mRNA_Ecto-sp8_S_contig101595.264.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101595.264.1
Unique NamemRNA_Ecto-sp8_S_contig101595.264.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101595.264.1 vs. uniprot
Match: D8LPC3_ECTSI (EsV-1-92 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPC3_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 6.940e-72
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 1 
Query:    1 CSQTLDGYNPNPFYASGMCPDYMKSECNLGGKLWQNQWDMHKKNIKEFNAERVFHASMGIPTQVVGYGYQPQQQPPLLPPTSSQVFSSMRQMHPHKFQGRNFRPSQFYP 327
            CSQTLDGYNPNPFYASGMCPDYM+SECNLGGKLWQNQWDMHKKNIKEFNAERVFHASMGIPTQVVGYGYQ QQ  PLLPPTSSQVFS+MRQMHPHKFQG   +P QFYP
Sbjct:   14 CSQTLDGYNPNPFYASGMCPDYMRSECNLGGKLWQNQWDMHKKNIKEFNAERVFHASMGIPTQVVGYGYQSQQPHPLLPPTSSQVFSTMRQMHPHKFQGPILKPGQFYP 122
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BLAST of mRNA_Ecto-sp8_S_contig101595.264.1 vs. uniprot
Match: Q8QNI5_ESV1K (EsV-1-92 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNI5_ESV1K)

HSP 1 Score: 218 bits (556), Expect = 6.940e-72
Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    1 CSQTLDGYNPNPFYASGMCPDYMKSECNLGGKLWQNQWDMHKKNIKEFNAERVFHASMGIPTQVVGYGYQPQQQPPLLPPTSSQVFSSMRQMHPHKFQGRNFRPSQFYP 327
            CSQTLDGYNPNPFYASGMCPDYMKSECNLGGKLWQNQWDMHKKNIK+FNAERVFHASMGIPTQVVGYGYQPQQ PPLLPPTSSQVF++MRQM P KFQGR+ +  QFYP
Sbjct:   14 CSQTLDGYNPNPFYASGMCPDYMKSECNLGGKLWQNQWDMHKKNIKDFNAERVFHASMGIPTQVVGYGYQPQQPPPLLPPTSSQVFANMRQMQPRKFQGRHLQAGQFYP 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101595.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPC3_ECTSI6.940e-7290.83EsV-1-92 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNI5_ESV1K6.940e-7289.91EsV-1-92 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101595contigEcto-sp8_S_contig101595:212..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-92
Ec32 orthologEc-06_005890.1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.6565616-CDS-Ecto-sp8_S_contig101595:211..5411681143113.6565616-CDS-Ecto-sp8_S_contig101595:211..541Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101595 212..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101595.264.1prot_Ecto-sp8_S_contig101595.264.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101595 212..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101595.264.1

>prot_Ecto-sp8_S_contig101595.264.1 ID=prot_Ecto-sp8_S_contig101595.264.1|Name=mRNA_Ecto-sp8_S_contig101595.264.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=110bp
CSQTLDGYNPNPFYASGMCPDYMKSECNLGGKLWQNQWDMHKKNIKEFNA
ERVFHASMGIPTQVVGYGYQPQQQPPLLPPTSSQVFSSMRQMHPHKFQGR
NFRPSQFYP*
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mRNA from alignment at Ecto-sp8_S_contig101595:212..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101595.264.1 ID=mRNA_Ecto-sp8_S_contig101595.264.1|Name=mRNA_Ecto-sp8_S_contig101595.264.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101595:212..541- (Ectocarpus species8 EcLAC_412)
TGCTCACAAACCTTGGATGGATACAACCCGAATCCCTTCTACGCGTCCGG
TATGTGCCCGGATTACATGAAGAGCGAGTGCAATCTGGGAGGAAAGCTCT
GGCAAAACCAGTGGGACATGCACAAAAAGAATATCAAAGAATTCAATGCG
GAAAGAGTGTTTCACGCGTCCATGGGGATCCCGACGCAAGTTGTGGGGTA
CGGATACCAGCCCCAGCAACAACCCCCTCTTCTGCCACCCACATCTTCAC
AGGTTTTTTCGAGCATGCGACAGATGCACCCTCACAAATTCCAGGGACGA
AACTTTAGGCCAAGCCAATTTTACCCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101595:212..541-

>mRNA_Ecto-sp8_S_contig101595.264.1 ID=mRNA_Ecto-sp8_S_contig101595.264.1|Name=mRNA_Ecto-sp8_S_contig101595.264.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101595:212..541- (Ectocarpus species8 EcLAC_412)
TGCTCACAAACCTTGGATGGATACAACCCGAATCCCTTCTACGCGTCCGG
TATGTGCCCGGATTACATGAAGAGCGAGTGCAATCTGGGAGGAAAGCTCT
GGCAAAACCAGTGGGACATGCACAAAAAGAATATCAAAGAATTCAATGCG
GAAAGAGTGTTTCACGCGTCCATGGGGATCCCGACGCAAGTTGTGGGGTA
CGGATACCAGCCCCAGCAACAACCCCCTCTTCTGCCACCCACATCTTCAC
AGGTTTTTTCGAGCATGCGACAGATGCACCCTCACAAATTCCAGGGACGA
AACTTTAGGCCAAGCCAATTTTACCCGTAA
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