Ec-00_000650.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000650.1
Unique NameEc-00_000650.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length49
Homology
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BLAST of Ec-00_000650.1 vs. uniprot
Match: D7FI15_ECTSI (zf-rbx1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI15_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 6.700e-26
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:  208 MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSVNDSG 351
            MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSVNDSG
Sbjct:    1 MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSVNDSG 48
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BLAST of Ec-00_000650.1 vs. uniprot
Match: A0A6H5JDI2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.260e-21
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:  208 MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSVNDSG 351
            MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSVNDSG
Sbjct:  821 MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSVNDSG 868
The following BLAST results are available for this feature:
BLAST of Ec-00_000650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI15_ECTSI6.700e-26100.00zf-rbx1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JDI2_9PHAE1.260e-21100.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:887583..889939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1514
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_000650.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000650Ec-00_000650Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 887583..889939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000650.1Ec-00_000650.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 888741..889354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000650.1.3Ec-00_000650.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 887583..888822 -
Ec-00_000650.1.2Ec-00_000650.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 889290..889467 -
Ec-00_000650.1.1Ec-00_000650.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 889844..889939 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0006503UTR:Ec-00_000650.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 887583..888740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000650.1CDS:Ec-00_000650.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 888741..888822 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0006505UTR:Ec-00_000650.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 889355..889467 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000650.1 ID=Ec-00_000650.1|Name=Ec-00_000650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=49bp
MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSVNDSG*
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spliced messenger RNA

>Ec-00_000650.1 ID=Ec-00_000650.1|Name=Ec-00_000650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1514bp|location=Sequence derived from alignment at chr_00:887583..889939- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCGGTGGCGGCGGGGCGGGGCATCCGGCCGGAAGCTTGGCGTCGCTGCAG
GGAAGGGAGCTGACCTCTGAGGATTACCAGCAGCTTCTGGCGTTGGACGA
CACCGGCGGCGGTGGGGGCGCCAAGAACGGGCTTTCCCCGTCAGAGATCG
CGTTACTCCCGCAGCAAACTGGCAACGGGAGCGGTCCTGTTGACCAGTGC
TGCGTTTGCATGGAGGACATGAAGCCGAGGGAAAAGATCACCCGCCTGCC
GGCCTGCCTCCACACGTTTCACAGCAAGTGCATCTCGAAGTGGCTCAAAG
AGAAGCCCTGCTGCCCCATCGACAAAGTTGCTGTCAGCGTGAACGACTCC
GGGTGAGCTTCTCGTCGACCCCGCGAGCGAGCGGACAACAGCCGGCAGCT
TCCTTCGAACGAGTTGCCCTGTGGCGAACGCGCTCGCGCTCGCGTGTGTA
TGTTATTTGGTGGTCGTCGCTGGGGCTGTTGTATATTTGGCCCTTGGTCC
TTTGGCGTGCCCCTCCTGCTCGACCCCACCTTTTGTCGGCGTGGACTGCT
TTACATTGCGAAGAATTAGGAACGAATGGAATCAAGGCAGCAGTCGGCTA
TTGTTTTGCCCGCGGAGATGCGGCCCACCTGGACTGCAAGGCATTCACGT
GAGCGGTGATGCTGATGGGCGGGAGAATCTTTTACGGGGGGGTCGTGGAT
TTGTCGTGTCCGCTGTGTGCCCTCGGAGCACCCTAGACGGACACGTGCGG
GCTGGGGCGAGAGGGAAGAGTTGCCGGGCTGGCGGGAGGGGTGTGGAGGG
GAACGTGGACGTAGTGAACGGACAGATATTTTTGTGAGGGCTCCTGCAGG
CGTTTTGCTCGCTCAGGAAGGCTAGCTGTATCTACCTGAGGCACCTGCAT
GTCCTGGAGACACGTTGGTACGTTGGTACGCCCGAGAGTTTGTTGGACGT
CTATCGGTGCTGTTCATGGTGACTTTTGCCTTGCCGTTCTCAGGCAGACC
GACTGCTAAGGCTCTTGAATTGGCTTGGGTGCCCTGGGGGGGTCAAATTG
TTGGCTTCGCGGGTATTTGAGCGTGAGCAGGGGAAGGGCGGTGATCGTAC
ATCGAGCGCTCTCTCTCCCTCTCTCTTGCTCATTATGCCTATGTCTGCGC
AGTCCTCTCCACCCCCCAATCTCCGACCCGCGGGGTTGATGACATGTTGA
AACTGCTGCTGTTTCATTGCAGCCTCTGCCGGCGCTCGTCGCCGCTTTGT
GAGGCAGGGAGGCAGGGATACGAGCCCGTCGGCGTGAGTTTTCTCGTGTT
TTTTGAGGATTTTGCCTCTTTCGGTCGGTCACTCTTGGACGCACGGGTGT
ACTCCCCGGAAGGTAAAAAGCATTCGGGCACACCCGGCATGAATGATTTT
ACGGGGCCTCTTCATCTCGTGGGTGTTGGAGCAAGGCGAACGTTGGGGTG
TGGCTGGTTTTGGTTCCGGAGTCCACCTTCGCTTGCAAATCGATGCGTTC
GTCTTGGTTGGGGG
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protein sequence of Ec-00_000650.1

>Ec-00_000650.1 ID=Ec-00_000650.1|Name=Ec-00_000650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=49bp
MEDMKPREKITRLPACLHTFHSKCISKWLKEKPCCPIDKVAVSVNDSG*
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mRNA from alignment at chr_00:887583..889939-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000650.1 ID=Ec-00_000650.1|Name=Ec-00_000650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2357bp|location=Sequence derived from alignment at chr_00:887583..889939- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCGGTGGCGGCGGGGCGGGGCATCCGGCCGGAAGCTTGGCGTCGCTGCAG
GGAAGGGAGCTGACCTCTGAGGATTACCAGCAGCTTCTGGCGTTGGGTGA
GTGAGTGAGACACGGGTGGGTGTTGCGGTTGCGTTGCACGCCGCCCGTCG
TCAGGAGGGATGAGCCTCACGCAGCAGCGGGAACCGCTGTTCAGTCAGCG
TTTAGCGTTAGCGAACAAAACGAAATGTGTAGATTTCTCGCATTCCCGCT
TGTCGGGAGGGTTGTGTTTACGGTGGCACACACGCTACTAAAATTGCAGT
AAGTATATGGCTCTTTGACGGAAGGTTAACGGCTCTTTGAGGGAAGGATA
ACGACCTTCCGGGAGTGTCGGCGTGCGAGGTGGTTTCCTTTCATCCCCGT
CTCGACGCACGAAGCCGAGCGAAATCTCACCCTTGTTTACCCACTGGTGG
TTCTCCCGGCGCGCCCGCGCAGACGACACCGGCGGCGGTGGGGGCGCCAA
GAACGGGCTTTCCCCGTCAGAGATCGCGTTACTCCCGCAGCAAACTGGCA
ACGGGAGCGGTCCTGTTGACCAGTGCTGCGTTTGCATGGAGGACATGAAG
CCGAGGGAAAAGATCACCCGCCTGCCGGCCTGCCTCCACACGTTTCACAG
GTGCGCGCTCGTTTTTCGTTGTTGGCGATGAGATGGTCGGTGAGACTGGT
GGGAGCCCTCTTGTCTTTGGGTTGCTGTTGTTGCAGGTGTACGGCGATTC
AACACATGGCTGGGCAATATAAACATGCAGAGCGGTCTAAAATTTAGTAT
GATAGTGCGATACACGGCATCGTCGGGCTGTGTCCCTTTTTTTGATTAAA
AAAATATGCATAACCTCACAGAAGATTACCTATTTCTCGAGCTGAATTCT
TCGAGCAGTCCGGACGCTGTTTCATGCGCATAGAAGGCCCTGTTTCTACA
TCTGTACCCCTTTTTTTGCTTGGATTTTTCCGTCGTTTTAGCCGTGGCCG
TCGCGCACCGCATCTATCCCTCTTTCATTGGCGCGGGAGTGAACTTACCA
CGAGTATTTCATCTCCCCTGACCCCCACCGCGCTCCCTCGTCGCCCGGAT
GGACCCTCGTGCCGCAGCAAGTGCATCTCGAAGTGGCTCAAAGAGAAGCC
CTGCTGCCCCATCGACAAAGTTGCTGTCAGCGTGAACGACTCCGGGTGAG
CTTCTCGTCGACCCCGCGAGCGAGCGGACAACAGCCGGCAGCTTCCTTCG
AACGAGTTGCCCTGTGGCGAACGCGCTCGCGCTCGCGTGTGTATGTTATT
TGGTGGTCGTCGCTGGGGCTGTTGTATATTTGGCCCTTGGTCCTTTGGCG
TGCCCCTCCTGCTCGACCCCACCTTTTGTCGGCGTGGACTGCTTTACATT
GCGAAGAATTAGGAACGAATGGAATCAAGGCAGCAGTCGGCTATTGTTTT
GCCCGCGGAGATGCGGCCCACCTGGACTGCAAGGCATTCACGTGAGCGGT
GATGCTGATGGGCGGGAGAATCTTTTACGGGGGGGTCGTGGATTTGTCGT
GTCCGCTGTGTGCCCTCGGAGCACCCTAGACGGACACGTGCGGGCTGGGG
CGAGAGGGAAGAGTTGCCGGGCTGGCGGGAGGGGTGTGGAGGGGAACGTG
GACGTAGTGAACGGACAGATATTTTTGTGAGGGCTCCTGCAGGCGTTTTG
CTCGCTCAGGAAGGCTAGCTGTATCTACCTGAGGCACCTGCATGTCCTGG
AGACACGTTGGTACGTTGGTACGCCCGAGAGTTTGTTGGACGTCTATCGG
TGCTGTTCATGGTGACTTTTGCCTTGCCGTTCTCAGGCAGACCGACTGCT
AAGGCTCTTGAATTGGCTTGGGTGCCCTGGGGGGGTCAAATTGTTGGCTT
CGCGGGTATTTGAGCGTGAGCAGGGGAAGGGCGGTGATCGTACATCGAGC
GCTCTCTCTCCCTCTCTCTTGCTCATTATGCCTATGTCTGCGCAGTCCTC
TCCACCCCCCAATCTCCGACCCGCGGGGTTGATGACATGTTGAAACTGCT
GCTGTTTCATTGCAGCCTCTGCCGGCGCTCGTCGCCGCTTTGTGAGGCAG
GGAGGCAGGGATACGAGCCCGTCGGCGTGAGTTTTCTCGTGTTTTTTGAG
GATTTTGCCTCTTTCGGTCGGTCACTCTTGGACGCACGGGTGTACTCCCC
GGAAGGTAAAAAGCATTCGGGCACACCCGGCATGAATGATTTTACGGGGC
CTCTTCATCTCGTGGGTGTTGGAGCAAGGCGAACGTTGGGGTGTGGCTGG
TTTTGGTTCCGGAGTCCACCTTCGCTTGCAAATCGATGCGTTCGTCTTGG
TTGGGGG
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Coding sequence (CDS) from alignment at chr_00:887583..889939-

>Ec-00_000650.1 ID=Ec-00_000650.1|Name=Ec-00_000650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=147bp|location=Sequence derived from alignment at chr_00:887583..889939- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGACATGAAGCCGAGGGAAAAGATCACCCGCCTGCCGGCCTGCCT
CCACACGTTTCACAGCAAGTGCATCTCGAAGTGGCTCAAAGAGAAGCCCT
GCTGCCCCATCGACAAAGTTGCTGTCAGCGTGAACGACTCCGGGTGA
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Synonyms
The feature 'Ec-00_000650.1' has the following synonyms
Synonym
Esi1151_0001
Esi_1151_0001