Ec-00_003460.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003460.1
Unique NameEc-00_003460.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length277
Homology
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BLAST of Ec-00_003460.1 vs. uniprot
Match: D7FRQ6_ECTSI (Putative methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ6_ECTSI)

HSP 1 Score: 514 bits (1323), Expect = 1.050e-181
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 
Query:    1 MHQHNSSTRQAGAEQGRNDRVDARRAHGSSGEKNRPPLQKKGNRDNRLREPLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTEGEGDSAADEGGLGDLESKRTSSGGKDGAGEVSGTDAAVASAAVSTKLSATESDDSAETTGGDVSFGIGRALIGDESRAEVPATVAAAAVSYAASARAGPLTFVPAVPAATNFEAKYVAVGETVYELRLEPKLS 828
            MHQHNSSTRQAGAEQGRNDRVDARRAHGSSGEKNRPPLQKKGNRDNRLREPLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTEGEGDSAADEGGLGDLESKRTSSGGKDGAGEVSGTDAAVASAAVSTKLSATESDDSAETTGGDVSFGIGRALIGDESRAEVPATVAAAAVSYAASARAGPLTFVPAVPAATNFEAKYVAVGETVYELRLEPKLS
Sbjct:  116 MHQHNSSTRQAGAEQGRNDRVDARRAHGSSGEKNRPPLQKKGNRDNRLREPLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTEGEGDSAADEGGLGDLESKRTSSGGKDGAGEVSGTDAAVASAAVSTKLSATESDDSAETTGGDVSFGIGRALIGDESRAEVPATVAAAAVSYAASARAGPLTFVPAVPAATNFEAKYVAVGETVYELRLEPKLS 391
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BLAST of Ec-00_003460.1 vs. uniprot
Match: A0A7X4FWY8_9GAMM (SAM-dependent methyltransferase n=2 Tax=Halomonas TaxID=2745 RepID=A0A7X4FWY8_9GAMM)

HSP 1 Score: 115 bits (289), Expect = 9.650e-28
Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  154 LPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTE 429
            LP+N LL+RADLVD W LA+R   W  + HY+LYPNPYPK + L  RWHGH VFP LL+LGG + LRSNW+ YL+E  +AV+   G     E
Sbjct:   98 LPDNALLVRADLVDFWRLAARAG-WSPERHYLLYPNPYPKAAHLNRRWHGHPVFPALLALGGRLELRSNWQIYLEEFAEAVVQATGKQPVVE 188
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BLAST of Ec-00_003460.1 vs. uniprot
Match: A0A2D9LKZ3_HALSX (SAM-dependent methyltransferase n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A2D9LKZ3_HALSX)

HSP 1 Score: 115 bits (288), Expect = 1.350e-27
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:  154 LPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAING 411
            LP N LL+RADLVD W LA  E  W+ + HY+LYPNPYPK + L+ RWHGH VFP LL+LGG + LRSNW+ Y++E  QAV  + G
Sbjct:   98 LPNNALLVRADLVDFWRLAL-EAGWKPERHYLLYPNPYPKAAHLKMRWHGHPVFPTLLALGGQLELRSNWQLYVEEFAQAVAVVTG 182
[Close]
BLAST of Ec-00_003460.1 vs. uniprot
Match: A0A7X4W3G5_9GAMM (SAM-dependent methyltransferase n=2 Tax=Halomonas TaxID=2745 RepID=A0A7X4W3G5_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 1.820e-27
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:  151 PLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTE 429
            PLP+N LL+RADLVD W LA R   W    HY+LYPNPYPK S L+ RWHGH V P +L+LGG + LRSNWR YL+E C A+    G     E
Sbjct:   98 PLPDNALLVRADLVDFWRLAFRAG-WRPARHYLLYPNPYPKASLLKLRWHGHPVLPFILALGGRLELRSNWRLYLEEFCLALQQATGVEAAVE 189
[Close]
BLAST of Ec-00_003460.1 vs. uniprot
Match: UPI00100A59A6 (SAM-dependent methyltransferase n=2 Tax=Halomonadaceae TaxID=28256 RepID=UPI00100A59A6)

HSP 1 Score: 115 bits (287), Expect = 2.260e-27
Identity = 54/88 (61.36%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:  154 LPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAA 417
            LP+N LL+RADLVD W LA  E  W    HY+LYPNPYPK SQL+ RWHGHSVFP LL+LGG + LRSNWR Y++E   A      AA
Sbjct:   98 LPDNALLVRADLVDFWRLALAEG-WRPSHHYLLYPNPYPKASQLKLRWHGHSVFPTLLALGGRLELRSNWRVYVEEFALATAEAGLAA 184
[Close]
BLAST of Ec-00_003460.1 vs. uniprot
Match: A0A455V103_9GAMM (Uncharacterized protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455V103_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 2.400e-27
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:  154 LPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAING 411
            LPEN LL+RADLVD W LA  E  W  + HY+LYPNPYPK + L+ RWHGH VFP LL+L G + LRSNW+ Y++E  QAV  + G
Sbjct:   18 LPENALLVRADLVDFWRLAL-EAGWTPERHYLLYPNPYPKSAHLKMRWHGHPVFPTLLALRGRLELRSNWQLYVEEFAQAVEVVTG 102
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BLAST of Ec-00_003460.1 vs. uniprot
Match: UPI0016687AED (SAM-dependent methyltransferase n=1 Tax=Halomonas lutescens TaxID=1602943 RepID=UPI0016687AED)

HSP 1 Score: 114 bits (286), Expect = 2.660e-27
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:  154 LPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAING 411
            LP+N LL+RADLVD W LA  E  W  + HY+LYPNPYPK + L+ RWHGH VFP LL+LGG + LRSNWR Y++E  QAV    G
Sbjct:   98 LPQNALLVRADLVDFWRLAL-EVGWAPERHYLLYPNPYPKAAHLKMRWHGHPVFPTLLALGGRLELRSNWRLYVEEFAQAVAVATG 182
[Close]
BLAST of Ec-00_003460.1 vs. uniprot
Match: A0A2V1GTV7_9GAMM (SAM-dependent methyltransferase n=2 Tax=Pelagibaculum spongiae TaxID=2080658 RepID=A0A2V1GTV7_9GAMM)

HSP 1 Score: 114 bits (285), Expect = 2.910e-27
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  112 LQKKGNRDNRLREPLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAI 405
            + +  +R  R +E LPEN+LL+RADL+D W LA + N W++++HY+LYPNP+PK+  L  RWHGH+V P ++SLG  I  RSNW  Y++E  Q+V ++
Sbjct:   65 VDQSADRLEREKEQLPENMLLVRADLIDFWRLAVQAN-WDVEQHYLLYPNPWPKKKHLPRRWHGHAVLPYIISLGSTIECRSNWPVYIEEFAQSVQSL 161
[Close]
BLAST of Ec-00_003460.1 vs. uniprot
Match: UPI001EF40EA4 (SAM-dependent methyltransferase n=1 Tax=unclassified Halomonas TaxID=2609666 RepID=UPI001EF40EA4)

HSP 1 Score: 114 bits (285), Expect = 3.740e-27
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:  154 LPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAA 417
            LP+N LL+RADLVD W LA  E  W  + HY+LYPNPYPK + L+ RWHGH VFP LL+LGG + LRSNW+ Y++E  QAV  + G A
Sbjct:   98 LPDNALLVRADLVDFWRLAL-EADWAPERHYLLYPNPYPKSAHLKMRWHGHPVFPTLLALGGRLELRSNWQLYVEEFAQAVNIVTGQA 184
[Close]
BLAST of Ec-00_003460.1 vs. uniprot
Match: A0A369KSM0_9GAMM (SAM-dependent methyltransferase n=1 Tax=Halomonas sp. DQ26W TaxID=2282311 RepID=A0A369KSM0_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 3.740e-27
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:  154 LPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTE 429
            LP+N LL+RADLVD W LA +   W+   HY+LYPNPYPK + L++RWHGH++FPV+L+LGG + LRSNWR Y++E   A+  + GA    E
Sbjct:  100 LPDNALLVRADLVDFWRLALQAG-WQPVRHYLLYPNPYPKSAHLKTRWHGHAIFPVILALGGRLELRSNWRLYVEEFALALEQVTGAKALVE 190
The following BLAST results are available for this feature:
BLAST of Ec-00_003460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ6_ECTSI1.050e-181100.00Putative methyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A7X4FWY8_9GAMM9.650e-2856.52SAM-dependent methyltransferase n=2 Tax=Halomonas ... [more]
A0A2D9LKZ3_HALSX1.350e-2759.30SAM-dependent methyltransferase n=1 Tax=Halomonas ... [more]
A0A7X4W3G5_9GAMM1.820e-2756.99SAM-dependent methyltransferase n=2 Tax=Halomonas ... [more]
UPI00100A59A62.260e-2761.36SAM-dependent methyltransferase n=2 Tax=Halomonada... [more]
A0A455V103_9GAMM2.400e-2759.30Uncharacterized protein n=1 Tax=Halomonas axialens... [more]
UPI0016687AED2.660e-2760.47SAM-dependent methyltransferase n=1 Tax=Halomonas ... [more]
A0A2V1GTV7_9GAMM2.910e-2748.98SAM-dependent methyltransferase n=2 Tax=Pelagibacu... [more]
UPI001EF40EA43.740e-2759.09SAM-dependent methyltransferase n=1 Tax=unclassifi... [more]
A0A369KSM0_9GAMM3.740e-2754.35SAM-dependent methyltransferase n=1 Tax=Halomonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3453513..3454343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score520.0
Seed ortholog evalue6.8e-145
Seed eggNOG ortholog2880.D7FRQ6
Length831
Hectar predicted targeting categoryother localisation
Gene idEc-00_003460.1
EggNOG OGs2DK0Q@1,2S61T@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003460Ec-00_003460Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3453488..3455339 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003460.1.1Ec-00_003460.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3453513..3454343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003460.1CDS:Ec-00_003460.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3453513..3454343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003460.1Ec-00_003460.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3453513..3454343 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003460.1 ID=Ec-00_003460.1|Name=Ec-00_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=277bp
MHQHNSSTRQAGAEQGRNDRVDARRAHGSSGEKNRPPLQKKGNRDNRLRE
PLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWH
GHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTEGEGDSAA
DEGGLGDLESKRTSSGGKDGAGEVSGTDAAVASAAVSTKLSATESDDSAE
TTGGDVSFGIGRALIGDESRAEVPATVAAAAVSYAASARAGPLTFVPAVP
AATNFEAKYVAVGETVYELRLEPKLS*
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spliced messenger RNA

>Ec-00_003460.1 ID=Ec-00_003460.1|Name=Ec-00_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=831bp|location=Sequence derived from alignment at chr_00:3453513..3454343+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCAACACAACAGCTCTACAAGACAAGCAGGCGCGGAGCAGGGCAG
AAACGACCGCGTTGACGCACGAAGAGCTCACGGTAGCTCAGGCGAGAAGA
ACCGCCCCCCTTTGCAGAAGAAAGGCAACCGTGACAATCGACTTAGGGAG
CCTCTTCCGGAAAACCTTCTACTGCTGCGCGCGGACCTTGTGGACCTGTG
GATACTGGCATCGAGGGAAAACGCTTGGGAAATCAAAGAACACTACATCC
TTTACCCCAATCCGTACCCGAAGCGCTCCCAGCTACGATCACGGTGGCAC
GGTCACTCTGTTTTCCCGGTCCTACTCAGCCTTGGTGGGGTGATAACGCT
ACGCTCCAACTGGAGGACGTATCTGGACGAGGTCTGCCAGGCAGTGCTGG
CCATCAATGGTGCAGCGCAGACGACGGAGGGCGAGGGAGACTCGGCTGCC
GATGAAGGCGGGCTTGGGGATCTGGAGTCAAAGAGGACGAGCAGCGGGGG
CAAAGACGGTGCCGGAGAAGTATCTGGGACGGATGCAGCTGTCGCATCAG
CAGCCGTGTCCACGAAGCTATCGGCGACCGAAAGCGACGACAGCGCAGAA
ACAACCGGTGGGGACGTGAGTTTTGGCATCGGTCGAGCTTTGATTGGCGA
TGAAAGTAGAGCCGAAGTTCCGGCTACCGTCGCTGCCGCAGCCGTCTCTT
ACGCGGCTAGCGCAAGGGCGGGCCCCTTGACCTTTGTTCCAGCAGTGCCT
GCTGCAACAAACTTCGAGGCAAAGTATGTTGCAGTCGGTGAGACGGTGTA
CGAGCTTCGGCTAGAGCCGAAACTATCGTAG
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protein sequence of Ec-00_003460.1

>Ec-00_003460.1 ID=Ec-00_003460.1|Name=Ec-00_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=277bp
MHQHNSSTRQAGAEQGRNDRVDARRAHGSSGEKNRPPLQKKGNRDNRLRE
PLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWH
GHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTEGEGDSAA
DEGGLGDLESKRTSSGGKDGAGEVSGTDAAVASAAVSTKLSATESDDSAE
TTGGDVSFGIGRALIGDESRAEVPATVAAAAVSYAASARAGPLTFVPAVP
AATNFEAKYVAVGETVYELRLEPKLS*
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mRNA from alignment at chr_00:3453513..3454343+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003460.1 ID=Ec-00_003460.1|Name=Ec-00_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=831bp|location=Sequence derived from alignment at chr_00:3453513..3454343+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATCAACACAACAGCTCTACAAGACAAGCAGGCGCGGAGCAGGGCAG
AAACGACCGCGTTGACGCACGAAGAGCTCACGGTAGCTCAGGCGAGAAGA
ACCGCCCCCCTTTGCAGAAGAAAGGCAACCGTGACAATCGACTTAGGGAG
CCTCTTCCGGAAAACCTTCTACTGCTGCGCGCGGACCTTGTGGACCTGTG
GATACTGGCATCGAGGGAAAACGCTTGGGAAATCAAAGAACACTACATCC
TTTACCCCAATCCGTACCCGAAGCGCTCCCAGCTACGATCACGGTGGCAC
GGTCACTCTGTTTTCCCGGTCCTACTCAGCCTTGGTGGGGTGATAACGCT
ACGCTCCAACTGGAGGACGTATCTGGACGAGGTCTGCCAGGCAGTGCTGG
CCATCAATGGTGCAGCGCAGACGACGGAGGGCGAGGGAGACTCGGCTGCC
GATGAAGGCGGGCTTGGGGATCTGGAGTCAAAGAGGACGAGCAGCGGGGG
CAAAGACGGTGCCGGAGAAGTATCTGGGACGGATGCAGCTGTCGCATCAG
CAGCCGTGTCCACGAAGCTATCGGCGACCGAAAGCGACGACAGCGCAGAA
ACAACCGGTGGGGACGTGAGTTTTGGCATCGGTCGAGCTTTGATTGGCGA
TGAAAGTAGAGCCGAAGTTCCGGCTACCGTCGCTGCCGCAGCCGTCTCTT
ACGCGGCTAGCGCAAGGGCGGGCCCCTTGACCTTTGTTCCAGCAGTGCCT
GCTGCAACAAACTTCGAGGCAAAGTATGTTGCAGTCGGTGAGACGGTGTA
CGAGCTTCGGCTAGAGCCGAAACTATCGTAG
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Coding sequence (CDS) from alignment at chr_00:3453513..3454343+

>Ec-00_003460.1 ID=Ec-00_003460.1|Name=Ec-00_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=831bp|location=Sequence derived from alignment at chr_00:3453513..3454343+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATCAACACAACAGCTCTACAAGACAAGCAGGCGCGGAGCAGGGCAG
AAACGACCGCGTTGACGCACGAAGAGCTCACGGTAGCTCAGGCGAGAAGA
ACCGCCCCCCTTTGCAGAAGAAAGGCAACCGTGACAATCGACTTAGGGAG
CCTCTTCCGGAAAACCTTCTACTGCTGCGCGCGGACCTTGTGGACCTGTG
GATACTGGCATCGAGGGAAAACGCTTGGGAAATCAAAGAACACTACATCC
TTTACCCCAATCCGTACCCGAAGCGCTCCCAGCTACGATCACGGTGGCAC
GGTCACTCTGTTTTCCCGGTCCTACTCAGCCTTGGTGGGGTGATAACGCT
ACGCTCCAACTGGAGGACGTATCTGGACGAGGTCTGCCAGGCAGTGCTGG
CCATCAATGGTGCAGCGCAGACGACGGAGGGCGAGGGAGACTCGGCTGCC
GATGAAGGCGGGCTTGGGGATCTGGAGTCAAAGAGGACGAGCAGCGGGGG
CAAAGACGGTGCCGGAGAAGTATCTGGGACGGATGCAGCTGTCGCATCAG
CAGCCGTGTCCACGAAGCTATCGGCGACCGAAAGCGACGACAGCGCAGAA
ACAACCGGTGGGGACGTGAGTTTTGGCATCGGTCGAGCTTTGATTGGCGA
TGAAAGTAGAGCCGAAGTTCCGGCTACCGTCGCTGCCGCAGCCGTCTCTT
ACGCGGCTAGCGCAAGGGCGGGCCCCTTGACCTTTGTTCCAGCAGTGCCT
GCTGCAACAAACTTCGAGGCAAAGTATGTTGCAGTCGGTGAGACGGTGTA
CGAGCTTCGGCTAGAGCCGAAACTATCGTAG
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Synonyms
The feature 'Ec-00_003460.1' has the following synonyms
Synonym
Esi0217_0028
Esi_0217_0028