Ec-00_000560.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000560.1
Unique NameEc-00_000560.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length155
Homology
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BLAST of Ec-00_000560.1 vs. uniprot
Match: D7FHV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV4_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 7.150e-86
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:    1 MPPQHANDSADAXXXXXXXXXXXXXXXXXXXXXXXXXXYEGEEGGEQIQDGRFYEVVFETAQLGIVLLRQVAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRLG 462
            MPPQHANDSADAXXXXXXXXXXXXXXXXXXXXXXXXXXYEGEEGGEQIQDGRFYEVVFETAQLGIVLLRQVAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRLG
Sbjct:    1 MPPQHANDSADAXXXXXXXXXXXXXXXXXXXXXXXXXXYEGEEGGEQIQDGRFYEVVFETAQLGIVLLRQVAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRLG 154
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BLAST of Ec-00_000560.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 5.830e-63
Identity = 132/183 (72.13%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:    1 MPPQHANDSADAXXXXXXXXXXXXXXXXXXXXXXXXXXYEGEEGGEQIQDGRFYEVVFETAQLGIVLLRQ------------------------------VAGMPTSCLSYDGVVDRIRASPCPISLRFRRALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRL 459
            MPPQHANDSADAXXXXXXXXXXX                + EEGGEQIQDGRFYEVVFETAQLGIVLLRQ                              VAGMPTSCLSYDGVVDRIRASP PISLRFRRALF+SWWGREYTLDLS WDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRL
Sbjct: 3344 MPPQHANDSADAXXXXXXXXXXXLMGASALDLE------DEEEGGEQIQDGRFYEVVFETAQLGIVLLRQNGVAVVEEVSSYNGVGGRAAGPFPGDELTEVAGMPTSCLSYDGVVDRIRASPRPISLRFRRALFRSWWGREYTLDLSSWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRKRRL 3520
The following BLAST results are available for this feature:
BLAST of Ec-00_000560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHV4_ECTSI7.150e-86100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYL2_9PHAE5.830e-6372.13FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:756916..759389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length465
Hectar predicted targeting categoryother localisation
Gene idEc-00_000560.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000560Ec-00_000560Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 756916..759389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000560.1Ec-00_000560.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 756916..759389 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000560.1.1Ec-00_000560.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 756916..757062 +
Ec-00_000560.1.2Ec-00_000560.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 757605..757667 +
Ec-00_000560.1.3Ec-00_000560.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 758678..758766 +
Ec-00_000560.1.4Ec-00_000560.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 759091..759250 +
Ec-00_000560.1.5Ec-00_000560.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 759384..759389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000560.1CDS:Ec-00_000560.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 756916..757062 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000560.1 ID=Ec-00_000560.1|Name=Ec-00_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=155bp
MPPQHANDSADAAAAAAGAAAAALMGASALDLEDEEQEYEGEEGGEQIQD
GRFYEVVFETAQLGIVLLRQVAGMPTSCLSYDGVVDRIRASPCPISLRFR
RALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRK
RRLG*
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spliced messenger RNA

>Ec-00_000560.1 ID=Ec-00_000560.1|Name=Ec-00_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=465bp|location=Sequence derived from alignment at chr_00:756916..759389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGCAGCACGCGAACGACTCCGCCGACGCAGCGGCGGCGGCTGC
CGGCGCCGCGGCGGCGGCTCTGATGGGGGCCTCCGCTTTGGACTTGGAGG
ACGAGGAACAGGAATACGAGGGCGAAGAAGGGGGCGAACAGATTCAGGAC
GGGAGGTTCTACGAGGTGGTGTTCGAGACCGCCCAGCTGGGAATCGTCCT
TCTCAGACAGGTGGCGGGCATGCCGACGTCTTGCCTGTCGTACGACGGAG
TGGTGGACAGAATTCGCGCCAGCCCTTGCCCTATCAGCTTGAGGTTTCGC
CGAGCATTGTTCAAGAGCTGGTGGGGGCGAGAGTACACTTTGGACCTGTC
ATACTGGGACGGTCACCGCCTCGATGGTATCCTCCTGGTCGGCGGGGGGG
CGGGAGATCAAGCGGTCGTGGGCTCTGTCGACGGTTTCAGGCCTAGGAAA
CGGCGACTGGGATGA
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protein sequence of Ec-00_000560.1

>Ec-00_000560.1 ID=Ec-00_000560.1|Name=Ec-00_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=155bp
MPPQHANDSADAAAAAAGAAAAALMGASALDLEDEEQEYEGEEGGEQIQD
GRFYEVVFETAQLGIVLLRQVAGMPTSCLSYDGVVDRIRASPCPISLRFR
RALFKSWWGREYTLDLSYWDGHRLDGILLVGGGAGDQAVVGSVDGFRPRK
RRLG*
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mRNA from alignment at chr_00:756916..759389+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000560.1 ID=Ec-00_000560.1|Name=Ec-00_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2474bp|location=Sequence derived from alignment at chr_00:756916..759389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGCCGCAGCACGCGAACGACTCCGCCGACGCAGCGGCGGCGGCTGC
CGGCGCCGCGGCGGCGGCTCTGATGGGGGCCTCCGCTTTGGACTTGGAGG
ACGAGGAACAGGAATACGAGGGCGAAGAAGGGGGCGAACAGATTCAGGTG
GGATAACAAGATGTGATCGTGGTGCTCACTTGCTCTTCCACCGCCTTGAG
GCGCCAGCGGCAGGCCTTAGATGTTGGCAAAGGTCTTTACCTTCGTCTTG
CGCTTCTTGCTCCCACCCTTGGCATCCAACAGGCTGTTCTCCTGCACAAC
AGCAGTTGACTGTTGTTGTTGTAGCCTCTGCGCAGTACCTTGTCCGGTAG
CGTCCGTACGAGGAGCACCTTCTTCATCGCGATCCACACACGTTTGCACC
CCATGATTATTTAGTTTGGTTGTGCACGTGTTTCCTCGCTCCTCCCTTGC
TGTCAGCCGCATTCTACGTTTTTTCTTGCACGAGGGTGTGATACCTGCAA
CCGCATCATATGTCATCGCACACGCGTAAACATCCTCCCGTTATTTTTTT
TTTATCGCTTCAAACAAAATAAAATTGTACAACATTTTGTGGCCCCCGCC
CCGTGTGTTTCTCGCCTTTGAAGACGACCGTACAAACTCTGAGGTATTTG
CTGCGCGCGCATGTGTGTGTGTGTGTGTTTTTTTACTAGGACGGGAGGTT
CTACGAGGTGGTGTTCGAGACCGCCCAGCTGGGAATCGTCCTTCTCAGAC
AGGTGTGTCATCGAAAGATTCACTTCAACTAGAGCGGGGCAGAGAAGCGC
GTGAGGTTACAGTTCAACCAAAACGGGCCGCCGACCGTGTGCGAGACCAA
CGCCTGTGTGCGACGCCGGAATTGCTGTTAGGGTTGGGCTTTGATGCATG
CTTGGCTGTGGTGTACGGCACGCGCCACCGCTTGAGATAGATCCTGGTAG
TTCCGGGCTTGGAAGCTTGTAACGGTAAGAAATTGACCATAAGAGTAGGC
GTTGAGCTAAGAATCCTATCCGAAGACAACATCGCCCGGTTGGTGTCACC
ACAGAGGAATAAAAAAGCGAGCGAGCCTCGAGAGCAACACGAGGTTCTTT
AGTGGGGGGCGCGTCCCCGGCTCTGCATGGGTGCAAGGGCGGAGTTGCCA
ACAGTAAGGGTTACCTTCTGTGCGCCACCTACTGCTGTACCCTCCTCGTG
TCGCCACCCCAATCCCATCGTTGACGGTCTCTCTAACTTGATTCACGGGC
GCGAAATCAGGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGGGGCGGGCCCTTTCCCCGGCGAC
GAGCTGACGGAGGTGGCGGGCATGCCGACGTCTTGCCTGTCGTACGACGG
AGTGGTGGACAGAATTCGCGCCAGCCCTTGCCCTATCAGCTTGAGGTTTC
GGTGAGAAACTTTCAGTTTTTCCTTGCTCCCCCTAACGGGCATTACATAG
GTGTGTAATTGATGGCTCCCGGCACCTGTGAAAAGGGTATCAGACGCTGG
AGAAATGGAACCCTCGATGAAGAGCATGCCCACGTTACCCCCGTGTTTTT
TTTTTTTTTCTTGGCAGAAGAATTCTAAAAGGCAACCGCAATGAATGGTC
CTCCACGAAGAGGTTGGGGCCATTGCACCCTTTGTGGAGTTGATCTCCAC
TCACCCCCCCCGGTAGATCCGTCCAAAATCAAGCACTTTCCTCTCCACGC
CCGCCCCCCGTCTCTCTCTGTTAAGCCGAGCATTGTTCAAGAGCTGGTGG
GGGCGAGAGTACACTTTGGACCTGTCATACTGGGACGGTCACCGCCTCGA
TGGTATCCTCCTGGTCGGCGGGGGGGCGGGAGATCAAGCGGTCGTGGGCT
CTGTCGACGGTTTCAGGCCTAGGAAACGGCGACTGGTGAGAGTTTGGATT
GTTGGGTTGCGGCTGTCGTCGTTGTCGACCATGGCGATAAGACTTCTTCA
CGCTAAGGCGGAAGCCTTTCTTCTGTTTTTGCCGTTGACCATGGCGATGA
GATTTATTTACACCAAAGGGATGA
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Coding sequence (CDS) from alignment at chr_00:756916..759389+

>Ec-00_000560.1 ID=Ec-00_000560.1|Name=Ec-00_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=465bp|location=Sequence derived from alignment at chr_00:756916..759389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGCCGCAGCACGCGAACGACTCCGCCGACGCAGCGGCGGCGGCTGC
CGGCGCCGCGGCGGCGGCTCTGATGGGGGCCTCCGCTTTGGACTTGGAGG
ACGAGGAACAGGAATACGAGGGCGAAGAAGGGGGCGAACAGATTCAGGAC
GGGAGGTTCTACGAGGTGGTGTTCGAGACCGCCCAGCTGGGAATCGTCCT
TCTCAGACAGGTGGCGGGCATGCCGACGTCTTGCCTGTCGTACGACGGAG
TGGTGGACAGAATTCGCGCCAGCCCTTGCCCTATCAGCTTGAGGTTTCGC
CGAGCATTGTTCAAGAGCTGGTGGGGGCGAGAGTACACTTTGGACCTGTC
ATACTGGGACGGTCACCGCCTCGATGGTATCCTCCTGGTCGGCGGGGGGG
CGGGAGATCAAGCGGTCGTGGGCTCTGTCGACGGTTTCAGGCCTAGGAAA
CGGCGACTGGGATGA
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Synonyms
The feature 'Ec-00_000560.1' has the following synonyms
Synonym
Esi1125_0001
Esi_1125_0001