Ec-00_003420.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003420.1
Unique NameEc-00_003420.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length120
Homology
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BLAST of Ec-00_003420.1 vs. uniprot
Match: D7FRQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ3_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.190e-68
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 2 
Query:   62 MSRFLNPIGAASAAMRTPARRRVVQKVLDHASTAVCEREFMMLMNALPEDVEDTKAPAKMETLRTAQKSLQVATQKAAAHRGQDYVTFRMKQLSGVAATKKRRRRNGIGRGRFNLARVY 418
            MSRFLNPIGAASAAMRTPARRRVVQKVLDHASTAVCEREFMMLMNALPEDVEDTKAPAKMETLRTAQKSLQVATQKAAAHRGQDYVTFRMKQLSGVAATKKRRRRNGIGRGRFNLARVY
Sbjct:    1 MSRFLNPIGAASAAMRTPARRRVVQKVLDHASTAVCEREFMMLMNALPEDVEDTKAPAKMETLRTAQKSLQVATQKAAAHRGQDYVTFRMKQLSGVAATKKRRRRNGIGRGRFNLARVY 119
The following BLAST results are available for this feature:
BLAST of Ec-00_003420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRQ3_ECTSI1.190e-68100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3401129..3404591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1557
Hectar predicted targeting categorymitochondrion
Gene idEc-00_003420.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003420Ec-00_003420Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3401129..3404591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003420.1Ec-00_003420.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3401191..3403456 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003420.1.1Ec-00_003420.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3401129..3401259 +
Ec-00_003420.1.2Ec-00_003420.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3402394..3402555 +
Ec-00_003420.1.3Ec-00_003420.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3403328..3404591 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0034205UTR:Ec-00_003420.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3401129..3401190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003420.1CDS:Ec-00_003420.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3401191..3401259 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0034203UTR:Ec-00_003420.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3403457..3404591 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003420.1 ID=Ec-00_003420.1|Name=Ec-00_003420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=120bp
MSRFLNPIGAASAAMRTPARRRVVQKVLDHASTAVCEREFMMLMNALPED
VEDTKAPAKMETLRTAQKSLQVATQKAAAHRGQDYVTFRMKQLSGVAATK
KRRRRNGIGRGRFNLARVY*
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spliced messenger RNA

>Ec-00_003420.1 ID=Ec-00_003420.1|Name=Ec-00_003420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr_00:3401129..3404591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGGGCGCACAGCGCACAGCGTGGAACCACCGACGAGCCCAGGGTGAAGTG
TGTGGATCTGCCATGTCCAGATTTCTCAATCCCATCGGGGCCGCTTCGGC
TGCTATGCGGACGCCTGCCCGACGTAGAGTGGTACAAAAAGTGCTCGACC
ATGCGAGCACGGCGGTGTGTGAGAGGGAGTTCATGATGCTGATGAACGCC
CTGCCGGAGGACGTGGAGGACACCAAGGCACCGGCCAAGATGGAGACGTT
GCGGACGGCGCAGAAGTCCCTACAAGTGGCCACCCAGAAAGCGGCAGCTC
ACCGAGGGCAGGACTACGTGACGTTTCGGATGAAGCAGCTCTCGGGGGTG
GCGGCGACGAAGAAGAGGCGTCGCCGAAACGGGATTGGTCGGGGACGATT
CAACCTTGCCAGAGTTTATTAGTCGTCGCCCCCAACACTTGGAGGGTTGT
ATTTCACGTTTCTAGTTTGGAGGAGGAGGTCGAGTCATGTACTCGATTAC
ATGTCATGGTGTGATCGTGTTTTTTTCGAAGATGGGAGTGTTCTTGGTAC
AGTATAAGGCGAAGCTTTCAGGTATCGGTGATGGTTTTGGCCAGTTCGAC
GTGTGGCTCCTTATGTTGGACTTTAAAGCCTCGGCGCTGAGCATTAGTGG
TACTTTTGTTCTTTGGCGTCCCCGTTAGGTGAAAGAAGAGGGCAAAATAA
TAACTGAAAGGCCAAAACAACAAACGCTTTCACTCAGGCTGAGGCTGGTC
GTGAACTGAACCGTAAGTTACACACAACATCGCCACACACCACGGGCTGA
TTCATTGAGTGCAAAGTTCTCCAAAGTAAGCAAGGTGGGCGTGGAAAAGT
GCGGCGCTCAAAATACCATGCCCAGAGACCCATCTTTCGTTGTTGGCATC
CCTTTTGTTGAAACGTGGACCACATGGGCAAGTGTGACACCGAACATGAT
TGCTTGATATTTTTTTACCGTAACACCACCGCTTGAGACGGACAATCCTA
TCGGACAAAGCACCGATGAATGACAGGCAAGCCCAAGGCTAATACAACGC
ACTGACCCCCCCAAACCTATTTACACACATATCCGCACTTATGTTACGCC
AAGAACCACACACTCTAGGCCGACGATGCATTCTCAGAGCGACTACACTG
CAACATTGTATTGCCCTCAGTCGCCGTACGCAGGCAGGCTCAACCAAACA
CAAGAGCCCAAACATCTTGTGTACGAAATCAGCGGACGTTCGTGGCAACG
ATACCCACTTTGTTGCTGAACTGAGAAACAACCGCTTTCTCTGCGAACTG
CTGTAGTCCTAGAAACAGCGCCGCCGCTTGGAGTGTCAAGCCGACCTGTC
CACCCCCCTCGTCTGGTGAGGCACCTCCCACAAGTTTGTGGACTGACGGT
ACAAGAGCTAGTGCACATCCGCCCGACGGACTTTTACCATGCCGACGAAA
AGTGCTGCTGCTGCAAACACGACCCGGGCTGTTATTGTTGCGGGCCAGCG
GTGAGTGAGCACCCCTGGCGAGTATAGCCGAACAAATCCTCATGTCTACC
GATTTCA
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protein sequence of Ec-00_003420.1

>Ec-00_003420.1 ID=Ec-00_003420.1|Name=Ec-00_003420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=120bp
MSRFLNPIGAASAAMRTPARRRVVQKVLDHASTAVCEREFMMLMNALPED
VEDTKAPAKMETLRTAQKSLQVATQKAAAHRGQDYVTFRMKQLSGVAATK
KRRRRNGIGRGRFNLARVY*
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mRNA from alignment at chr_00:3401129..3404591+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003420.1 ID=Ec-00_003420.1|Name=Ec-00_003420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3463bp|location=Sequence derived from alignment at chr_00:3401129..3404591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGGGCGCACAGCGCACAGCGTGGAACCACCGACGAGCCCAGGGTGAAGTG
TGTGGATCTGCCATGTCCAGATTTCTCAATCCCATCGGGGCCGCTTCGGC
TGCTATGCGGACGCCTGCCCGACGTAGAGTGGTGAGTACCTTGCCTCTGG
AGGGGCTAATGTCGCAGCACAACAACACGCCGCTTCTTGGCCTACTTCAC
AGACATAATATCATAGGCTTCCAAAGCGTATCCTACCGTAGCGGTACTTG
AATATGAAACACAGCTCACAAATGCACGCTGTCAAGTTGCAATAGCCTAT
GAATCGGCAATCGCTTATACACTATCATTCCCTGCAGCTTGATATATAGC
TGCTGATTGCGCCTCGTAAGGCAGGCCGGCCCGAGTGTTCTTTGCTCGGT
TCTTGCGGTTGGTGAGCGGCAAAGGTCCCTTACCAAACAGACTCAATCGT
GAGTGCCGTATGGATCGGTGTTGCAACCGTTTTCGTCAGTGATTGCCAGC
AAATGCCGGCAAGACAATGGCCGCGGTAAACCAAAAAAGTGACAACCGAA
ACAGCAGTTCAAAACTGCTGCCTCCCTGATTGACAGCCCCGGTCTTGAAC
TTGGAAGCGCACGAGCGCAAAGAGGGCCGGGCGCAAATACGGCATCGTAT
GTATGCGAGCGGCAATCACGCCAAGGTGGAGCATGTACTAGTAAATCTTC
CTTTATTTGTATTTTGAAACCTTGAATTGTTCTCGCAGGCTAGACTACAG
CAGTGGGCCCTCAACAACACCGGTACGTGCCCGGCAAACAGACCGGCCCT
ATTCAGAAGGACAGGCGCTATTCAAAGTACAGAATGAATTGGTGATTCGG
TCGGTGCCGGGCAAGTCACGGCGCTACACAGGGCCACCGGCGTTATTCAA
CCGGCGTTGTTGAGGGCCCACTACTACGGTAGTGGTATGTCGTTCGCTAG
ATGGCAGTTCAAGCCACTTTGCTCCTTGTGTGTGACCAGCCTTGCTCCTG
GCTCGTGCCGCGTTGTTTCCAGCAGAGGAAAGGAACACTCATACCGATGA
GCAGCACACACTTGCACCTGGATACGGAACGTGGTAACATCTACATCTAC
ACTAGAATCGACACCGATGCAACCCATACTTCTAGCCTTTTCATGCATGC
TGGGCAACGCATCACGTCGCCTCTGAATTGTACCTTTTCGGTCTACCGGT
ATAGCAGTAGTTGTTGCATGACTTTGGCCGACCACGATATTTCGGGTGCC
CTCCCTGGTATACAGGTACAAAAAGTGCTCGACCATGCGAGCACGGCGGT
GTGTGAGAGGGAGTTCATGATGCTGATGAACGCCCTGCCGGAGGACGTGG
AGGACACCAAGGCACCGGCCAAGATGGAGACGTTGCGGACGGCGCAGAAG
TCCCTACAAGTGGCCACCCAGAAAGCGGTGAGTGCTCGCTTGGGTCTAGC
GCCAGTCCACGTGGCGCATGACGGTTGGTGCTCTTTTTTATGAAGTCAAA
TGCCAGTCCAGCCAACTGTTGTTTGTGTTGTTGAGCGGGGCATGAAGCAG
GGACACCGCAGCGGGGCGGGGGTTCCTCGCGAAACTACTGTAGCATCTCG
ATCCTTGTGTGGCGAACGCCTTTTTCTCGTTGCGAGATCATTCAACCAGA
ATTGGTTTGCGCGAGTCGAACAGGGCACTGTAGTGTGAGAAACGTGTTGG
TACTTGAGTACGATACCTCGCCACCTTGTGCTCATCTTTGTTGCAAGGTG
AACGGGCGAGACAATCATTTTTTTCCCCGCACGTGCCATCAATTGTATGT
GTAAAATTTTGAGCCGACATCGACGTGTGGCACTCGTTTATACCGTTGAC
GCCCTTCGTTCTTGCTCTGGCAACGTGGATATTCCCTGTTTCTACTCCTA
CCACCCAAACTCATCCTTCTGCCCTCTTCTTGTCGGTTGCCTCCCAACAG
CATGAGCGTTTCATCGTAGACGCCTGTGTTGCAATTGGTAATGAGGTGTT
GACGTTCTCTCTGCTTCTGTCAGCCATGACCGTTTGAGTCCTCTGCGGCA
CTCCGTCGTTCGAAGGGTATCGGAAACAATGCAAAAGTCGAACTTCATTG
GTTCTTCGCTCTTCCGTTTTATTGCTTCCTTCACGCACCACGTTTCGCGA
ACTTACCAACCCGTTATTTCAACCGCCACAACTTCTGCTGTATAACCAGG
CAGCTCACCGAGGGCAGGACTACGTGACGTTTCGGATGAAGCAGCTCTCG
GGGGTGGCGGCGACGAAGAAGAGGCGTCGCCGAAACGGGATTGGTCGGGG
ACGATTCAACCTTGCCAGAGTTTATTAGTCGTCGCCCCCAACACTTGGAG
GGTTGTATTTCACGTTTCTAGTTTGGAGGAGGAGGTCGAGTCATGTACTC
GATTACATGTCATGGTGTGATCGTGTTTTTTTCGAAGATGGGAGTGTTCT
TGGTACAGTATAAGGCGAAGCTTTCAGGTATCGGTGATGGTTTTGGCCAG
TTCGACGTGTGGCTCCTTATGTTGGACTTTAAAGCCTCGGCGCTGAGCAT
TAGTGGTACTTTTGTTCTTTGGCGTCCCCGTTAGGTGAAAGAAGAGGGCA
AAATAATAACTGAAAGGCCAAAACAACAAACGCTTTCACTCAGGCTGAGG
CTGGTCGTGAACTGAACCGTAAGTTACACACAACATCGCCACACACCACG
GGCTGATTCATTGAGTGCAAAGTTCTCCAAAGTAAGCAAGGTGGGCGTGG
AAAAGTGCGGCGCTCAAAATACCATGCCCAGAGACCCATCTTTCGTTGTT
GGCATCCCTTTTGTTGAAACGTGGACCACATGGGCAAGTGTGACACCGAA
CATGATTGCTTGATATTTTTTTACCGTAACACCACCGCTTGAGACGGACA
ATCCTATCGGACAAAGCACCGATGAATGACAGGCAAGCCCAAGGCTAATA
CAACGCACTGACCCCCCCAAACCTATTTACACACATATCCGCACTTATGT
TACGCCAAGAACCACACACTCTAGGCCGACGATGCATTCTCAGAGCGACT
ACACTGCAACATTGTATTGCCCTCAGTCGCCGTACGCAGGCAGGCTCAAC
CAAACACAAGAGCCCAAACATCTTGTGTACGAAATCAGCGGACGTTCGTG
GCAACGATACCCACTTTGTTGCTGAACTGAGAAACAACCGCTTTCTCTGC
GAACTGCTGTAGTCCTAGAAACAGCGCCGCCGCTTGGAGTGTCAAGCCGA
CCTGTCCACCCCCCTCGTCTGGTGAGGCACCTCCCACAAGTTTGTGGACT
GACGGTACAAGAGCTAGTGCACATCCGCCCGACGGACTTTTACCATGCCG
ACGAAAAGTGCTGCTGCTGCAAACACGACCCGGGCTGTTATTGTTGCGGG
CCAGCGGTGAGTGAGCACCCCTGGCGAGTATAGCCGAACAAATCCTCATG
TCTACCGATTTCA
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Coding sequence (CDS) from alignment at chr_00:3401129..3404591+

>Ec-00_003420.1 ID=Ec-00_003420.1|Name=Ec-00_003420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=360bp|location=Sequence derived from alignment at chr_00:3401129..3404591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCCAGATTTCTCAATCCCATCGGGGCCGCTTCGGCTGCTATGCGGAC
GCCTGCCCGACGTAGAGTGGTACAAAAAGTGCTCGACCATGCGAGCACGG
CGGTGTGTGAGAGGGAGTTCATGATGCTGATGAACGCCCTGCCGGAGGAC
GTGGAGGACACCAAGGCACCGGCCAAGATGGAGACGTTGCGGACGGCGCA
GAAGTCCCTACAAGTGGCCACCCAGAAAGCGGCAGCTCACCGAGGGCAGG
ACTACGTGACGTTTCGGATGAAGCAGCTCTCGGGGGTGGCGGCGACGAAG
AAGAGGCGTCGCCGAAACGGGATTGGTCGGGGACGATTCAACCTTGCCAG
AGTTTATTAG
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Synonyms
The feature 'Ec-00_003420.1' has the following synonyms
Synonym
Esi0217_0022
Esi_0217_0022