Ec-00_000710.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000710.2
Unique NameEc-00_000710.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length177
Homology
[Close]
BLAST of Ec-00_000710.2 vs. uniprot
Match: D7FI19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI19_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 1.370e-94
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:    1 MAVVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGAEASEVRDAMSIALTRKGTKGAAATAGPNRGGDLAGDAPEGARGGRGSASPRGXXXXXXXXXXRKGARGSGSGVEAEAWPGLEEALKESEKKVTPVAEAGPATAPVVGSSGQGIGMRARPAGGEAKDESAKRIR 525
            MAVVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGAEASEVRDAMSIALTRKGTKGAAATAGPNRGGDLAGDAPEGARGGRGSASPRGXXXXXXXXXXRKGARGSGSGVEAEAWPGLEEALKESEKKVTPVAEAGPATAPVVGSSGQGIGMRARPAGGEAKDESAKRIR
Sbjct:    1 MAVVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGAEASEVRDAMSIALTRKGTKGAAATAGPNRGGDLAGDAPEGARGGRGSASPRGXXXXXXXXXXRKGARGSGSGVEAEAWPGLEEALKESEKKVTPVAEAGPATAPVVGSSGQGIGMRARPAGGEAKDESAKRIR 175
The following BLAST results are available for this feature:
BLAST of Ec-00_000710.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI19_ECTSI1.370e-94100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:933027..935692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1801
Hectar predicted targeting categoryother localisation
Gene idEc-00_000710.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000710Ec-00_000710Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 933027..935692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000710.2.3Ec-00_000710.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 933027..934479 -
Ec-00_000710.2.2Ec-00_000710.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 934963..935223 -
Ec-00_000710.2.1Ec-00_000710.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 935606..935692 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0007103UTR:Ec-00_000710.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 933027..934296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000710.2CDS:Ec-00_000710.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 934297..934479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000710.2Ec-00_000710.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 934297..935692 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000710.2 ID=Ec-00_000710.2|Name=Ec-00_000710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=177bp
MAVVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGAEASEVRDA
MSIALTRKGTKGAAATAGPNRGGDLAGDAPEGARGGRGSASPRGGGSASP
KRGGRKGARGSGSGVEAEAWPGLEEALKESEKKVTPVAEAGPATAPVVGS
SGQGIGMRARPAGGEAKDESAKRIRK*
back to top

spliced messenger RNA

>Ec-00_000710.2 ID=Ec-00_000710.2|Name=Ec-00_000710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1801bp|location=Sequence derived from alignment at chr_00:933027..935692- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCGTCATCGACGAGTGCCCGCCCCTGGCAAAGCTTTTCGAGGG
GGGCTTCCTGGAGAAGCGCTTCCAAGAAGTGTTTCAGGTTCCCAGTGCGG
TGCTGGCAAGATCGGGGGCGGGAGCGGAGGCCTCCGAAGTCCGGGACGCG
ATGTCTATTGCATTGACGAGGAAGGGAACGAAAGGAGCCGCCGCCACCGC
CGGACCCAATCGTGGTGGTGATCTCGCTGGAGACGCGCCGGAGGGCGCCC
GGGGGGGACGGGGTTCCGCTTCTCCTCGCGGGGGGGGCTCGGCCTCTCCG
AAACGGGGAGGGCGGAAGGGCGCCCGGGGATCGGGATCAGGCGTAGAGGC
CGAAGCCTGGCCGGGACTCGAAGAAGCTCTCAAGGAATCAGAAAAGAAGG
TCACCCCTGTGGCGGAGGCGGGACCGGCGACGGCACCGGTGGTAGGCAGT
AGCGGCCAGGGCATCGGGATGAGGGCCCGCCCGGCGGGTGGGGAAGCCAA
GGACGAGTCCGCTAAGCGGATCCGAAAGTGAGTGGGAGGGGGAGGACAGA
CAGACAGACAAGCAGCGAGAGAGAGAGAGAGCGAGGGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTCGCCCACATTTCGCTT
TGTTTTTTCGGAGATCTAGCCGTGTTTTTATTTACTCTCTCTGAGGTTGA
TGTTCAACAATCGTCCTGTCCTACGACGGTTTTTGTGTGTTTTGGGGGGG
GGTATGGGGGCTACAGCCGATGCAACCGAGTCCATGTGAAGGTCATCCCA
GGGCCGGCAAAGCTGGTTCACCTTCAGGGCTGCTTCGGACAAGGATAGGC
CAGCTTGTAGCTGTGATCACGATGCGGATGGAGCCTGTTTGCACGTCAGC
TTGAGAGTTCGTATCTATCGATGGGAATCCTCTTCAATGATGCCAAGCTA
CTGGAGAATTCTCGGACGCCTTCGTTTTTCCTCTACCTCGGGAGAACCAA
CATGAGTTATTTGCTTGCGCTAGATGGTGTTTTGAGATCTGATTGTCCCC
GCACCGGTGTCCAGGCGTGTTTCACGGCGACCGTTTGCGCGTACTTTGCG
ATGATGCCGGCCTTCCGGTTGTCGACCGGCTTGGTCGGTGATGGTGTTGT
CGTAGCCAAGATACGGAACCAGGAACTCGATTCATCGGTATCCGCCGCCC
CCTGTCTCGATAGGTAGAGGTGATGCGTAATCCGCGCTAAATCCAACGGG
ATGAATACCTGTACCCCTAATCGTCACGAATTTTGATCCGAGAACCCCCC
CGTCCCGCCCGTGGGTTTTCGCCGCCAAGGCCCCCGCCGCCGGTGCCGTC
TACGTTCGGGTTCGCTCCGGCCCCGCCCCCGCGCCGCGCGGCCACGCAAG
CCCTCCACCGCATGTCCTCGCTGTCCTCCTCCTCCTCTCCCCCGCCCTCG
CCGGGGGGGGTGGCATCATCGTGTCCCGCCGTCGCGCCGTGGCAACCGGC
GCCAGCAGCGGAAGACGTCAAGCCGCCGTTGCCGGCGGTGGCGGTGGCGT
TTGGGATCGGGATGAACGGCCAGGGGGACACCGAGGAAGGGAACATGCCT
GGGGGAGGTAAGGCGGAAGGGCAGAACAAGAAGGAGAAGGAGGCGGTCGT
AGAGGAAAGTCTGCCGTGGCGGCCACGGCCAGGCGTCGGAAGGGAAAATA
CCGAGAATCCGCGCCCGGCCGTTGCCGCTGCTTCTGGCTCCGAAGGAACT
TGCTCTCTCCCCGCGGGCGCGAGCACAGAAGGGACGGATGGCGGCGGCGG
G
back to top

protein sequence of Ec-00_000710.2

>Ec-00_000710.2 ID=Ec-00_000710.2|Name=Ec-00_000710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=177bp
MAVVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGAEASEVRDA
MSIALTRKGTKGAAATAGPNRGGDLAGDAPEGARGGRGSASPRGGGSASP
KRGGRKGARGSGSGVEAEAWPGLEEALKESEKKVTPVAEAGPATAPVVGS
SGQGIGMRARPAGGEAKDESAKRIRK*
back to top

mRNA from alignment at chr_00:933027..935692-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000710.2 ID=Ec-00_000710.2|Name=Ec-00_000710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2666bp|location=Sequence derived from alignment at chr_00:933027..935692- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCGTCGTCATCGACGAGTGCCCGCCCCTGGCAAAGCTTTTCGAGGG
GGGCTTCCTGGAGAAGCGCTTCCAAGAAGTGTTTCAGGTCAAAAGCCAGG
GTGCATACTCACCACCATACATGCATGCACTGGATGATGGTGGTGTACAG
CCAGGCAGCGGCTACGTGTGTTTCCCCTTTTCCCGCGTGCATCGTTGTGG
CCGTCCCTGCTGTTAGATACCGGAGACTGTTTCCCTGTGGTTGTCCGGTT
GGTGAGCGTTTTGTTCTGTCGAGCACGGCGAGAGCCTCATTTGTGTTCCT
TGTTGTGGGTGTTCGGTGAGCGACCAGTCAACCGTGGAGGACGCTCGGTG
AATTGTTGGGTAGTTCTCCCTGGGGTTTCCACATCCCGTGTGGCACAGCC
GACGCCCTTGTTGATGGTGTTTTGTTATTTGTTCGTCGTCAACTCGCGGC
GGGATTCCGGTATTAGCAGGTTCCCAGTGCGGTGCTGGCAAGATCGGGGG
CGGGAGCGGAGGCCTCCGAAGTCCGGGACGCGATGTCTATTGCATTGACG
AGGAAGGGAACGAAAGGAGCCGCCGCCACCGCCGGACCCAATCGTGGTGG
TGATCTCGCTGGAGACGCGCCGGAGGGCGCCCGGGGGGGACGGGGTTCCG
CTTCTCCTCGCGGGGGGGGCTCGGCCTCTCCGAAACGGGGAGGGCGGAAG
GGCGCCCGGGGATCGGGATCAGGCGTAGAGGTGCGTGACAGCACTGGTAT
CATTGAGAGGGAGGCGTGCTGCTGAGGTTTGTCTGGTGTCGACGCTGGGG
TAGGGTGGTTTTCGAGACTGATGAGCTAGCTCCAGAGATCTTTTCACCCT
GGGTTTTGGTTTCGACCTTACTTGGGCGCCAAATTTACGAACGCATGCCA
ACCAGGACGCACGTCGAGGAAAATATTTGGCCCGTCGCTCTCACGCCGAC
AGCGGTACCATCGGCGGCGGAAAACGGTTGTCTCGAATACAGCATGAGGC
ATTAGGCAAGCTGGAGGTCTAACATAGCGCGCGTTTTTAAACCTATTTTT
TCGTGTCTTGTTTTTGGTATCTTTCCAGCATGTGTCACCGCTTGATCTGT
TTCGCCAAACTATCACCCTCCAGACCGTATGAGTTGGAACAAACACCCTC
GTTCAGTTGTTTTCAAGCGGTCTCAAGTTCTTGCCGGTTCCTCGCTTGCC
GCCCGTACCGTAGGCCGAAGCCTGGCCGGGACTCGAAGAAGCTCTCAAGG
AATCAGAAAAGAAGGTCACCCCTGTGGCGGAGGCGGGACCGGCGACGGCA
CCGGTGGTAGGCAGTAGCGGCCAGGGCATCGGGATGAGGGCCCGCCCGGC
GGGTGGGGAAGCCAAGGACGAGTCCGCTAAGCGGATCCGAAAGTGAGTGG
GAGGGGGAGGACAGACAGACAGACAAGCAGCGAGAGAGAGAGAGAGCGAG
GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTC
GCCCACATTTCGCTTTGTTTTTTCGGAGATCTAGCCGTGTTTTTATTTAC
TCTCTCTGAGGTTGATGTTCAACAATCGTCCTGTCCTACGACGGTTTTTG
TGTGTTTTGGGGGGGGGTATGGGGGCTACAGCCGATGCAACCGAGTCCAT
GTGAAGGTCATCCCAGGGCCGGCAAAGCTGGTTCACCTTCAGGGCTGCTT
CGGACAAGGATAGGCCAGCTTGTAGCTGTGATCACGATGCGGATGGAGCC
TGTTTGCACGTCAGCTTGAGAGTTCGTATCTATCGATGGGAATCCTCTTC
AATGATGCCAAGCTACTGGAGAATTCTCGGACGCCTTCGTTTTTCCTCTA
CCTCGGGAGAACCAACATGAGTTATTTGCTTGCGCTAGATGGTGTTTTGA
GATCTGATTGTCCCCGCACCGGTGTCCAGGCGTGTTTCACGGCGACCGTT
TGCGCGTACTTTGCGATGATGCCGGCCTTCCGGTTGTCGACCGGCTTGGT
CGGTGATGGTGTTGTCGTAGCCAAGATACGGAACCAGGAACTCGATTCAT
CGGTATCCGCCGCCCCCTGTCTCGATAGGTAGAGGTGATGCGTAATCCGC
GCTAAATCCAACGGGATGAATACCTGTACCCCTAATCGTCACGAATTTTG
ATCCGAGAACCCCCCCGTCCCGCCCGTGGGTTTTCGCCGCCAAGGCCCCC
GCCGCCGGTGCCGTCTACGTTCGGGTTCGCTCCGGCCCCGCCCCCGCGCC
GCGCGGCCACGCAAGCCCTCCACCGCATGTCCTCGCTGTCCTCCTCCTCC
TCTCCCCCGCCCTCGCCGGGGGGGGTGGCATCATCGTGTCCCGCCGTCGC
GCCGTGGCAACCGGCGCCAGCAGCGGAAGACGTCAAGCCGCCGTTGCCGG
CGGTGGCGGTGGCGTTTGGGATCGGGATGAACGGCCAGGGGGACACCGAG
GAAGGGAACATGCCTGGGGGAGGTAAGGCGGAAGGGCAGAACAAGAAGGA
GAAGGAGGCGGTCGTAGAGGAAAGTCTGCCGTGGCGGCCACGGCCAGGCG
TCGGAAGGGAAAATACCGAGAATCCGCGCCCGGCCGTTGCCGCTGCTTCT
GGCTCCGAAGGAACTTGCTCTCTCCCCGCGGGCGCGAGCACAGAAGGGAC
GGATGGCGGCGGCGGG
back to top

Coding sequence (CDS) from alignment at chr_00:933027..935692-

>Ec-00_000710.2 ID=Ec-00_000710.2|Name=Ec-00_000710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=531bp|location=Sequence derived from alignment at chr_00:933027..935692- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCGTCGTCATCGACGAGTGCCCGCCCCTGGCAAAGCTTTTCGAGGG
GGGCTTCCTGGAGAAGCGCTTCCAAGAAGTGTTTCAGGTTCCCAGTGCGG
TGCTGGCAAGATCGGGGGCGGGAGCGGAGGCCTCCGAAGTCCGGGACGCG
ATGTCTATTGCATTGACGAGGAAGGGAACGAAAGGAGCCGCCGCCACCGC
CGGACCCAATCGTGGTGGTGATCTCGCTGGAGACGCGCCGGAGGGCGCCC
GGGGGGGACGGGGTTCCGCTTCTCCTCGCGGGGGGGGCTCGGCCTCTCCG
AAACGGGGAGGGCGGAAGGGCGCCCGGGGATCGGGATCAGGCGTAGAGGC
CGAAGCCTGGCCGGGACTCGAAGAAGCTCTCAAGGAATCAGAAAAGAAGG
TCACCCCTGTGGCGGAGGCGGGACCGGCGACGGCACCGGTGGTAGGCAGT
AGCGGCCAGGGCATCGGGATGAGGGCCCGCCCGGCGGGTGGGGAAGCCAA
GGACGAGTCCGCTAAGCGGATCCGAAAGTGA
back to top
Synonyms
The feature 'Ec-00_000710.2' has the following synonyms
Synonym
Esi1166_0002
Esi_1166_0002