Ec-00_007190.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007190.1
Unique NameEc-00_007190.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length84
Homology
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BLAST of Ec-00_007190.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.340e-34
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   58 SCYINWCLNEDACIILKKEGVPVNVRFAGEDDVAKRCSDCKRADPTILDTDQLIAKSTQPCH 243
            +CYINWCLNEDACIILK+EG PVNVR AGEDDVAKRCSDCKRAD TILDTDQLIAKSTQPCH
Sbjct:  139 ACYINWCLNEDACIILKEEGAPVNVRLAGEDDVAKRCSDCKRADSTILDTDQLIAKSTQPCH 200
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BLAST of Ec-00_007190.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.290e-28
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   58 SCYINWCLNEDACIILKKEGVPVNVRFAGEDD---VAKRCSDCKRADPTILDTDQLIAKSTQPCHFG 249
            +C+INWCLN +ACI+LK +GVPVNVR AGEDD   V KRC DCKRADPTILDTDQLIAKSTQP H G
Sbjct:  138 ACHINWCLNAEACIVLKGDGVPVNVRLAGEDDANCVGKRCRDCKRADPTILDTDQLIAKSTQPFHVG 204
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BLAST of Ec-00_007190.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.000e-8
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   58 SCYINWCLNEDACIILKKEGVPVNVRFAGEDDV 156
            +CYI WCLN DA IILK+EGVPVN R AGEDDV
Sbjct:  176 ACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
The following BLAST results are available for this feature:
BLAST of Ec-00_007190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LET1_ECTSI1.340e-3491.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCU2_9PHAE2.290e-2877.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKW7_ECTSI2.000e-878.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11406267..11407207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length252
Hectar predicted targeting categoryother localisation
Gene idEc-00_007190.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007190Ec-00_007190Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11406267..11407207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007190.1.2Ec-00_007190.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11406267..11406365 -
Ec-00_007190.1.1Ec-00_007190.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11407055..11407207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007190.1CDS:Ec-00_007190.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11406267..11406365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007190.1Ec-00_007190.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11406267..11407207 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007190.1 ID=Ec-00_007190.1|Name=Ec-00_007190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=84bp
MWMCSSPSLLVIKETWNALSCYINWCLNEDACIILKKEGVPVNVRFAGED
DVAKRCSDCKRADPTILDTDQLIAKSTQPCHFG*
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spliced messenger RNA

>Ec-00_007190.1 ID=Ec-00_007190.1|Name=Ec-00_007190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=252bp|location=Sequence derived from alignment at chr_00:11406267..11407207- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGATGTGTTCATCGCCTTCCCTTCTTGTGATCAAAGAGACGTGGAA
CGCCCTTTCGTGTTACATAAACTGGTGCCTCAACGAGGACGCCTGCATCA
TCCTCAAGAAGGAGGGCGTCCCGGTCAACGTTAGGTTTGCCGGCGAGGAC
GACGTTGCAAAGCGCTGCAGTGACTGCAAACGTGCCGACCCGACCATACT
GGACACGGACCAATTAATCGCCAAGTCCACCCAGCCGTGCCACTTCGGCT
AA
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protein sequence of Ec-00_007190.1

>Ec-00_007190.1 ID=Ec-00_007190.1|Name=Ec-00_007190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=84bp
MWMCSSPSLLVIKETWNALSCYINWCLNEDACIILKKEGVPVNVRFAGED
DVAKRCSDCKRADPTILDTDQLIAKSTQPCHFG*
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mRNA from alignment at chr_00:11406267..11407207-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007190.1 ID=Ec-00_007190.1|Name=Ec-00_007190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=941bp|location=Sequence derived from alignment at chr_00:11406267..11407207- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGGATGTGTTCATCGCCTTCCCTTCTTGTGATCAAAGAGACGTGGAA
CGCCCTTTCGTGTTACATAAACTGGTGCCTCAACGAGGACGCCTGCATCA
TCCTCAAGAAGGAGGGCGTCCCGGTCAACGTTAGGTTTGCCGGCGAGGAC
GACGTGAGTCCTTTTATTTTCTGTTTCACAAAACTATCTACCTATTTATG
TGTTTCCAGTCCCTACCCCCTTCTGTCTGCCTGACCAACACAACACGACA
CCAATCATTATTGATGTTCCTGCCCGTTAGTATGCGCACTGCCATGTTAG
GCATGTGTTCCACTGTCCTTTCCTGCCCAACACAACACCAGATTTAATAA
CCTGCCCGAACATATCCGCACGCACATGCTCGGTGCAACGTGTGTTGCCG
CAAGACATTTTTTATTTCATCCTACATGTCCACACCTTCTTTTGGTGTTC
GACACCATTACTGACTATGCGCACATACGTGTTTGTTATGTATGTGTTCC
TGTCATTCCTGCTGCGCAAACACTACAGCTGACGCAGGACCCACTTCTTT
TCATGTTCATTCGTAGTGTATGTGCACGCTTTTTTTTTGTGTTCCACGCC
ATTTTTTTAAGTGTTCCTGCCCGTGAATGAATATGCACACGCACATGTTC
TTTGGTATGGTTCGTGATCTTTCTGCTGCCAACGCAATTATGCTCACGCA
GGACAGCTGTTTTTTCCACACCATCATTTGCAAATTTCCTCTGTGTTCTG
TTCTTAACACTATATTTGCTGCGCAACGACATAATGCTGACGCAGGACGC
ATCTTTTTTCCCTTCCACATTTTTCTCGTGCAATTCCTACAGGTTGCAAA
GCGCTGCAGTGACTGCAAACGTGCCGACCCGACCATACTGGACACGGACC
AATTAATCGCCAAGTCCACCCAGCCGTGCCACTTCGGCTAA
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Coding sequence (CDS) from alignment at chr_00:11406267..11407207-

>Ec-00_007190.1 ID=Ec-00_007190.1|Name=Ec-00_007190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=252bp|location=Sequence derived from alignment at chr_00:11406267..11407207- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGGATGTGTTCATCGCCTTCCCTTCTTGTGATCAAAGAGACGTGGAA
CGCCCTTTCGTGTTACATAAACTGGTGCCTCAACGAGGACGCCTGCATCA
TCCTCAAGAAGGAGGGCGTCCCGGTCAACGTTAGGTTTGCCGGCGAGGAC
GACGTTGCAAAGCGCTGCAGTGACTGCAAACGTGCCGACCCGACCATACT
GGACACGGACCAATTAATCGCCAAGTCCACCCAGCCGTGCCACTTCGGCT
AA
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Synonyms
The feature 'Ec-00_007190.1' has the following synonyms
Synonym
Esi542_0010
Esi_542_0010