTSQLLEEIDRRLTHKCSSCGNGGFATAVRSPAAVVARFHRKYVDANRPLEDEDAMAVHPSCTRARGVHQSYHRAIETAIGALESRCCWTQAARPSGRNREERDEEERGKETPRVLLLDVHGQCKSVDNVLIGTCNGKTADL-----EELNTPHKGFLWHLRRAFNPKEGG 801
            LP++L A HGG A                 L  G  +  G+A   GV    D G  + +   D R+        +G      + P+ VVARF RKY+DANRP     A   HP    A   +  YH+ ++  I             R  GR                 LLLD+HGQ    D+V  GT +G TA       EE+ +P K  + HLR A   K  G
Sbjct:  278 LPIILSAPHGGRA-----------------LVPGVPERTGEAFQPGVG--EDTGKYKFVTSRDTRVDQLALLVADGLEQRTGKRPSLVVARFSRKYIDANRP---RGAGVEHPLALPA---YDLYHQKLDDLI------------RRQQGRG----------------LLLDIHGQSAEKDSVFRGTRSGVTAGAPYQAGEEVESPGKRPI-HLRLADAMKSNG 447
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BLAST of mRNA_Ecto-sp8_S_contig11028.1402.1 vs. uniprot
Match: A0A5C6EKP9_9BACT (N-formylglutamate amidohydrolase n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EKP9_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-5
Identity = 61/216 (28.24%), Postives = 84/216 (38.89%), Query Frame = 1 
Query:   79 GSLHWDDHGVTSLVQSRTVSATLPVVLCAAHGGNAVDGDQSETLLQRPVVNPLPRGSVDVPGKARLAGVNLVADVGTSQLLEEIDRRLTHKCSSCGNGGFATAVRSPAAVVARFHRKYVDANR--PLEDEDAMAVHPSCTRARGVHQSYHRAIETAIGALESRCCWTQAARPSGRNREERDEEERGKETPRVLLLDVHGQCKSVDNVLIGTCNGKT 720
            GSL ++      L+Q  T    LP++L A HGG            ++P+    PR  V V         N + D+ T +L E +   +                + P  V+ARF+RKY DANR  PL  E           A+ V+Q+YH AI  A   +  R  W                        R +LLD+HGQ      +  GT NGKT
Sbjct:   27 GSLRFE-----KLIQQET--GELPIILSAPHGG------------RQPIPGVHPRQGVGVKA------FNSIPDLATDRLTETLADAIEKAMG-----------KRPYVVIARFNRKYADANRREPLAYESE--------NAKQVYQAYHAAIAEAKADVIER--WG-----------------------RGVLLDIHGQSTEPSAIFRGTANGKT 173
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BLAST of mRNA_Ecto-sp8_S_contig11028.1402.1 vs. uniprot
Match: A0A4P5YSZ9_9BACT (BPL_N domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5YSZ9_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 3.320e-5
Identity = 58/201 (28.86%), Postives = 84/201 (41.79%), Query Frame = 1 
Query:  124 SRTVSAT-LPVVLCAAHGGNAVDGDQSETLLQRPVVNPLPRGSVDVPGKARL-AGVNLVADVGTSQLLEEIDRRLTHKCSSCGNGGFATAVRSPAAVVARFHRKYVDANRPLEDEDAMAVHPSCTRARGVHQSYHRAIETAIGALESRCCWTQAARPSGRNREERDEEERGKETPRVLLLDVHGQCKSVDNVLIGTCNGKT 720
            + TV+A  LP++L A HGG A     +E            +G+    G AR  A ++   D+ T +L + +++RL  +               P  V+ARFHRKY+DANR  ED            A   +++YH AI  A   + +R  W                        R ++LD+HGQ      V  GT NGKT
Sbjct:   52 AMTVAAGGLPIILTAPHGGRAALPGVAER-----------QGA----GAARFNAKIDTNTDLLTEKLADALEQRLGKR---------------PYVVIARFHRKYLDANRRPEDAFESPA------ATATYEAYHAAIAAACQEVTAR--WG-----------------------RGVVLDIHGQASQPGVVFRGTQNGKT 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11028.1402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2Z3GZA6_9BACT6.010e-730.61Uncharacterized protein n=1 Tax=Gemmata obscuriglo... [more]
UPI001A000F6D6.310e-729.91Uncharacterized protein n=2 Tax=Alienimonas chondr... [more]
A0A5C6EKP9_9BACT1.400e-528.24N-formylglutamate amidohydrolase n=1 Tax=Rubripire... [more]
A0A4P5YSZ9_9BACT3.320e-528.86BPL_N domain-containing protein n=1 Tax=Verrucomic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11028contigEcto-sp8_S_contig11028:1803..3469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1300
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_005540.1
Cds size1299
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143188.9969704-CDS-Ecto-sp8_S_contig11028:1802..25091681143188.9969704-CDS-Ecto-sp8_S_contig11028:1802..2509Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11028 1803..2509 +
1681143189.004332-CDS-Ecto-sp8_S_contig11028:2877..34691681143189.004332-CDS-Ecto-sp8_S_contig11028:2877..3469Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11028 2878..3469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11028.1402.1prot_Ecto-sp8_S_contig11028.1402.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11028 1803..3469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11028.1402.1

>prot_Ecto-sp8_S_contig11028.1402.1 ID=prot_Ecto-sp8_S_contig11028.1402.1|Name=mRNA_Ecto-sp8_S_contig11028.1402.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=433bp
ARCELKQCDAHLLKPSTNTCRAAFYMGSLHWDDHGVTSLVQSRTVSATLP
VVLCAAHGGNAVDGDQSETLLQRPVVNPLPRGSVDVPGKARLAGVNLVAD
VGTSQLLEEIDRRLTHKCSSCGNGGFATAVRSPAAVVARFHRKYVDANRP
LEDEDAMAVHPSCTRARGVHQSYHRAIETAIGALESRCCWTQAARPSGRN
REERDEEERGKETPRVLLLDVHGQCKSVDNVLIGTCNGKTADLEELNTPH
KGFLWHLRRAFNPKEGGRDGDVGTAAATAVRYRGEREGGAGGRGEGEREE
DRQGREKEAANEEATTKHVGNGTKNEAVVVVLPIHGEKEVAGYTGGYTVQ
RHARSRAGEGAVVQGRPPQAAVEKGEEESRRGSNRGSLAVDAVQLEFGTS
FRRTPEARANAAEAVACAIFNHLQQGQTNWTS*
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mRNA from alignment at Ecto-sp8_S_contig11028:1803..3469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11028.1402.1 ID=mRNA_Ecto-sp8_S_contig11028.1402.1|Name=mRNA_Ecto-sp8_S_contig11028.1402.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1667bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11028:1803..3469+ (Ectocarpus species8 EcLAC_412)
GCCAGGTGCGAGCTGAAGCAGTGCGACGCTCACCTTTTAAAACCGAGCAC
GAACACATGCAGGGCAGCGTTCTACATGGGCTCGTTGCACTGGGACGATC
ACGGAGTTACCAGCCTCGTGCAGTCCCGCACCGTTAGCGCAACGCTGCCT
GTGGTACTCTGCGCTGCTCACGGCGGGAACGCCGTAGACGGGGACCAGTC
CGAGACGCTTCTGCAAAGGCCTGTGGTGAATCCTTTGCCACGAGGAAGTG
TTGACGTCCCCGGCAAAGCCAGATTGGCAGGGGTAAACCTTGTCGCCGAC
GTAGGGACCTCTCAGCTGCTGGAAGAAATCGATCGACGATTGACGCACAA
GTGCAGCAGCTGCGGCAATGGCGGCTTTGCAACGGCAGTGAGATCGCCAG
CGGCGGTGGTTGCCCGGTTCCACCGCAAGTATGTAGACGCCAATAGGCCG
CTCGAAGACGAAGATGCCATGGCGGTGCATCCTTCCTGCACAAGAGCGCG
GGGGGTGCACCAGAGCTACCACCGAGCTATTGAGACCGCCATCGGTGCTT
TGGAGTCCCGCTGCTGCTGGACACAGGCCGCACGGCCGAGTGGCAGAAAC
CGAGAAGAACGGGACGAGGAAGAACGTGGGAAAGAGACACCCCGAGTACT
ACTGCTAGACGTACACGGCCAGTGCAAGTCGGTCGACAACGTGCTCATAG
GAACTTGGTAAGCCGAAGGGACTTGTATTTTGTATCGGCTTGATTTGAGC
GTTGAGTTCTAGCGGGAAGACAGCCAGCCTTATATGCTGTAGATATCGCT
CCTCTACGTGATTCTGTTCCATGTCTAAAAAAAAAAAAAAAAATCTATTG
TACTGTACATACATACATTTTATCCTTTCTTCTTGGTTCGACTGATTTCT
TGGGTTTTCGTAGAAGAGCAGCCTACAGTACCAGGAGATGACATTGTCGG
TACGGGGGCGGGAAGCGGCAATTGGTGGTGATGTGGAAACCCACACAACT
CTGCAAAACATTTTGTCCCCCGCCCCCGAATGGCGAACCCCCCACGAACA
AACCCGGCCAATGCAACAACGACAGCAACGGCAAGACAGCCGACCTGGAG
GAACTCAATACGCCCCATAAAGGCTTTCTGTGGCACCTGAGGCGGGCCTT
CAACCCGAAAGAGGGAGGAAGAGACGGAGACGTCGGCACGGCAGCGGCAA
CGGCCGTCAGATACCGCGGAGAACGAGAAGGAGGGGCAGGCGGAAGAGGA
GAGGGAGAACGAGAAGAAGACCGACAAGGGCGGGAGAAGGAGGCTGCGAA
CGAGGAAGCGACTACGAAGCATGTCGGAAACGGCACGAAAAATGAGGCAG
TGGTGGTGGTGTTGCCGATCCACGGGGAGAAGGAAGTCGCCGGGTACACC
GGCGGTTATACCGTGCAAAGACATGCGAGGAGTCGTGCAGGAGAAGGCGC
GGTAGTGCAAGGAAGACCACCACAAGCAGCAGTAGAAAAAGGAGAAGAAG
AGAGCAGGAGAGGAAGCAATCGGGGATCGCTTGCCGTAGATGCCGTCCAG
CTAGAATTCGGCACGAGCTTCCGGCGCACCCCCGAGGCTCGGGCCAACGC
GGCCGAGGCGGTTGCCTGCGCGATTTTCAACCACCTTCAGCAGGGACAAA
CAAACTGGACATCATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11028:1803..3469+

>mRNA_Ecto-sp8_S_contig11028.1402.1 ID=mRNA_Ecto-sp8_S_contig11028.1402.1|Name=mRNA_Ecto-sp8_S_contig11028.1402.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1299bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11028:1803..3469+ (Ectocarpus species8 EcLAC_412)
GCCAGGTGCGAGCTGAAGCAGTGCGACGCTCACCTTTTAAAACCGAGCAC
GAACACATGCAGGGCAGCGTTCTACATGGGCTCGTTGCACTGGGACGATC
ACGGAGTTACCAGCCTCGTGCAGTCCCGCACCGTTAGCGCAACGCTGCCT
GTGGTACTCTGCGCTGCTCACGGCGGGAACGCCGTAGACGGGGACCAGTC
CGAGACGCTTCTGCAAAGGCCTGTGGTGAATCCTTTGCCACGAGGAAGTG
TTGACGTCCCCGGCAAAGCCAGATTGGCAGGGGTAAACCTTGTCGCCGAC
GTAGGGACCTCTCAGCTGCTGGAAGAAATCGATCGACGATTGACGCACAA
GTGCAGCAGCTGCGGCAATGGCGGCTTTGCAACGGCAGTGAGATCGCCAG
CGGCGGTGGTTGCCCGGTTCCACCGCAAGTATGTAGACGCCAATAGGCCG
CTCGAAGACGAAGATGCCATGGCGGTGCATCCTTCCTGCACAAGAGCGCG
GGGGGTGCACCAGAGCTACCACCGAGCTATTGAGACCGCCATCGGTGCTT
TGGAGTCCCGCTGCTGCTGGACACAGGCCGCACGGCCGAGTGGCAGAAAC
CGAGAAGAACGGGACGAGGAAGAACGTGGGAAAGAGACACCCCGAGTACT
ACTGCTAGACGTACACGGCCAGTGCAAGTCGGTCGACAACGTGCTCATAG
GAACTTGCAACGGCAAGACAGCCGACCTGGAGGAACTCAATACGCCCCAT
AAAGGCTTTCTGTGGCACCTGAGGCGGGCCTTCAACCCGAAAGAGGGAGG
AAGAGACGGAGACGTCGGCACGGCAGCGGCAACGGCCGTCAGATACCGCG
GAGAACGAGAAGGAGGGGCAGGCGGAAGAGGAGAGGGAGAACGAGAAGAA
GACCGACAAGGGCGGGAGAAGGAGGCTGCGAACGAGGAAGCGACTACGAA
GCATGTCGGAAACGGCACGAAAAATGAGGCAGTGGTGGTGGTGTTGCCGA
TCCACGGGGAGAAGGAAGTCGCCGGGTACACCGGCGGTTATACCGTGCAA
AGACATGCGAGGAGTCGTGCAGGAGAAGGCGCGGTAGTGCAAGGAAGACC
ACCACAAGCAGCAGTAGAAAAAGGAGAAGAAGAGAGCAGGAGAGGAAGCA
ATCGGGGATCGCTTGCCGTAGATGCCGTCCAGCTAGAATTCGGCACGAGC
TTCCGGCGCACCCCCGAGGCTCGGGCCAACGCGGCCGAGGCGGTTGCCTG
CGCGATTTTCAACCACCTTCAGCAGGGACAAACAAACTGGACATCATGA
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