Ec-00_003400.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003400.1
Unique NameEc-00_003400.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length448
Homology
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BLAST of Ec-00_003400.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 754 bits (1946), Expect = 6.070e-268
Identity = 443/447 (99.11%), Postives = 443/447 (99.11%), Query Frame = 1 
Query:  871 MSAAVSNAPASAXXXXSTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAAAVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKEARKELITYFVFGAGPEGLPTEAGAGAGAGKKGNRPKQQERGNGASGDELQVSRTSSRRWRRXXXXXXXXXXXXXXXGAGVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAVTAAATPTGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAGXXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV 2211
            MSAAVSNAPASA    STTMATDDVEAPALDPTRDQLRPGGHPTTSGDAAAVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKEARKELITYFVFGAGPEGLPTEAGAGAGAGKKGNRPKQQERGNGASGDELQVSRTSSRRWRRXXXXXXXXXXXXXXXGAGVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAVTAAATPTGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAGXXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV
Sbjct:    1 MSAAVSNAPASAASAASTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAAAVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKEARKELITYFVFGAGPEGLPTEAGAGAGAGKKGNRPKQQERGNGASGDELQVSRTSSRRWRRXXXXXXXXXXXXXXXGAGVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAVTAAATPTGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAGXXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV 447
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BLAST of Ec-00_003400.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 7.510e-129
Identity = 273/453 (60.26%), Postives = 285/453 (62.91%), Query Frame = 1 
Query:  859 KKSGMSAAVSNAPASAXXXXSTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAAAVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKEARKELITYFVFGAGPEGLPTEAGAGAGAG--KKGNRPKQQERGNGASGDELQVSRTSSRRWRRXXXXXXXXXXXXXXXGAGVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAVTAAATPTGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAGXXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV 2211
            +++ MSAAVS+APA  XXXX         EAP LDPTRDQLRPGGH TTSGDAAAVELAT LDAGDAA PAG  Q   TPR  EGSSLP L+G+A ++S IFILGDL+NKRMLHP S  VFLLSVSYCVAMLRRQWASTGGGTREG NNSFTKEAR+ELITYFVFGAGPEGLPTEAGA       KKGNRPKQQERGNGASGDELQ+ R                                                                     VL                                               EQ      AA EDDP RA  DSGEWSTGQACIVCFGDYEPGDRLA LPCRHVYHAQCIDEWLDRAK+PSCPLCKTDLRHATPPDD  RSISTAGXXXXXXXXXXXXXXXXXXXX ERVEFTGDNAV
Sbjct:   16 RRAEMSAAVSHAPAXXXXXXXXXXXXX-XEAPTLDPTRDQLRPGGHATTSGDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNSFTKEAREELITYFVFGAGPEGLPTEAGAXXXXXXXKKGNRPKQQERGNGASGDELQLLRL--------------------------------------------------------------------VLSY--------------------------------------------REQPVKVKAAAEEDDPARA-CDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAGXXXXXXXXXXXXXXXXXXXX-ERVEFTGDNAV 353
[Close]
BLAST of Ec-00_003400.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 1.190e-83
Identity = 168/243 (69.14%), Postives = 173/243 (71.19%), Query Frame = 1 
Query: 1486 SRRWRRXXXXXXXXXXXXXXXGAGVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLE-EEVLDGDAATAATAEDAAVTASPGHATAAVTAAATPTGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAGXXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV 2211
            SRRWRR        XXXXXXX      GGAARNGRIDANNADT GSLSAN P PSTGPCSPAPLE EEV+ GDAATA TA DAA+ ASP HATAAVTA ATP  PELP A G+ A E            DDP RA  D+GEWSTGQACIVCF DYEPGDRLA LPCRHVYHAQCIDEWLDRAK+PSCPLCKTDLRHATPPDDRSRSIST G                     E VEFTGDNAV
Sbjct:   13 SRRWRRERQRGSSDXXXXXXXXXXXXXGGAARNGRIDANNADTRGSLSANAPAPSTGPCSPAPLEAEEVVHGDAATAVTAADAALAASPRHATAAVTATATPADPELPGANGDAAEEXXXXXXXXXXXXDDPARA-CDTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGTSVNAARVGGGSGGG---EGVEFTGDNAV 251
[Close]
BLAST of Ec-00_003400.1 vs. uniprot
Match: A0A6H5JDD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD0_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.390e-59
Identity = 118/143 (82.52%), Postives = 120/143 (83.92%), Query Frame = 1 
Query:  871 MSAAVSNAPASAXXXXSTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAAAVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTG--GGTRE 1293
            MSAAVSNAPASA    +T     DVEAP L PTRDQLRPGGH T  GDAAAVELAT LDAGDAA PAGGAQL TTPR LEGSSLPFLAGLA IISTIFI+GDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTG  GG  E
Sbjct:    1 MSAAVSNAPASAASAAATMATAGDVEAPTLYPTRDQLRPGGHATMPGDAAAVELATDLDAGDAAAPAGGAQLNTTPRPLEGSSLPFLAGLAAIISTIFIVGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGESGGAME 143
[Close]
BLAST of Ec-00_003400.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.960e-15
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1 
Query: 1906 WSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTA 2112
            WS  ++CI+CFG+Y  GD L  LPCRH YHA+CID WLD      CPLCK+ L   + P + S +  TA
Sbjct:   72 WSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSENGETA 140
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BLAST of Ec-00_003400.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.230e-13
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1 
Query: 1906 WSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAG 2115
            WS+G++CI+CFG+Y  GD L  LPCRH YHA+CID WLD      CPLCK+ L   + P + S +    G
Sbjct:  452 WSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGSDNDEIGG 521
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BLAST of Ec-00_003400.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.490e-13
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1 
Query: 1900 GEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDL 2064
            GE STG +CIVCFGDY  G+ L  L C H+YHA+CIDEWLD      CPLCKTD+
Sbjct:  244 GEGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 298
[Close]
BLAST of Ec-00_003400.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.790e-12
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query: 1900 GEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDL 2064
            GE ST  +CIVCFGDY  G+ L  L C H+YHA+CIDEWLD      CPLCKTD+
Sbjct:  251 GEGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305
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BLAST of Ec-00_003400.1 vs. uniprot
Match: A0A1D1XYA5_9ARAE (E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XYA5_9ARAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.800e-10
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 1 
Query: 1885 AQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLR 2067
            A +D GE  T   C +C  D+E GD L LLPC+H YH +CID WL   K  SCPLCKTD R
Sbjct:  125 AVTDDGEVDT---CAICIEDFENGDELRLLPCKHWYHVECIDPWLT-TKSSSCPLCKTDCR 181
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BLAST of Ec-00_003400.1 vs. uniprot
Match: A0A7S0Y4G8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y4G8_HEMAN)

HSP 1 Score: 67.4 bits (163), Expect = 7.700e-10
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query: 1915 GQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCK 2055
            G  CI+C  DYE GD   LLPC HV+H++C+DEWL  ++  SCP+CK
Sbjct:   60 GLNCIICLTDYEEGDMTKLLPCMHVFHSECVDEWLAISR--SCPMCK 104
The following BLAST results are available for this feature:
BLAST of Ec-00_003400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ1_ECTSI6.070e-26899.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI7.510e-12960.26RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEY0_9PHAE1.190e-8369.14RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JDD0_9PHAE2.390e-5982.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUH7_9PHAE5.960e-1550.72RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LQW5_ECTSI2.230e-1350.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI2.490e-1363.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE2.790e-1261.82RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A1D1XYA5_9ARAE2.800e-1055.74E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 T... [more]
A0A7S0Y4G8_HEMAN7.700e-1055.32Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3390659..3395788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score763.8
Seed ortholog evalue4.4e-218
Seed eggNOG ortholog2880.D7FRQ1
Length2217
KEGG koko:K03257,ko:K15694
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
Gene idEc-00_003400.1
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko04121,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003400Ec-00_003400Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3390659..3395788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003400.1Ec-00_003400.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3390659..3394331 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003400.1.7Ec-00_003400.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3390659..3390871 -
Ec-00_003400.1.6Ec-00_003400.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3391481..3391659 -
Ec-00_003400.1.5Ec-00_003400.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3391936..3392481 -
Ec-00_003400.1.4Ec-00_003400.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3392800..3392926 -
Ec-00_003400.1.3Ec-00_003400.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3394053..3394389 -
Ec-00_003400.1.2Ec-00_003400.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3394661..3395055 -
Ec-00_003400.1.1Ec-00_003400.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3395369..3395788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003400.1CDS:Ec-00_003400.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3390659..3390871 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0034005UTR:Ec-00_003400.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3394332..3394389 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003400.1 ID=Ec-00_003400.1|Name=Ec-00_003400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=448bp
MSAAVSNAPASAASAASTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAA
AVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFIL
GDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKE
ARKELITYFVFGAGPEGLPTEAGAGAGAGKKGNRPKQQERGNGASGDELQ
VSRTSSRRWRRERQRSSGGDDDDIVGGAGVSDGGAARNGRIDANNADTGG
SLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAV
TAAATPTGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQ
ACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRH
ATPPDDRSRSISTAGGGGTSVNAARVGGGSGGGGGGERVEFTGDNAV*
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spliced messenger RNA

>Ec-00_003400.1 ID=Ec-00_003400.1|Name=Ec-00_003400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2217bp|location=Sequence derived from alignment at chr_00:3390659..3395788- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTCGTTGTCCTTATTACATGCGCTGAGAACTGGAAACCATTCGTCTCAAA
GGAGAATCTTGAATGCTGTGCGTGTGTGTGTAGGTGTCCCTACAACACAA
CAACACCAGCATCAAGCCCGCACCACCAGATCCACACTTCTTTCGATGCA
AAACTAGGTTACACCTCCTTGGCCGAGCTGCTATTCTCCGCCCACACACG
AGCTGGGCCCATCCGATTTCCCGACTTGCAAGGCACGTACGCGTGTGGGA
GCTGCCTCCAGGGCTCATCGTTCACGGTCGATCGACGGGAGGAGCAGTTC
CACCAGTTAGTTCCGCAAGAACGTTCCGGGAGTTGCGAGGGCGTGAGCAC
TATAACGCGGCGGTGGAGCCTGCTTCCTGCTGCGCGTGCAAGAACCTGGG
CGAAGCTTGTTCTCCAAGAGATCTACCAACACACCAAGCAATAGCGGAAC
ACATCGTGTTTTTTGGGTCGAATCCCGCGCCTGTTGCCAGCAGCGGGACG
AAGGCTGTGTGTGGTGTACGTGCAGGCCTGCCATATCGCGCCACTCCGAG
AGCACAGTCCCACCCCTCACGAGCATAGCCAACTTTAGGGTTGTGCGTCG
TGAGGCGCTGCGCGTCAGGCTCCCCCAACGGTGTGGTTCATCCTCCCGTT
GCAACGGATCGTCGATCTTGGCGAGAACGGGCGGCGGGTACAAGAGACCG
CCGGGAAAATATAGTCTACCGGTCATCCGGCCAATCCGGCCGCGGTGATA
TCTATGTATCTAGCTCCCAGCCCGACTCCCTGGTGTCGCCACACACGTTT
GAGCACACGTGTCACTATATTACTGTAGGTGTTCGTCTCCGACGGCGAGG
TAGACGCACGAAGAAGAGCGGAGATGTCGGCGGCTGTGTCCAATGCACCG
GCTTCGGCCGCTTCAGCAGCTTCAACAACAATGGCAACAGACGACGTCGA
GGCACCTGCTCTCGACCCAACACGCGACCAACTGCGGCCAGGAGGGCACC
CGACAACGTCGGGAGATGCTGCAGCGGTAGAGCTGGCGACCGGCCTGGAT
GCTGGCGACGCTGCTGGCCCTGCTGGCGGCGCGCAGCTTTATACCACTCC
GCGAGCGCTGGAAGGATCCAGTCTTCCTTTTCTGGCTGGATTGGCGGGGA
TTATATCCACGATCTTCATCCTCGGCGACCTCTTGAACAAGCGCATGCTC
CATCCTGCCAGCATCGTGGTGTTTCTGCTGTCGGTGAGCTACTGCGTGGC
GATGCTGAGGCGACAGTGGGCAAGCACCGGCGGAGGCACGCGGGAGGGGC
GCAACAACAGCTTCACCAAGGAGGCGCGAAAGGAGTTGATCACGTACTTC
GTGTTCGGTGCAGGCCCGGAAGGACTGCCAACGGAGGCGGGAGCGGGGGC
GGGGGCGGGAAAGAAGGGAAACCGCCCAAAGCAACAAGAGCGGGGCAACG
GTGCATCGGGTGATGAGCTTCAGGTTAGCAGGACCAGCAGCAGGAGGTGG
CGTAGGGAACGCCAGCGCAGCAGCGGTGGTGACGACGACGACATTGTAGG
AGGTGCCGGCGTCAGCGACGGCGGTGCAGCGCGGAACGGTCGCATCGACG
CCAACAACGCGGATACCGGCGGCTCGCTTTCCGCGAACACGCCGATGCCT
TCCACGGGGCCTTGTTCTCCGGCACCATTAGAAGAAGAAGTTCTTGATGG
CGATGCTGCTACTGCTGCTACCGCCGAGGACGCTGCTGTGACTGCCTCCC
CCGGACATGCAACAGCTGCTGTCACCGCCGCAGCTACTCCGACTGGTCCT
GAGCTACCGAGAGCAACCGGTGAAGATGCAGCAGAAGAACAAGCGTCAGC
AGCGGCGAAGGCCGCTGCAGAGGACGACCCGACCAGGGCACAATCCGACT
CGGGAGAGTGGTCGACGGGTCAAGCGTGCATCGTGTGCTTCGGCGACTAC
GAGCCCGGAGACCGGTTGGCCCTCCTGCCGTGCCGGCACGTGTACCACGC
ACAGTGCATCGACGAGTGGTTGGACAGGGCGAAAATCCCTAGCTGTCCGT
TGTGCAAGACGGACCTTCGCCATGCCACGCCCCCCGATGATCGCTCTAGG
AGCATCTCTACTGCTGGTGGGGGCGGTACGAGTGTCAATGCTGCCAGAGT
TGGAGGAGGCAGCGGCGGCGGCGGCGGGGGGGAGAGGGTCGAGTTTACGG
GTGACAACGCCGTGTAA
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protein sequence of Ec-00_003400.1

>Ec-00_003400.1 ID=Ec-00_003400.1|Name=Ec-00_003400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=448bp
MSAAVSNAPASAASAASTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAA
AVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFIL
GDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKE
ARKELITYFVFGAGPEGLPTEAGAGAGAGKKGNRPKQQERGNGASGDELQ
VSRTSSRRWRRERQRSSGGDDDDIVGGAGVSDGGAARNGRIDANNADTGG
SLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAV
TAAATPTGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQ
ACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRH
ATPPDDRSRSISTAGGGGTSVNAARVGGGSGGGGGGERVEFTGDNAV*
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mRNA from alignment at chr_00:3390659..3395788-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003400.1 ID=Ec-00_003400.1|Name=Ec-00_003400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5130bp|location=Sequence derived from alignment at chr_00:3390659..3395788- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTCGTTGTCCTTATTACATGCGCTGAGAACTGGAAACCATTCGTCTCAAA
GGAGAATCTTGAATGCTGTGCGTGTGTGTGTAGGTGTCCCTACAACACAA
CAACACCAGCATCAAGCCCGCACCACCAGATCCACACTTCTTTCGATGCA
AAACTAGGTTACACCTCCTTGGCCGAGCTGCTATTCTCCGCCCACACACG
AGCTGGGCCCATCCGATTTCCCGACTTGCAAGGCACGTACGCGTGTGGGA
GCTGCCTCCAGGGCTCATCGTTCACGGTCGATCGACGGGAGGAGCAGTTC
CACCAGTTAGTTCCGCAAGAACGTTCCGGGAGTTGCGAGGGCGTGAGCAC
TATAACGCGGCGGTGGAGCCTGCTTCCTGCTGCGCGTGCAAGAACCTGGG
CGAAGCTTGTTCTCCAAGAGGTATGTGTAGTACCATAGTTTCAAGCAACT
AGAACTGAGAGGTCGTGGAGGGTGCACACTGCTGTTGTCTGCTGTTGTTG
CGTTTGCTGCCAAAAGAAACGTTCGTATATAAAACATCCAAGCGTGCTTT
TGTATTTCTCCGCCAGGCCCGCCAGGCCCGCCAGGCCCGCCGGGAGATTC
TCCACCGCGAAGGGACGATCATCTTGGTAGACAACTCTCACCTGCGGGTG
TATGGAGAGAGGCGAACAGAGGCAGCAAAGCGAAGCACAAGAGTTCTGCC
ACCACGCATGCTTTGTTTCTATCTTTGATGCAGATCTACCAACACACCAA
GCAATAGCGGAACACATCGTGTTTTTTGGGTCGAATCCCGCGCCTGTTGC
CAGCAGCGGGACGAAGGCTGTGTGTGGTGTACGTGCAGGCCTGCCATATC
GCGCCACTCCGAGAGCACAGTCCCACCCCTCACGAGCATAGCCAACTTTA
GGGTTGTGCGTCGTGAGGCGCTGCGCGTCAGGCTCCCCCAACGGTGTGGT
TCATCCTCCCGTTGCAACGGATCGTCGATCTTGGCGAGAACGGGCGGCGG
GTACAAGAGACCGCCGGGAAAATATAGTCTACCGGTCATCCGGCCAATCC
GGCCGCGGTGATATCTATGTATCTAGCTCCCAGCCCGACTCCCTGGTGTC
GCCACACACGTTTGAGCACACGTGTCACGTAAGTTTCGCTATCGGTTTGC
CGAAAATATATGGCCAGCGCCGCCGGCTACTGATGTCTCTGTGACCGCCG
TCCGTAGCTCGGTGAGGTACCCACCCTAATATTGCTATTAAAGAGCAAGT
TGAAATATGGTGCGAAGGTTGAACCTGAAATTGCAACGTCCCGTATCCCT
CCGCCGCAACCCCCTCCAACCGCACGCGCGCACGTTGCTTAAGGATGTGA
GTGATTCCCCTCACCCTCCCTCCCTGCTACCACTGCTGCGCCCAAACAGT
ATATTACTGTAGGTGTTCGTCTCCGACGGCGAGGTAGACGCACGAAGAAG
AGCGGAGATGTCGGCGGCTGTGTCCAATGCACCGGCTTCGGCCGCTTCAG
CAGCTTCAACAACAATGGCAACAGACGACGTCGAGGCACCTGCTCTCGAC
CCAACACGCGACCAACTGCGGCCAGGAGGGCACCCGACAACGTCGGGAGA
TGCTGCAGCGGTAGAGCTGGCGACCGGCCTGGATGCTGGCGACGCTGCTG
GCCCTGCTGGCGGCGCGCAGCTTTATACCACTCCGCGAGCGCTGGAAGGA
TCCAGTCTTCCTTTTCTGGCTGGATTGGCGGGGATTGTGAGCTGGTTCTC
TCCTTTGTTCTTTGGAATCCCCTCACGGCACTCTCGGTGGATTTTTTAGG
CCTCTCTTCCCATATTTTCTTGGCGCCAGTCTACTGCTGTAGTAGGCCTC
TCTTCCCATATTTTCTTGGCGCCAGTCTACTGCTGTAGTCAGCTAATATT
TGAAGAACCGGCTGATGCCACACAAGAGGAAGACCACCTTTTTTTGCTCT
GGTGACGATTTACCTTCAATATATTGTGCATGATACAACTAATAGCGTAC
TTTCAAATTTTTCATTCAACTGCTGCTACCCGTAGAGGTGGAGAGATAAG
ACCCCCACCTATCTATGGAGACCGATTTTCAAAGCTCGCTTGCTCCACAA
CCAAGATTGTGCCAACAACAAGAGTGATGTTGTTGTGAAAAATCGCGTCT
TGGGCTTTCCGTGGAATTATCGAGTTCTTCCCGCACCCCTTGGTTGTGGA
GCAATCGAGGTTTGAAAATCGGTCCGGGGGGGGTGCCATCTCTCCGCCCC
TTGCGGATGTACATTTAGTCCAACGGTAGCGTTTCAAGTCTTCTAATCCT
GTAGTAACCCCCCCACAAATCTCAAACGACGACTTGTCTTGTAAAGTAAT
GCAGCGGTGTTCAAGTCAAGAAGTTGCCGGCTCCACTCCTGATCTAGAAT
GAAGTCCATTTGAACTGTTGACTTGGGTCGACTTTGTTGGAACGAAGGCT
GCCCATACGCCTTGCCTCGGTGCTCCTGGGTTTGTTCGGGATCATCCAAT
CAGGCGTCGTGTACCGCCTGTTGTACCTGTCCGGGCGATACCGTGTGTTC
CTCCTGCTGTTGCGCAGAGATCAATGTCCAACGTTTTGTTCTTCGTAGCC
TCGGTGCCACATTGTACACGATCAGTTAAGACCGTCTGGAAACATTTCAA
CATCGCGGCATCATTGGAGATGAACCAACATCACGCATACACCCCCCGCT
GCACACTACATAGAACCGCCGAGAATACGTCCACGTGAGAGACAGAATTC
CTGCATTTTGTGTTGTCTCTATCGATGGTGCGCCGTCGTCTATGCTATTT
ATCGCGCTCGCCCACGCTTACGTACGTCGTTTCCTCCCTCTCCCCGCTCT
TGCCAAGAACAGATATCCACGATCTTCATCCTCGGCGACCTCTTGAACAA
GCGCATGCTCCATCCTGCCAGCATCGTGGTGTTTCTGCTGTCGGTGAGCT
ACTGCGTGGCGATGCTGAGGCGACAGTGGGCAAGCACCGGTGAGTCAGGC
GGTGCGATGGAACACCAGGTAGATGACATCAATCTTGACATACTTGATCT
TGTGTGTGTTGGGAAGGTGGCCTTTCACCAGGGAAGGCGCCCAAGTCTGT
TGGACCAGTACGGATACTAGGAGGTACTGAGAAGAGACCAGCCAGATCTT
TACTTTTTATGCGACAATAGCAATTACAACAACGACAACAACAACAACAT
GCGTCAACATGCTTCAACATGCGTCCCTCCGCTCCGCGCAGCATTTTTTT
GTGTGAGACAACCGATAATGTATTCATATTTTTTCGGTGCCGACCTACTA
TACACAGGCGGAGGCACGCGGGAGGGGCGCAACAACAGCTTCACCAAGGA
GGCGCGAAAGGAGTTGATCACGTACTTCGTGTTCGGTGCAGGCCCGGAAG
GACTGCCAACGGAGGCGGGAGCGGGGGCGGGGGCGGGAAAGAAGGGAAAC
CGCCCAAAGCAACAAGAGCGGGGCAACGGTGCATCGGGTGATGAGCTTCA
GGTTAGCAGGACCAGCAGCAGGAGGTGGCGTAGGGAACGCCAGCGCAGCA
GCGGTGGTGACGACGACGACATTGTAGGAGGTGCCGGCGTCAGCGACGGC
GGTGCAGCGCGGAACGGTCGCATCGACGCCAACAACGCGGATACCGGCGG
CTCGCTTTCCGCGAACACGCCGATGCCTTCCACGGGGCCTTGTTCTCCGG
CACCATTAGAAGAAGAAGTTCTTGATGGCGATGCTGCTACTGCTGCTACC
GCCGAGGACGCTGCTGTGACTGCCTCCCCCGGACATGCAACAGCTGCTGT
CACCGCCGCAGCTACTCCGACTGGTCCTGAGCTACCGAGAGCAACCGGTG
AAGGTGAGAGGCGGAGGAGGGCGAAGAGGGGGGGTTGGACACGTTAAAGA
GTTGCGATCGTGGTGGCCGTATGCTTTCGTGTTGCTTCTCTCTGCATTGT
CTTTCGAGCATCAACAGGCTTGAGGAGAAGTTCTTCCCCCTCGCCCCGAA
GAAGTGCAAGTTGCGCACAATGTGCACCACAAGAGCAAGCTAAACTGAAC
GTTTTAAAAAAGAACACCCAATGAGGATACAATCGTAATATCAGGACGGA
ACTTTCCTTGCGCACGTTCCTTCAAGCAGATGCAGCAGAAGAACAAGCGT
CAGCAGCGGCGAAGGCCGCTGCAGAGGACGACCCGACCAGGGCACAATCC
GACTCGGGAGAGTGGTCGACGGGTCAAGCGTGCATCGTGTGCTTCGGCGA
CTACGAGCCCGGAGACCGGTTGGCCCTCCTGCCGTGCCGGCACGTGTACC
ACGCACAGGTATATATCATCCATCTGCGCGCGCGTGTATATATGTGTGTC
CATGTTGTTAGTATCGACGGAGCTAACCGGCTGACCTATGAAAAAACGTC
AGTCTCAGTGCGGTTGAAATGTATGTGTGTGTTTGTTTTATCGCTAATAT
TTCGTGTAGTTTCTACTTGGAAGTAGTCGATTACGGCGGGGATCGCGCGA
GGCGATCCACGGTCGTTGTTCGAACCACACGGACTTGCTCTTGTCGTAGG
TGTCGGGGGGGGGCACGCGACAGGCGGTCGACGGTGCTAAGTGGTAGTCT
CGAGTTGTACCTTCGTGCGCATCAAGTACGGTTGGGAGGGCAGCGGGTTG
CCTCTAAGGATAGTAGTACCACAAATACTTGTAATTTGGTGTGCTTTCTG
TATTACTAAGTCTACCATTAGCTCTATCCCTACATTAACGCAGTTCCCGT
AACCTTTTTCTGGTGTGCACGCTTTCGGCGGGAGAAACGCGCAAAAAATA
AAGTTTACGCCCGAACCCACTCTCCGGTACCAAGCTGAACCCGCCCCCCT
CCCGCCGCCCCCCCACCCTTCGTTTTCCCGCCGGCCATCGAAACTCCAAT
CCAATCGCCGTCATCAGTGCATCGACGAGTGGTTGGACAGGGCGAAAATC
CCTAGCTGTCCGTTGTGCAAGACGGACCTTCGCCATGCCACGCCCCCCGA
TGATCGCTCTAGGAGCATCTCTACTGCTGGTGGGGGCGGTACGAGTGTCA
ATGCTGCCAGAGTTGGAGGAGGCAGCGGCGGCGGCGGCGGGGGGGAGAGG
GTCGAGTTTACGGGTGACAACGCCGTGTAA
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Coding sequence (CDS) from alignment at chr_00:3390659..3395788-

>Ec-00_003400.1 ID=Ec-00_003400.1|Name=Ec-00_003400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1344bp|location=Sequence derived from alignment at chr_00:3390659..3395788- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGGCGGCTGTGTCCAATGCACCGGCTTCGGCCGCTTCAGCAGCTTC
AACAACAATGGCAACAGACGACGTCGAGGCACCTGCTCTCGACCCAACAC
GCGACCAACTGCGGCCAGGAGGGCACCCGACAACGTCGGGAGATGCTGCA
GCGGTAGAGCTGGCGACCGGCCTGGATGCTGGCGACGCTGCTGGCCCTGC
TGGCGGCGCGCAGCTTTATACCACTCCGCGAGCGCTGGAAGGATCCAGTC
TTCCTTTTCTGGCTGGATTGGCGGGGATTATATCCACGATCTTCATCCTC
GGCGACCTCTTGAACAAGCGCATGCTCCATCCTGCCAGCATCGTGGTGTT
TCTGCTGTCGGTGAGCTACTGCGTGGCGATGCTGAGGCGACAGTGGGCAA
GCACCGGCGGAGGCACGCGGGAGGGGCGCAACAACAGCTTCACCAAGGAG
GCGCGAAAGGAGTTGATCACGTACTTCGTGTTCGGTGCAGGCCCGGAAGG
ACTGCCAACGGAGGCGGGAGCGGGGGCGGGGGCGGGAAAGAAGGGAAACC
GCCCAAAGCAACAAGAGCGGGGCAACGGTGCATCGGGTGATGAGCTTCAG
GTTAGCAGGACCAGCAGCAGGAGGTGGCGTAGGGAACGCCAGCGCAGCAG
CGGTGGTGACGACGACGACATTGTAGGAGGTGCCGGCGTCAGCGACGGCG
GTGCAGCGCGGAACGGTCGCATCGACGCCAACAACGCGGATACCGGCGGC
TCGCTTTCCGCGAACACGCCGATGCCTTCCACGGGGCCTTGTTCTCCGGC
ACCATTAGAAGAAGAAGTTCTTGATGGCGATGCTGCTACTGCTGCTACCG
CCGAGGACGCTGCTGTGACTGCCTCCCCCGGACATGCAACAGCTGCTGTC
ACCGCCGCAGCTACTCCGACTGGTCCTGAGCTACCGAGAGCAACCGGTGA
AGATGCAGCAGAAGAACAAGCGTCAGCAGCGGCGAAGGCCGCTGCAGAGG
ACGACCCGACCAGGGCACAATCCGACTCGGGAGAGTGGTCGACGGGTCAA
GCGTGCATCGTGTGCTTCGGCGACTACGAGCCCGGAGACCGGTTGGCCCT
CCTGCCGTGCCGGCACGTGTACCACGCACAGTGCATCGACGAGTGGTTGG
ACAGGGCGAAAATCCCTAGCTGTCCGTTGTGCAAGACGGACCTTCGCCAT
GCCACGCCCCCCGATGATCGCTCTAGGAGCATCTCTACTGCTGGTGGGGG
CGGTACGAGTGTCAATGCTGCCAGAGTTGGAGGAGGCAGCGGCGGCGGCG
GCGGGGGGGAGAGGGTCGAGTTTACGGGTGACAACGCCGTGTAA
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Synonyms
The feature 'Ec-00_003400.1' has the following synonyms
Synonym
Esi0217_0020
Esi_0217_0020