mRNA_Ecto-sp8_S_contig102139.350.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102139.350.1
Unique NamemRNA_Ecto-sp8_S_contig102139.350.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102139.350.1 vs. uniprot
Match: D7FPR2_ECTSI (NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPR2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.100e-20
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 MKSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQVR 129
            MKSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQ R
Sbjct:   10 MKSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQAR 52
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BLAST of mRNA_Ecto-sp8_S_contig102139.350.1 vs. uniprot
Match: A0A835YPN0_9STRA (NADH dehydrogenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN0_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 8.550e-6
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 KSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQVR 129
            KS G    G+ +P   LYR+I +E+PR+LTIYDVDMD A  R
Sbjct:   11 KSGGGFLGGSTAPIMDLYRSICREIPRVLTIYDVDMDPAVAR 52
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BLAST of mRNA_Ecto-sp8_S_contig102139.350.1 vs. uniprot
Match: A0A6T8KLM5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8KLM5_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 2.730e-5
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:   37 SPATQLYRAIAKEVPRILTIYDVDMDFAQVR 129
            +PA +LYRA+AKE+P +LTIYD+DMD    R
Sbjct:   18 NPAARLYRAVAKEIPFVLTIYDIDMDIPDAR 48
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BLAST of mRNA_Ecto-sp8_S_contig102139.350.1 vs. uniprot
Match: A0A0P1B7E0_PLAHL (NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7E0_PLAHL)

HSP 1 Score: 46.2 bits (108), Expect = 5.700e-5
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   19 SRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQVR 129
            S   TASPA  LYR I K+VPR+LT+YD+ M+ ++ R
Sbjct:   11 SAASTASPAVTLYRYITKQVPRVLTLYDISMEPSEAR 47
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BLAST of mRNA_Ecto-sp8_S_contig102139.350.1 vs. uniprot
Match: A0A7S2S5W3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5W3_9STRA)

HSP 1 Score: 45.8 bits (107), Expect = 7.400e-5
Identity = 18/29 (62.07%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   25 TGTASPATQLYRAIAKEVPRILTIYDVDM 111
            T +A+P+ +LYR+I KE+PR+LTIYD+DM
Sbjct:   13 TASANPSARLYRSIVKELPRVLTIYDIDM 41
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102139.350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPR2_ECTSI3.100e-2097.67NADH dehydrogenase (Ubiquinone) n=2 Tax=Ectocarpus... [more]
A0A835YPN0_9STRA8.550e-654.76NADH dehydrogenase (Fragment) n=1 Tax=Tribonema mi... [more]
A0A6T8KLM5_9STRA2.730e-561.29Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A0P1B7E0_PLAHL5.700e-554.05NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit... [more]
A0A7S2S5W3_9STRA7.400e-562.07Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102139contigEcto-sp8_S_contig102139:43..171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.7163737-CDS-Ecto-sp8_S_contig102139:42..1711681143119.7163737-CDS-Ecto-sp8_S_contig102139:42..171Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102139 43..171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102139.350.1prot_Ecto-sp8_S_contig102139.350.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102139 43..171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102139.350.1

>prot_Ecto-sp8_S_contig102139.350.1 ID=prot_Ecto-sp8_S_contig102139.350.1|Name=mRNA_Ecto-sp8_S_contig102139.350.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=43bp
MKSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQVR
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mRNA from alignment at Ecto-sp8_S_contig102139:43..171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102139.350.1 ID=mRNA_Ecto-sp8_S_contig102139.350.1|Name=mRNA_Ecto-sp8_S_contig102139.350.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102139:43..171- (Ectocarpus species8 EcLAC_412)
ATGAAGAGCGTCGGCCCATCGCGAACTGGTACTGCGTCCCCGGCGACGCA
GTTGTACAGAGCAATCGCAAAGGAGGTGCCTCGAATTCTCACCATTTACG
ACGTCGACATGGACTTTGCTCAGGTACGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102139:43..171-

>mRNA_Ecto-sp8_S_contig102139.350.1 ID=mRNA_Ecto-sp8_S_contig102139.350.1|Name=mRNA_Ecto-sp8_S_contig102139.350.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102139:43..171- (Ectocarpus species8 EcLAC_412)
ATGAAGAGCGTCGGCCCATCGCGAACTGGTACTGCGTCCCCGGCGACGCA
GTTGTACAGAGCAATCGCAAAGGAGGTGCCTCGAATTCTCACCATTTACG
ACGTCGACATGGACTTTGCTCAGGTACGT
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