Ec-00_004060.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004060.2
Unique NameEc-00_004060.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length138
Homology
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BLAST of Ec-00_004060.2 vs. uniprot
Match: A0A6H5KHW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.610e-21
Identity = 63/103 (61.17%), Postives = 70/103 (67.96%), Query Frame = 3 
Query:  210 LRPAWSALSIWAALLVALAVALPAAPVGIPASTLAPVSRVQQSTLALYAGMEDG-------AADIDPHEPSDDGDSDDEFDLVPKSRARYAANSHNAGLNTRG 497
            LR AWSAL +WA LLVALAVALPAAPVG+P  T   VS VQQSTLAL+AG ED         + +DP E SDD D D EFD+ P  +  YAANSH  GLN RG
Sbjct:    3 LRAAWSALFVWATLLVALAVALPAAPVGVPPCTSVYVSLVQQSTLALHAGTEDSELGMEGSGSYVDPKEASDDEDDDAEFDMGPSYKPLYAANSHR-GLNMRG 104
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BLAST of Ec-00_004060.2 vs. uniprot
Match: D7FWX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.330e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   56 ATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 193
            ATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM
Sbjct:   20 ATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 65
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BLAST of Ec-00_004060.2 vs. uniprot
Match: A0A6H5L207_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L207_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.740e-18
Identity = 65/108 (60.19%), Postives = 70/108 (64.81%), Query Frame = 3 
Query:  198 MGRHLRPAWSALSIWAALLVALAVALPAAPVGIPASTLA-PVSRVQQSTLALYA-------GMEDGAADIDPHEPSDDGDSDDEFDLVPKSRARYAANSHNAGLNTRG 497
            M R  R AWS+LSIWAALLVALAVALPAAPV IPA T A  VS  Q ST A+ A       GMED  + IDP  PSDD D D EFD+    +  YAANS  AG NTRG
Sbjct:    1 MRRPPRNAWSSLSIWAALLVALAVALPAAPVAIPARTWALAVSLRQPSTYAMNAATEDSELGMEDSGSAIDPSVPSDDED-DCEFDMGASYKPMYAANSLQAGYNTRG 107
[Close]
BLAST of Ec-00_004060.2 vs. uniprot
Match: D7FUP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.040e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   56 ATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 193
            ATSKQAVASSIPEAADAMLDAM+VMEWCPALRSTVLCRLAKDEGLM
Sbjct:   89 ATSKQAVASSIPEAADAMLDAMHVMEWCPALRSTVLCRLAKDEGLM 134
[Close]
BLAST of Ec-00_004060.2 vs. uniprot
Match: A0A6H5K756_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K756_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.780e-15
Identity = 61/108 (56.48%), Postives = 65/108 (60.19%), Query Frame = 3 
Query:  198 MGRHLRPAWSALSIWAALLVALAVALPAAPVGIPASTLA--------PVSRVQQSTLALYAGMEDGAADIDPHEPSDDGDSDDEFDLVPKSRARYAANSHNAGLNTRG 497
            M R  RPAW ALSIWAALLVALAVALPAAPV IPA T A        P   V  +T     GMED    IDP   +DD D D EFD+    +  YAANSH AG NTRG
Sbjct:    1 MRRPPRPAWFALSIWAALLVALAVALPAAPVAIPARTSALAVSLRQPPPPAVNAATEDSELGMEDSGYAIDPSVLTDDED-DCEFDMGASYKPIYAANSHKAGHNTRG 107
[Close]
BLAST of Ec-00_004060.2 vs. uniprot
Match: A0A6H5JVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVU7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.000e-14
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = -3 
Query:  194 MSAAPSSMPAYKASVDCCTRETGANVEAGMPTGAAGSATASATNNAAQIDRADHAGRRCLPMT 382
            MSA  SSMPAYKASVDC           GMPTGAAGSATA ATN+AA +D+ADHAGRRCLPM+
Sbjct:    1 MSAPLSSMPAYKASVDCX----------GMPTGAAGSATARATNHAAPLDKADHAGRRCLPMS 53
[Close]
BLAST of Ec-00_004060.2 vs. uniprot
Match: A0A6H5KRS1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.230e-6
Identity = 59/137 (43.07%), Postives = 67/137 (48.91%), Query Frame = -1 
Query:  199 SRVAVRAGGVTGDAGVGCCCRCC*WCRAAPSC*D---------QRCASLQHTALGTWGLDQTRRLNPHHR*AHVGRCQPRRPPCQRTKRVWTAARGRRAPM*KQECQLALLVVQPQALPTTPPR*TGQTTRGVDASP 582
            SR  VR+GGVTGDA V     C    RAAP             QR     H  LG   L  T  +    R A +           +TK V  A R RR+ M K+E QLAL   Q QA+PTTPPR TGQTTR V+ASP
Sbjct:   34 SRETVRSGGVTGDAVVDXXXXCR---RAAPRVLRPELCEFAAIQRFVRWAHIKLGIVILIITSLIWVDIRTAVLHAKLAVLSASVQTKGV--AGRARRSLMYKEEHQLALPATQLQAIPTTPPRQTGQTTRRVEASP 165
[Close]
BLAST of Ec-00_004060.2 vs. uniprot
Match: A0A6H5L3F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.480e-6
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:  107 MLDAMNVMEWCPALRSTVLCRLAKDEGLM 193
            MLDAM+VMEWCPALRS VLCRLAK +G+M
Sbjct:    1 MLDAMHVMEWCPALRSAVLCRLAKAKGVM 29
The following BLAST results are available for this feature:
BLAST of Ec-00_004060.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KHW0_9PHAE7.610e-2161.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWX0_ECTSI4.330e-20100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L207_9PHAE9.740e-1860.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUP5_ECTSI1.040e-1797.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K756_9PHAE2.780e-1556.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVU7_9PHAE5.000e-1469.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS1_9PHAE3.230e-643.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L3F5_9PHAE3.480e-682.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5034697..5037871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length802
Hectar predicted targeting categorysignal peptide
Gene idEc-00_004060.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004060Ec-00_004060Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5034697..5037876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004060.2Ec-00_004060.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5037270..5037683 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004060.2.1Ec-00_004060.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5034697..5034753 +
Ec-00_004060.2.2Ec-00_004060.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5036714..5036851 +
Ec-00_004060.2.3Ec-00_004060.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5037265..5037871 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0040605UTR:Ec-00_004060.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 5034697..5034753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004060.2CDS:Ec-00_004060.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5037270..5037683 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0040603UTR:Ec-00_004060.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 5037684..5037871 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004060.2 ID=Ec-00_004060.2|Name=Ec-00_004060.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=138bp
MGRHLRPAWSALSIWAALLVALAVALPAAPVGIPASTLAPVSRVQQSTLA
LYAGMEDGAADIDPHEPSDDGDSDDEFDLVPKSRARYAANSHNAGLNTRG
QLGTINNSGSSTPPQHHRSRRRLGRPRVSGDNRCICG*
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spliced messenger RNA

>Ec-00_004060.2 ID=Ec-00_004060.2|Name=Ec-00_004060.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=802bp|location=Sequence derived from alignment at chr_00:5034697..5037871+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGGAGGACGAGAACGTCGACCCCCGACAGGCCGTCGCGGATCT
AGTGGAGGCGACGTCAAAGCAAGCAGTTGCCTCTTCTATCCCTGAGGCCG
CCGACGCCATGTTGGACGCCATGAACGTCATGGAGTGGTGCCCGGCGCTA
CGTTCGACAGTGCTTTGCCGCCTGGCCAAAGACGAAGGCCTGATGAGGTC
ATGGGGAGGCATCTACGCCCCGCGTGGTCTGCCCTGTCTATCTGGGCGGC
GTTGTTGGTAGCGCTTGCGGTTGCACTACCAGCAGCGCCAGTTGGCATTC
CTGCTTCTACATTGGCGCCCGTCTCCCGCGTGCAGCAGTCCACACTCGCT
TTGTACGCTGGCATGGAGGACGGCGCGGCTGACATCGACCCACATGAGCC
TAGCGATGATGGGGATTCAGACGACGAGTTTGATCTAGTCCCCAAGTCCC
GAGCGCGGTATGCTGCAAACTCGCACAACGCTGGTCTCAACACGAGGGGG
CAGCTCGGCACCATCAACAACAGCGGCAGCAGCACCCCACCCCAGCATCA
CCGGTCACGCCGCCGGCTCGGACGGCCACGCGTGAGCGGCGACAACCGAT
GCATCTGCGGATAGCGGAGTCGAAGCGGCAAGCGCGGGAGGCAGCAGAGC
GGGGGCAGCAGCAGTGGGAGCAGCAGCAGTGGGAGCAGCAGCAGCAACCA
TCACCGGAGCCTGCTCCAGCCAACAGCTCAAACTCGCAACAACAACAGAC
CCCGGCACGACCGTTGACGGAGCTGCTCCGGACAACGTCGCGTGAGCCGC
AA
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protein sequence of Ec-00_004060.2

>Ec-00_004060.2 ID=Ec-00_004060.2|Name=Ec-00_004060.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=138bp
MGRHLRPAWSALSIWAALLVALAVALPAAPVGIPASTLAPVSRVQQSTLA
LYAGMEDGAADIDPHEPSDDGDSDDEFDLVPKSRARYAANSHNAGLNTRG
QLGTINNSGSSTPPQHHRSRRRLGRPRVSGDNRCICG*
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mRNA from alignment at chr_00:5034697..5037871+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004060.2 ID=Ec-00_004060.2|Name=Ec-00_004060.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3175bp|location=Sequence derived from alignment at chr_00:5034697..5037871+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAGAGGAGGACGAGAACGTCGACCCCCGACAGGCCGTCGCGGATCT
AGTGGAGGTGAGAACTCGGGCGTTAGAGCACACATCTCGCACACAGTCTC
CGATTACTGTACAATAGTTCTAGTCAAGTGCATGTCGTGCTCTTGTCCCA
GTATCATGCGTGGCTCGCTGCAGGCCACACGCTGAACTGTTCATCAGCCA
GGGCTGAAGTCTGAAACCCCGACGTTCTCCTGCTGCTATATCCCACCGAT
CTCCCTATCCATGTAGCATGATGTGCGACTGCCGGCCTTTCCCGTGTTCC
TTCTCCGATCTCAATCGCTAGCATCTGCGCCTCCTGTCCACACAACCCTT
GTTGGAAACAAATTCGAGAGACTCCATCTTCTTAAAAGCAACAATTAAAA
TTCCAATGTAGCGGCGGTTGTAGCAGTAGAAGTCAATAACTCAAGTCTAC
GTACAGTACAACATCCCGGAGAATTTTAGAATTTTGATTCGTGTGCTGTG
ACACCCGTTTGCTTTGTTGTCCCCTGTTTGCCGGCGTTGACACACGCGCG
CGGGGGGGGGGAGGTGCAAGCACGGCTCTACATTTTCGTCGCCGAAACTT
ATCTCCTCTCCGTATTTCTTACCGCACAAGCCTCTGCTCCGTGACACTCC
AGTCCTCACGAGATCAACAGGACCACTTCGACCCTAGTTGCAGTACACAA
CCTACAAGTACCTGGTTGTTGGTTTGCTGTTGCATGGCGTATCAGCCACA
CATTCCATTCTAGACTACACCTACAACGCATTCTCAAGAGCCTCGTTCCT
GTTGCTCTTCTGCGTGGGCTATGACCTTCAAGCAGCCGGCCTTTCGCCCT
TTCGCCTCGACGACGTTTCCACCTCGTCTCATCCTTTTATCTTCTCCCTC
GTATGCATAGTACTATGAATACCGTGTGAGCTGAGGTAAATACCCTCAAC
TCTGTGTGAGCTGAGTTCCCAGTATGGCGAGGTGGAATATGCCTACCACC
GGAGGCAGCCTAGTTTCCTCTGTTGAGATGTGACGAGGAATGTCAAGCGG
TGACCGAGCGTGCTCGGTCAAGGCTAGGGTAAGGTTGCGAGTAGGCGTTG
GCCGAGACCCTTCTTGGCTCTCGGTACCAACCGTAAAGATCCACCACGAC
TCCTGTCGGAGCAAAGAATGGAGTACAGTAGTAAATGACCCAAAAGCAGA
GCGATGAGTTATCGTCTGTCGAAGGTTCTTTACTCCCTTCGTATGTGTGT
GTGTAAGTTATAAGAAGATACGAATATAAGAAGAAACGAATATCCTGGCT
TCCACAGTACTGATGTAAGCCCAAATGGATACTCTCTGGGGACACGGCTC
TCAAATTGCCTGTGTGCCGCGCCGTGGTCGTCACCATGCTCCGCTGCGTG
AAATGTATGTCGGAAACCTTTGCCTAATGTGCATAGCATGTTTGTGGAGG
CGATACGCTGTGTCGGTACTGCTTTGTAATACCTGTGTGTTGTGGGCCTC
TCCTGGGGCCCTCTGACTTGTTGTACACAGATCCGAAAGCCGCGGGTCCC
CTTATTCGTAAAACTGCTCCTGTGCATACTTTGTACACATAGCATGCAGC
AGTAGTACTGCTAAAATCTGGCTGACTGGCTTCAGCAACACTTTCCACAC
TGGAGCCAAGTCAGGACTGTACAGAATCTCCCCAGTGATGGGACGCGATT
TATTGATGACCCATGACCTGGCACTGACTGCCTACTACGAGGGTTTATCT
TAACCCTTCTGGTACACAGAAGGCTTTTTTATGGCACGTTCCCTCCTCGA
CCGCTGCGACACTTGAGACCGCTTTATGTCTCTCGCCCGCCCCCCCCTTC
GAGCTGGACGGGAAAGGTATGGCCTATAATATCAAACTAGCAGACTCCGC
GGTTTACTTCGTGCGTGTGACGCAGGTCACACGGCCTCCCTTCCTTCATC
CACAGCACACGATCTAACATCCACGTGCCTGCCCCGATGTGTCTGCTTGT
TGTCGAAATTGCGGAAGGCGACGTCAAAGCAAGCAGTTGCCTCTTCTATC
CCTGAGGCCGCCGACGCCATGTTGGACGCCATGAACGTCATGGAGTGGTG
CCCGGCGCTACGTTCGACAGTGCTTTGCCGCCTGGCCAAAGACGAAGGCC
TGATGGTGAGAGACAACACGTCAAGGCTTTCAACCAATCCGAAGCGTTTG
ACGGAGGAACGAGCCACAATCAATTTGCGGTCCTGACGTGTATATCTCTA
AGTGGTCGGACGAGGGTGTTCTCGAACGTAGATGTCGGATACGAAAGCCA
CCCGCACGTGGGCGCCGGGAATTTATTTCGAAACCTTCTATCGAATCGCC
GTTAACCCTTTGGAGTCTTCGGCCGGTCTGAGAGATCATTGATTGATCAT
TTTATCCATTTTTTTTTTTTTATCGGGCTGAACAGACGGTCTAGTCGTGT
AGGGGAGGATAGGAAAAAAACCCGAACCCGCACGCAGAGGAGTTGTACAG
CACAGCATGCTAAAAGCGAGGGCACGCCACACACACGCCACGCACAAACC
ACGAAAGGATGCGCCGAGAGGTCATGGGGAGGCATCTACGCCCCGCGTGG
TCTGCCCTGTCTATCTGGGCGGCGTTGTTGGTAGCGCTTGCGGTTGCACT
ACCAGCAGCGCCAGTTGGCATTCCTGCTTCTACATTGGCGCCCGTCTCCC
GCGTGCAGCAGTCCACACTCGCTTTGTACGCTGGCATGGAGGACGGCGCG
GCTGACATCGACCCACATGAGCCTAGCGATGATGGGGATTCAGACGACGA
GTTTGATCTAGTCCCCAAGTCCCGAGCGCGGTATGCTGCAAACTCGCACA
ACGCTGGTCTCAACACGAGGGGGCAGCTCGGCACCATCAACAACAGCGGC
AGCAGCACCCCACCCCAGCATCACCGGTCACGCCGCCGGCTCGGACGGCC
ACGCGTGAGCGGCGACAACCGATGCATCTGCGGATAGCGGAGTCGAAGCG
GCAAGCGCGGGAGGCAGCAGAGCGGGGGCAGCAGCAGTGGGAGCAGCAGC
AGTGGGAGCAGCAGCAGCAACCATCACCGGAGCCTGCTCCAGCCAACAGC
TCAAACTCGCAACAACAACAGACCCCGGCACGACCGTTGACGGAGCTGCT
CCGGACAACGTCGCGTGAGCCGCAA
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Coding sequence (CDS) from alignment at chr_00:5034697..5037871+

>Ec-00_004060.2 ID=Ec-00_004060.2|Name=Ec-00_004060.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=414bp|location=Sequence derived from alignment at chr_00:5034697..5037871+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGAGGCATCTACGCCCCGCGTGGTCTGCCCTGTCTATCTGGGCGGC
GTTGTTGGTAGCGCTTGCGGTTGCACTACCAGCAGCGCCAGTTGGCATTC
CTGCTTCTACATTGGCGCCCGTCTCCCGCGTGCAGCAGTCCACACTCGCT
TTGTACGCTGGCATGGAGGACGGCGCGGCTGACATCGACCCACATGAGCC
TAGCGATGATGGGGATTCAGACGACGAGTTTGATCTAGTCCCCAAGTCCC
GAGCGCGGTATGCTGCAAACTCGCACAACGCTGGTCTCAACACGAGGGGG
CAGCTCGGCACCATCAACAACAGCGGCAGCAGCACCCCACCCCAGCATCA
CCGGTCACGCCGCCGGCTCGGACGGCCACGCGTGAGCGGCGACAACCGAT
GCATCTGCGGATAG
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Synonyms
The feature 'Ec-00_004060.2' has the following synonyms
Synonym
Esi0316_0036
Esi_0316_0036