Ec-00_000660.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000660.2
Unique NameEc-00_000660.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length178
Homology
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BLAST of Ec-00_000660.2 vs. uniprot
Match: A0A6H5JDI2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI2_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 5.900e-48
Identity = 241/294 (81.97%), Postives = 249/294 (84.69%), Query Frame = -2 
Query:   15 FTSGGEEGDRTNRSGGGAGKEEEREAAVLAGVGGTRERAGSDAGRREPKRQRGFLFSLAAATGARPLPRTIPPVSSSSSLAPIVLAGSPCSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAATRPSAXXXXAPLDVLDLSMMSASPLEVIDVLDDCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXDXXXXSHASAAGSTRAGNGRSPETKRSVSTDPLGPSHPRTIRRRKNFFGPAGRA 896
             TSGGEE D+ NRSG GAG+E      VLAGVGGTR RAGSDAGRREPKR+RGFL SLAAATGARPLPR IPP SS SSLAPIVLA SPCSSL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXX APLDVLDLS MSASP+EVIDVLDDCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX     +H+SAA S RA NGRSPETKRSVST PLG   PRTI RRK+F+ PAGRA
Sbjct:  203 LTSGGEEADKINRSGRGAGEEXXXXXXVLAGVGGTRRRAGSDAGRREPKRKRGFLVSLAAATGARPLPRKIPPASSFSSLAPIVLANSPCSSLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLDVLDLSTMSASPMEVIDVLDDCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---THSSAAWSRRAVNGRSPETKRSVSTGPLGLFRPRTINRRKSFYAPAGRA 493
The following BLAST results are available for this feature:
BLAST of Ec-00_000660.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI2_9PHAE5.900e-4881.97RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:890885..891912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1028
Hectar predicted targeting categoryother localisation
Gene idEc-00_000660.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000660Ec-00_000660Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 890885..891912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000660.2.1Ec-00_000660.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 890885..891912 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0006605UTR:Ec-00_000660.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 890885..891246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000660.2CDS:Ec-00_000660.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 891247..891780 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0006603UTR:Ec-00_000660.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 891781..891912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000660.2Ec-00_000660.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 891247..891780 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000660.2 ID=Ec-00_000660.2|Name=Ec-00_000660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=178bp
MPTSWRGQAHPAGRRRTRRKAGLPPAMLTTSYSEQPRWRARATPPVLSDD
YLPTRKAPPPPTRPRQQVLTAATGSSRDEREAVAATATSKGCRLEQLVRG
TRKRTPVVLSVAKVEHPSLLREKTGNHADASAPADLHRFPPSPLFLQLPR
GQQPLALPPFPRHRRFDLSCPPLPPRW*
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spliced messenger RNA

>Ec-00_000660.2 ID=Ec-00_000660.2|Name=Ec-00_000660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1028bp|location=Sequence derived from alignment at chr_00:890885..891912+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGCAGCAGCACCCGCGGCGCGGCCAGCAGGGCCGAAAAAGTTCTTCCTTC
TCCGAATCGTTCGCGGGTGAGAGGGCCCCAAGGGGTCCGTCGAAACGGAT
CGTTTGGTCTCAGGACTTCTCCCGTTCCCCGCGCGTGTGCTCCCAGCGGC
GGAGGCATGGCTGCCCCCGGCCCCGTCGGAGCTTCTGCCGCCGCCGCCGC
CGCCGCTGCTGCTGCTCGCACCCGGCCGGACGGCGGCTGTAGTCGAGCCG
CTGCCGTTCCTCGCCGCGCTTTTTGGTCGCCGTTGGGGGGGGACGACGGC
ACTGCTGCTGTTGCTGTCGTCGTCACCGCAATCGTCCAGCACGTCGATGA
CCTCCAGCGGCGATGCCGACATCATGGAGAGGTCAAGCACATCCAGCGGG
GCGGAGGAGGACGAGGCGGAAGGCCGGGTTGCCGCCGGCGATGTTGACGA
CGAGCTACTCCGAGCAGCCTCGCTGGAGGGCGCGGGCAACTCCTCCGGTC
CTTTCCGACGACTATCTCCCGACGAGGAAGGCTCCGCCGCCGCCAACTCG
TCCTCGCCAGCAAGTCCTGACGGCGGCGACGGGGTCGAGCCGCGACGAGC
GGGAGGCGGTGGCGGCGACAGCGACGAGCAAGGGCTGCCGGCTAGAACAA
TTGGTGCGAGGGACGAGGAAGAGGACACCGGTGGTATTGTCCGTGGCAAA
GGTCGAGCACCCGTCGCTGCTGCGAGAGAAAACAGGAAACCACGCTGACG
CTTCGGCTCCCGCCGACCTGCATCGCTTCCCGCCCTCTCCCTTGTTCCTC
CAACTCCCGCGAGGACAGCAGCCTCTCGCTCTTCCTCCTTTCCCGCGCCA
CCGCCGCTTCGATTTGTCCTGTCCCCCTCTTCCCCCCCGCTGGTGAGAAC
AACTTCTTCCTCCGATTGTCCTTTCGGGAGGCGCCGTGGTCGCCGACGGG
GCGGCGTTGCGGTCAAAGCACGAGCCCTGTCGGACAAGAATGGCGGCGGA
AACGACGCCGACAGGCTGCTGCTGCTGC
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protein sequence of Ec-00_000660.2

>Ec-00_000660.2 ID=Ec-00_000660.2|Name=Ec-00_000660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=178bp
MPTSWRGQAHPAGRRRTRRKAGLPPAMLTTSYSEQPRWRARATPPVLSDD
YLPTRKAPPPPTRPRQQVLTAATGSSRDEREAVAATATSKGCRLEQLVRG
TRKRTPVVLSVAKVEHPSLLREKTGNHADASAPADLHRFPPSPLFLQLPR
GQQPLALPPFPRHRRFDLSCPPLPPRW*
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mRNA from alignment at chr_00:890885..891912+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000660.2 ID=Ec-00_000660.2|Name=Ec-00_000660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1028bp|location=Sequence derived from alignment at chr_00:890885..891912+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGCAGCAGCACCCGCGGCGCGGCCAGCAGGGCCGAAAAAGTTCTTCCTTC
TCCGAATCGTTCGCGGGTGAGAGGGCCCCAAGGGGTCCGTCGAAACGGAT
CGTTTGGTCTCAGGACTTCTCCCGTTCCCCGCGCGTGTGCTCCCAGCGGC
GGAGGCATGGCTGCCCCCGGCCCCGTCGGAGCTTCTGCCGCCGCCGCCGC
CGCCGCTGCTGCTGCTCGCACCCGGCCGGACGGCGGCTGTAGTCGAGCCG
CTGCCGTTCCTCGCCGCGCTTTTTGGTCGCCGTTGGGGGGGGACGACGGC
ACTGCTGCTGTTGCTGTCGTCGTCACCGCAATCGTCCAGCACGTCGATGA
CCTCCAGCGGCGATGCCGACATCATGGAGAGGTCAAGCACATCCAGCGGG
GCGGAGGAGGACGAGGCGGAAGGCCGGGTTGCCGCCGGCGATGTTGACGA
CGAGCTACTCCGAGCAGCCTCGCTGGAGGGCGCGGGCAACTCCTCCGGTC
CTTTCCGACGACTATCTCCCGACGAGGAAGGCTCCGCCGCCGCCAACTCG
TCCTCGCCAGCAAGTCCTGACGGCGGCGACGGGGTCGAGCCGCGACGAGC
GGGAGGCGGTGGCGGCGACAGCGACGAGCAAGGGCTGCCGGCTAGAACAA
TTGGTGCGAGGGACGAGGAAGAGGACACCGGTGGTATTGTCCGTGGCAAA
GGTCGAGCACCCGTCGCTGCTGCGAGAGAAAACAGGAAACCACGCTGACG
CTTCGGCTCCCGCCGACCTGCATCGCTTCCCGCCCTCTCCCTTGTTCCTC
CAACTCCCGCGAGGACAGCAGCCTCTCGCTCTTCCTCCTTTCCCGCGCCA
CCGCCGCTTCGATTTGTCCTGTCCCCCTCTTCCCCCCCGCTGGTGAGAAC
AACTTCTTCCTCCGATTGTCCTTTCGGGAGGCGCCGTGGTCGCCGACGGG
GCGGCGTTGCGGTCAAAGCACGAGCCCTGTCGGACAAGAATGGCGGCGGA
AACGACGCCGACAGGCTGCTGCTGCTGC
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Coding sequence (CDS) from alignment at chr_00:890885..891912+

>Ec-00_000660.2 ID=Ec-00_000660.2|Name=Ec-00_000660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=534bp|location=Sequence derived from alignment at chr_00:890885..891912+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGACATCATGGAGAGGTCAAGCACATCCAGCGGGGCGGAGGAGGAC
GAGGCGGAAGGCCGGGTTGCCGCCGGCGATGTTGACGACGAGCTACTCCG
AGCAGCCTCGCTGGAGGGCGCGGGCAACTCCTCCGGTCCTTTCCGACGAC
TATCTCCCGACGAGGAAGGCTCCGCCGCCGCCAACTCGTCCTCGCCAGCA
AGTCCTGACGGCGGCGACGGGGTCGAGCCGCGACGAGCGGGAGGCGGTGG
CGGCGACAGCGACGAGCAAGGGCTGCCGGCTAGAACAATTGGTGCGAGGG
ACGAGGAAGAGGACACCGGTGGTATTGTCCGTGGCAAAGGTCGAGCACCC
GTCGCTGCTGCGAGAGAAAACAGGAAACCACGCTGACGCTTCGGCTCCCG
CCGACCTGCATCGCTTCCCGCCCTCTCCCTTGTTCCTCCAACTCCCGCGA
GGACAGCAGCCTCTCGCTCTTCCTCCTTTCCCGCGCCACCGCCGCTTCGA
TTTGTCCTGTCCCCCTCTTCCCCCCCGCTGGTGA
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Synonyms
The feature 'Ec-00_000660.2' has the following synonyms
Synonym
Esi151_0004
Esi_151_0004