Ec-28_003430.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ec-28_003430.1
Unique Name	Ec-28_003430.1
Type	polypeptide
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	119

Homology

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BLAST of Ec-28_003430.1 vs. uniprot
Match: A0A6H5JTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTD4_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.770e-60
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 0

Query:    6 VALAMARQLSQQLDGQRETLERRATTAEALRDVSRQKCSDCLENHMGRNQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRAALALGIPCTLVMAAICSKHMPRPNVKRRSD 118
            VALAMARQLSQQLD QRETLE RATTAEALRD SRQKCS+CLE+H  R+QAAEVPARLAGLVGGSLSAWLFCVALGLTWAPR ALALGIPCTLVMAA+CSK MP P+VKRRSD
Sbjct:   29 VALAMARQLSQQLDSQRETLEGRATTAEALRDFSRQKCSECLESHTRRDQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRVALALGIPCTLVMAALCSKRMPWPSVKRRSD 141

The following BLAST results are available for this feature:

BLAST of Ec-28_003430.1 vs. uniprot

BLAST of Ec-28_003430.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JTD4_9PHAE	1.770e-60	88.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..28
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 88..105
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 63..82
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..62
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 106..118
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 83..87
None	No IPR available	TMHMM	TMhelix		coord: 63..85
None	No IPR available	TMHMM	TMhelix		coord: 89..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_28	contig	chr_28:3251308..3252895 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-28_003430.1	Ec-28_003430.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	mRNA	chr_28 3251308..3252895 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ec-28_003430.1 ID=Ec-28_003430.1|Name=Ec-28_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=119bp
MPVSQVALAMARQLSQQLDGQRETLERRATTAEALRDVSRQKCSDCLENH
MGRNQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRAALALGIPCTLVM
AAICSKHMPRPNVKRRSD*