Ec-00_003360.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003360.2
Unique NameEc-00_003360.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length152
Homology
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BLAST of Ec-00_003360.2 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 2.000e-109
Identity = 219/287 (76.31%), Postives = 228/287 (79.44%), Query Frame = 1 
Query:  367 EGRAEKITELSGNPKAHMEALTKDSDTKAK-----LPSKTCSRWRV------RRFELCRSTAT--ESGRYIQQLEHLRPRGHPRDDRQAQDTQSAGLGRWTRGGDVVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGCLRDLSGLPRYRCPECR 1188
            EGRAEKITELSGNPKAHMEALTKDSDTK +     L    C+  R       R   +  S+ +  + G   + +  L+                 GLG        VLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGCLRDLSGLPRYRCPECR
Sbjct:  116 EGRAEKITELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDPGDIHETIAKLKTH--------KVRASVVGLGAEM----FVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGCLRDLSGLPRYRCPECR 390
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BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.560e-49
Identity = 121/286 (42.31%), Postives = 156/286 (54.55%), Query Frame = 1 
Query:  367 EGRAEKITELSGNPKAHMEALTKDSDTKAKLPSKTCSRWRVRRFELCRSTATESGRYIQQLEHLRPRGHPRDDRQAQDTQS-----------AGLGRWTRGGDVVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGCLRDLSG-LPRYRCPECR 1188
            +GRAE++T+LSGNPKAH+EAL +  DT+ +   +            C ++A E G   ++   L    H  D     DT +            GLG        + RR+ E+T GD+ +A DE+HY++SL+AQCTPPPT   + G  FADLV MGFP      F +LGYSG +Q L+  GY CPRCK KT+ELPS C ICALPLVSSPHLARSYHHLFPVP FDE  A+A                            ++A+ S C  CLR  +    R+ CP C+
Sbjct:  127 DGRAERVTDLSGNPKAHIEALARSLDTQGEPSLQNLLELTAH----CLASAPEYG--SREAVVLYGSLHTCDPGNILDTIALLKRHKVRCSVVGLGAEV----YIARRIAEDTGGDFVVAVDEHHYKDSLLAQCTPPPTL-AKRGPHFADLVEMGFPRRVDGTF-ALGYSGRQQTLTAQGYYCPRCKIKTTELPSTCEICALPLVSSPHLARSYHHLFPVPPFDEQEASA--------------------------AADTAAQS-CEACLRPFAAKASRFMCPNCK 373
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BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A7S2Y0G9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 4.870e-33
Identity = 67/128 (52.34%), Postives = 89/128 (69.53%), Query Frame = 1 
Query:  646 VLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPT----PPGREGA---MFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDE 1008
            + R++ E T G + +A D  H RE +MA C PPPT    P G +G    ++ADLV+MGFP +  D+ P+L +SG +Q  S  GY+CPRC +++++LP  C IC LPLVSSPHLARSYHHLFPVP+F E
Sbjct:  241 ICRKVVEGTGGAHGVAKDAGHMRELIMAHCRPPPTRSGGPQGGDGKCGPIYADLVKMGFPRQRSDLRPTLAFSGRQQVFSSEGYTCPRCLSRSTDLPCTCSICGLPLVSSPHLARSYHHLFPVPRFAE 368
[Close]
BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A7J7PM71_9CHLO (General transcription factor IIH subunit n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PM71_9CHLO)

HSP 1 Score: 139 bits (351), Expect = 5.610e-32
Identity = 66/122 (54.10%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:  646 VLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEI 1011
            VLRR TE T G YS+A +E H  E L+A   PPP PPG+   + A+LVRMGFP        S  + G    L+  GY+CPRC+ +T ELP +C +C LPL+SSPHLARSYHHLFPVP F+E+
Sbjct:  131 VLRRATEVTGGSYSVALNEAHLSELLLAHAPPPPAPPGQ---LAAELVRMGFPQRAGGDASSAVFCGELPVLAAGGYTCPRCRARTQELPCKCHVCGLPLISSPHLARSYHHLFPVPAFEEV 249
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BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A7R9YAF6_9STRA (General transcription factor IIH subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAF6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.240e-31
Identity = 95/295 (32.20%), Postives = 137/295 (46.44%), Query Frame = 1 
Query:  367 EGRAEKITELSGNPKAHMEALTKDSDTKAKLPS------------KTCSRWRVRRFELCRS--TATESGRYIQQLEHLRPRGHPRDDRQAQDTQSAGLGRWTRGGDVVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDE--IPAAAPXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGCLRDLSG-----LPRYRCPECR 1188
            +G  +K+T L GNP  H++AL +D    A + S            KT  ++  +   L     T+T+ G     +E L+  G     R +     A +         V +R+ E T GD+ +  D +  R    A   PPPTP   +      LVRMGFP   +   PS  ++G+++ L  +GY CP C  KT++LPS C++C+LPLVSS  LARSYHHLFPVP +D+  +P  A                         +   S+    C+GCL DLS      + R RCP C+
Sbjct:  131 DGAGDKLTALGGNPTVHLQALEEDGTNCAGMASIQNSLELAMALLKTVPQYGTKEVILVYGSLTSTDPGDIHTTIESLKQEGI----RVSVINLVAEI--------YVCKRIAEATGGDHRVVLDLDSLRAHFAAHVRPPPTPSSAKVVKAPTLVRMGFPRRIETSVPSFAFAGDQERLCEAGYVCPECTVKTTDLPSTCMVCSLPLVSSAQLARSYHHLFPVPLYDQDDLPGKA------------------DAEDLELSPRNSSEKPRCSGCLVDLSARIERDVVRLRCPTCK 395
[Close]
BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A2V0NPK1_9CHLO (General transcription factor IIH subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPK1_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 2.540e-30
Identity = 64/122 (52.46%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:  646 VLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEI 1011
            +LRR TEET G Y +A  E H  E L++   PPP PPG   A  A+LVRMGFP    +   +  + G   EL   GY+CPRCK +T ELP  C +C L L+SSPHLARSYHHLFPV  F+E+
Sbjct:  228 ILRRATEETGGAYGVALSEQHLAEQLLSHAAPPPAPPG---AAAAELVRMGFPQRAPEDPAAAVFVGENPELLAGGYTCPRCKARTGELPCRCHVCGLTLISSPHLARSYHHLFPVEPFEEV 346
[Close]
BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A2P6V2Z5_9CHLO (General transcription factor IIH subunit 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V2Z5_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 2.570e-29
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:  646 VLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAA 1020
            + +R+T++T G Y++A +E+H +E ++    PPP PPG        LVRMGFP    +   +  + G++ +L   GY+CPRCK +  ELPS C +C L LVSSPHLARSYHHLFPV  F E+PAA
Sbjct:  518 ICKRMTQQTGGTYTVAMNEHHLQEMVLEHAVPPPVPPGSSAV---SLVRMGFPPRNPEALGAAAFCGSKCQLQPGGYTCPRCKARVGELPSSCHVCGLSLVSSPHLARSYHHLFPVKPFAEVPAA 639
[Close]
BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A835YFI7_9CHLO (C2H2-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YFI7_9CHLO)

HSP 1 Score: 130 bits (326), Expect = 3.820e-29
Identity = 71/172 (41.28%), Postives = 93/172 (54.07%), Query Frame = 1 
Query:  646 VLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPXXXXXXXXXXXXXXXXXXXXXXXATEEESASSS--YCAGCLRDLS 1155
            V RR+ E+T G Y +A  E H  + L+A   PPPT PGR  A   +LVRMGFP  + +   S  + G    L    Y+CPRC+++ +ELPSEC  C L L+SSPHLARSYHHLFPVP + E                             A  +E A+S+  YC GC+R++S
Sbjct:  151 VCRRIAEDTGGSYGVALHEGHMEQLLLAHANPPPTAPGRARA---ELVRMGFPQRSTEEASSAVFVGLDSRLLPGSYTCPRCRSRVAELPSECHTCGLTLISSPHLARSYHHLFPVPPYHE------------DSQDRAAEAEATLASQSAMRDEVATSTGAYCFGCMREVS 307
[Close]
BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A8J4FFS1_9CHLO (C2H2-type domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FFS1_9CHLO)

HSP 1 Score: 127 bits (318), Expect = 4.740e-29
Identity = 69/170 (40.59%), Postives = 88/170 (51.76%), Query Frame = 1 
Query:  646 VLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPXXXXXXXXXXXXXXXXXXXXXXXATEEESASSSYCAGCLRDLS 1155
            V RR+TEET G Y +A +E H  + L+A  +PPP          A+LVRMGFP  + +   S  + G    L    Y+CPRCK +  ELP EC IC L L+SSPHLARSYHHLFPVP + E                               E  +++ SYC GCLR++S
Sbjct:   53 VCRRITEETGGTYGVALNETHLEQLLLAHSSPPPA---TSAQAKAELVRMGFPQRSTEEASSAVFVGLEARLLSGNYTCPRCKARVPELPCECHICGLTLISSPHLARSYHHLFPVPPYHE----------DSKERAEEAAGVLIRQPAMRDEVPTSTGSYCFGCLREVS 209
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BLAST of Ec-00_003360.2 vs. uniprot
Match: A0A383WHR9_TETOB (General transcription factor IIH subunit n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WHR9_TETOB)

HSP 1 Score: 133 bits (334), Expect = 5.550e-29
Identity = 64/122 (52.46%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:  646 VLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEI 1011
            VLRR TE T G Y +A +E H  E L+A   PPP PPG+ GA   +LVRMGFP        S  + G    L    Y+CPRC+ +T ELP +C +C LPL+SSPHLARSYHHLFPV  F+E+
Sbjct:  252 VLRRATEATGGTYGVALNEAHLSELLLAHAPPPPAPPGQLGA---ELVRMGFPQRAGGDASSAVFCGELPVLGAGAYTCPRCRARTQELPCKCHVCGLPLISSPHLARSYHHLFPVAAFEEV 370
The following BLAST results are available for this feature:
BLAST of Ec-00_003360.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI2.000e-10976.31General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA2.560e-4942.31General transcription factor IIH subunit n=1 Tax=T... [more]
A0A7S2Y0G9_9STRA4.870e-3352.34Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7J7PM71_9CHLO5.610e-3254.10General transcription factor IIH subunit n=1 Tax=S... [more]
A0A7R9YAF6_9STRA4.240e-3132.20General transcription factor IIH subunit n=1 Tax=P... [more]
A0A2V0NPK1_9CHLO2.540e-3052.46General transcription factor IIH subunit n=1 Tax=R... [more]
A0A2P6V2Z5_9CHLO2.570e-2948.00General transcription factor IIH subunit 2 n=1 Tax... [more]
A0A835YFI7_9CHLO3.820e-2941.28C2H2-type domain-containing protein n=1 Tax=Edapho... [more]
A0A8J4FFS1_9CHLO4.740e-2940.59C2H2-type domain-containing protein n=1 Tax=Volvox... [more]
A0A383WHR9_TETOB5.550e-2952.46General transcription factor IIH subunit n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3338234..3345253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2569
Hectar predicted targeting categoryother localisation
Gene idEc-00_003360.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003360Ec-00_003360Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3338233..3345253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003360.2Ec-00_003360.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3342306..3343877 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003360.2.1Ec-00_003360.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3338234..3338421 +
Ec-00_003360.2.2Ec-00_003360.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3339413..3339592 +
Ec-00_003360.2.3Ec-00_003360.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3340051..3340135 +
Ec-00_003360.2.4Ec-00_003360.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3340885..3340962 +
Ec-00_003360.2.5Ec-00_003360.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3341559..3341675 +
Ec-00_003360.2.6Ec-00_003360.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3342217..3342390 +
Ec-00_003360.2.7Ec-00_003360.2.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3343089..3343217 +
Ec-00_003360.2.8Ec-00_003360.2.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3343636..3345253 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0033605UTR:Ec-00_003360.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3338234..3338421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003360.2CDS:Ec-00_003360.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3342306..3342390 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0033603UTR:Ec-00_003360.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3343878..3345253 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003360.2 ID=Ec-00_003360.2|Name=Ec-00_003360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=152bp
MHAAANAAGPGGGHVRGPCENGISGGDPGRVSEPRLQREQAGAVGFGLQL
PSMQDQDVGAAVGVRNLCAPFGFVASPREVVPPSVSRASVRRNSRRRPSG
SSSSSLSWVCGRHGVGGRGRASDGRRICFFFLLCWVFARLVGVAEVPVPR
M*
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spliced messenger RNA

>Ec-00_003360.2 ID=Ec-00_003360.2|Name=Ec-00_003360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2569bp|location=Sequence derived from alignment at chr_00:3338234..3345253+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ACTGCTGCTGTTGCTGGGGATCCCATGGATGCCATGGACGACCACGATGA
TAATGATGGCGCAGGGTATGCGTGGGAGAAGGGCTTCGAGAGAACGTGGG
AGGGAGTCGAGGAGGACGAGCACGGCAACATCAAGACGCGGGAGGAAGGA
CAGAGACGAAATCGTCGCGTGCGGCGACGAGTGGGGGGGGAGTCCATCAA
GCGGGGGATGATCCGCTACCTCTACCTGGCCATCGACCTGTCGAAGACCA
TGGCGGACGGAGACATGCGGCCGAGCAGGCTGGCGGTGACTCTCCGCATC
GTGCAGGACTTCGTGACCAACTACTTCGACCAGAACCCTCTCAGCCAGCT
CGGCATTCTCGTCACTCGCGAGGGCCGAGCGGAGAAAATAACGGAGCTTT
CGGGCAACCCCAAGGCGCACATGGAGGCGCTAACGAAGGACTCGGACACA
AAGGGCGAAGCTTCCCTCCAAAACTTGCTCGAGATGGCGTGTACGTCGCT
TCGAGCTGTGCCGGAGTACGGCAACCGAGAGGTGGTCGTTATATACAGCA
GCTTGAGCACCTGCGACCCAGGGGACATCCACGAGACGATCGCCAAGCTC
AAGACACACAAAGTGCGGGCCTCGGTCGTTGGACTAGGGGCGGAGATGTT
CGTCCTCCGACGGCTGACGGAGGAGACGAGCGGGGACTACAGCATCGCCG
GGGACGAGAACCACTACCGGGAGTCGCTCATGGCGCAATGCACGCCGCCG
CCAACGCCGCCGGGCCGGGAGGGGGCCATGTTCGCGGACCTTGTGAGAAT
GGGATTTCCGGCGGAGACCCAGGACGTGTTTCCGAGCCTCGGCTACAGCG
GGAACAGGCAGGAGCTGTCGGTTTCGGGCTACAGCTGCCCTCGATGCAAG
ACCAAGACGTCGGAGCTGCCGTCGGAGTGCGTAATCTGTGCGCTCCCTTT
GGTTTCGTCGCCTCACCTCGCGAGGTCGTACCACCATCTGTTTCCCGTGC
CTCAGTTCGACGAAATTCCCGCCGCCGCCCCAGCGGCAGCAGCAGCAGCA
GCCTCAGCTGGGTCTGCGGGCGGCATGGGGTCGGGGGCCGGGGCCGGGCG
AGCGACGGAAGAAGAATCTGCTTCTTCTTCTTACTGTGCTGGGTGTTTGC
GAGACTTGTCGGGGTTGCCGAGGTACCGGTGCCCCGAATGTAGGAGTGCG
TTCTGTCTGGATTGTGACATGTATGTGCATGACTCGCTGCACAATTGCCC
GGGTTGTTGCTGAGCACACTTTGGGTCGATTGGTACCTGGCATGCCAAGC
TTCGAAATTGCGTCGCAAGGGTACCAAGCAGATAGATGCTGCTGGCGCGA
GTGCCATGTGGAGTAGGTTTAGGCCCATGGACCCTTGTCGGAATGTATGC
GAAAACACCGATGCCCACGCTATACTCGATGCTATCGACACGGCTCTACG
GTTGCCACGGCCAGCTAGCCCCCCCCGCCCCCGCCCCCGGACCTGTTTGC
TGCCACGAGTGATCGTGTGTTGAGTTGTCGGTGGTGTGGTCAGGGTGTTG
ATTTGTGGGGCAGAATTTTGGTGATGGTGTTGGTGGATTTTTGGCTCAGG
CGGGCGTGCGGCGGGGGGTGGGGGGTGCGCTATTGTGTTTCTTTGATGGG
CTATTGTGTTTCTTTCTCTGCAAGAGGTACGCTGGTGCAAGCAGCCAACA
CTCCCGTCTCGAACCTGTTTTCAGACCCCCCCGGGGGGTGTTTGTTGTGT
CGCCCCGACCTTGGTTGGCTGTCATGCGCGAAAAAATGGGGGGGACGGAT
TTTGCTGAACCGGTAGGATCCAGAGCACTTGTGCAGAAGAAATGGACAGG
AACGGAAGCAGGTTAATTTTTATTTCCGCTCTAACAACCGTCCCGGTTTT
GCTGACTGAGCCTGTTTGATACCATCCCGGTTTCTGCTGAACACTGATCC
TTGCTTGGTGTCCCTTACAGTACATAGATCCTTACGACCAAGAACGATTT
CGCAATCGCACAACAACGAAAGGGGTCGGGCACAGCCTGTTTTTTTTTTC
CGAGGCGGGACAGATCTGGCGAGACAAGCATATCCTGTTGTGGCGTTCGG
AGATCCCGGAGTTCTGCTCTTCCTTGACCGCTCGAATCCCCTTCGCGTTT
TCGTTGGTTGTCTCCGGTTGAAAGGTGTTGTTGGTTGGGTTGCCTGTGCA
ACATGTTGTGTTCCAAGAGGGCTCGCGGAGCCGAATCCTGGAAGCACTGC
CCCAAACTGGATTAAGAACCAGTTGGGGGGGGGGGGGGGGGGGCTGTTCT
CTACCGCATACGGTGTTTCAACTAGGACTTAGTATAGTATAGTAATACCT
ATACATCGTCTATTGTATAGGATTTAGTACGGATATGCATGTGTATAGGC
ATCATAACTATAAAGTACACAGCACAATAATATTAGTAGTAGTGGGCCCT
GAATATAGTGACGGTTGAATAGTGCCACAATAAGCAGTCCGGTATAGTGC
CGATCAAATCTCAGGACACATGATGATGAGTGTCCATCCACCGCCGCCGT
GTATGAAACGGCACTAGTG
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protein sequence of Ec-00_003360.2

>Ec-00_003360.2 ID=Ec-00_003360.2|Name=Ec-00_003360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=152bp
MHAAANAAGPGGGHVRGPCENGISGGDPGRVSEPRLQREQAGAVGFGLQL
PSMQDQDVGAAVGVRNLCAPFGFVASPREVVPPSVSRASVRRNSRRRPSG
SSSSSLSWVCGRHGVGGRGRASDGRRICFFFLLCWVFARLVGVAEVPVPR
M*
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mRNA from alignment at chr_00:3338234..3345253+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003360.2 ID=Ec-00_003360.2|Name=Ec-00_003360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7020bp|location=Sequence derived from alignment at chr_00:3338234..3345253+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ACTGCTGCTGTTGCTGGGGATCCCATGGATGCCATGGACGACCACGATGA
TAATGATGGCGCAGGGTATGCGTGGGAGAAGGGCTTCGAGAGAACGTGGG
AGGGAGTCGAGGAGGACGAGCACGGCAACATCAAGACGCGGGAGGAAGGA
CAGAGACGAAATCGTCGCGTGCGGCGACGAGTGGGGGGGTGAGGCAAGGC
CTTCGATGTGGTTGGGATACTTCTGATTAGGTTGATCGCGCCGTGCAGAG
ATAGAAGTTATCAGGTTCTGAGTGCCGAAGTGCTTAGAACAACGTGCTTG
TTTTCACTGATTGCATGTCGACTCGAAACAGCAGTCGGTAGGCATGATCT
GCCGATCAATGCAAAAGTATGAACACCGCCACCGTCCACATCATTGGCTC
CATCCGCCGTTCATATAAACGAGTTAACATGCAACACCCGTTAAACTCCA
CCGCGGGCATCGTGGACTCTTGATGGCGTAGAGTAGATGAATGAAGCTAT
TCGTTGTGCATTTGGCACTGTCGAATTGTGTGCGAAGATTAGCGGCGCAA
CTCGCGTGAATTCGTTGGTTTTCGCGCGGGGACAGCGGTAACGCGGCTGT
CTTAACGCGGCTGTCTTGGAATGAATCCATTGCTTACCCTGGACTCTCAT
CTGTGGATGGAGCTAGATTCGCTGTGTGGCGCTGTAAGAAATAAAACACT
AAAACTAAATGCAATCTTCATGATCATTGAAAGTCTACCCGTTCGAGCCA
GTACCACAGGAGGGGTGCGTTGAATGTCGTCAACTATGCAGTGCGCCGGG
AAGAAAGACTGCTATTAGATGCTGAGCTAATGTGAGTCTGTTGAAGCCCA
CAAGCTGGCTGTTTGTTTCAAATGGTTTGCTCCACACTCGAGAACTGGTT
CTGCTCGACGTGGGTTGCACGCTACTCGTGGGCATAAATAATCGCAAAGC
CTCTTTCCGCTAGATGGCCACATACATTTCGTCGAAGGCGGTCAGAATCT
TCTGGACTGCTGCGCCCTTTCAACAGAACCACGTCTGCGGATTTCAAGTC
ACTCAAACGTCGCGTGTATGCACGCAACAGCAGCAGCAGCACTGCTGTTG
TCGCTGAAATTGCATCAACGGCCACCGTTGACGAGATTGGCCCCCCCTGG
GTGATTTTTGAAAACGCCGCCGACCCCAGGGAGTCCATCAAGCGGGGGAT
GATCCGCTACCTCTACCTGGCCATCGACCTGTCGAAGACCATGGCGGACG
GAGACATGCGGCCGAGCAGGCTGGCGGTGACTCTCCGCATCGTGCAGGAC
TTCGTGACCAACTACTTCGACCAGAACCCTCTCAGCCAGCTCGGCATTCT
CGTCACTCGGTACGCGGAGCTGCATGCTTGTACGACAAATACTTTCTGGG
TTGGCGAACCGCCGCTTGGTGTGGTGGTTGTTTTTGTTGTTTTCTCCACA
AAACAAAGCGGTATTGGCATGCTCTTTTCCCTGCTTGTTTGATCGTCGAT
GAATCCTGTCGACAGGTTTCTCTCGCGCTCGATCTTTTCTTTTATTTTCT
GCAGAAGGTTCCTAAGCGCTTTCTGTCACCAGCCAATCCTCTTGAGAAGC
TTGGCCCTACTTGCTCTTGTTGCCGTAGTGGCTGTCACCCGCCAATCCTC
TTGAGAATCTTAGAGCTACTTGCTCTTATTACCGTAAAGGTTGACGAAAC
GAACCATGCCGACAAGTTGTATTGCCTCCCCTCTGCATCCTTTTCTGCCG
CAAACCCTCTCGGCTCTCGCTCGCGGGCACTCGCGTCCCACATGCTTTTG
GGATGCCGCTCACACAGCGAGGGCCGAGCGGAGAAAATAACGGAGCTTTC
GGGCAACCCCAAGGCGCACATGGAGGCGCTAACGAAGGACTCGGACACAA
AGGTGGGGTGTTGAGATCATGGGAAGGGACGGTCGGTACGGTACGGTAGG
GTGGGATGCACGGGTTGATGCGTCCGATACCGAACGGTGTGGCACGAACG
GTTGCATGCATGAACGTTTTTTCTTTGCTATGAGTACATAGCGCGAGCCA
TTCTCTTTTTTGGTTTGTTTGGAGCGGCCCAAAGTGCGAGCATAGATCTG
TCCCATTCGTAGATGGTTGTTTCTTGTAAATTGTACATGCGGGTATATGT
CGTGTTTGGTGTTTCAAACTCTTGAGGGAGCACCTTCGCCGAGATATCGA
ATCTGCGTCTCTTACAGTCCTCACCATGGACTCTCCCGCACCGCTTGCCA
ATGGCATCAACCTCTCCCTACCGGTTGCGGGTGGTCGTCCCCCTTCACTC
GTGTTGCGTTTTGTAATGTCGTGGCATTAGACGGAGCAAAAGATCCCGTC
CGATCAGTATCGCTCATGATGCCTTCGTTCAAGGACGAAGCCTAAACCAT
TTCCCCCTTTCCCAGATTTCCAAGCTGCTCGGCCCACTGGGGGGTCGTGT
TGCCACTCACAGCGAGGAACGTGCGTGTGGTTGGGGATCATCCCGCACCT
AGACCTCGGTAGACCTTCCTCCATCCTTGCTCCTTACCGACCACCTTCGT
CGCAGCGTCGTTTGCGCCTCCCTGGCGGCGGAATCATTTTCCAATGCTTG
TCATCTCTTCCCCTTCCCGGTGTGGCTGCTTTCTGCGTCGTGCGCGTTCA
GGGCGAAGCTTCCCTCCAAAACTTGCTCGAGATGGCGTGTACGTCGCTTC
GAGCTGTGCCGGAGTACGGCAACCGAGAGGTAACACAACAACGATCTAGT
CCGCTAAGTATCTCTACGTACATCCAACACAGACCCGTTGACGCCAAGCG
TTCCAAACAGAGGAGTCGAGAGAGCACGACGGCCGAGTTTTTTGGTTTGG
GGAAACCCCCCCGTGTTGACGCGACCAAGAAAAACGCGCGTTCGGGAGTT
CCAAAGGGGTCTTGGGGCGATCTGCTGTGACCGAAAATTGCGATTCGCGT
GATTGAATTCAAGAGTGCACCCCATCTTCTGGTCAGACACCCTTGGCTTT
GCCCCCCTCGGTTGCAGCAACGGCGCAATGGCAATCACGCTGCCTGGCTC
TCGCCGGGGTAGGGTTTCAGCCACACTTCGTGGGGTGTTGGTGGTTGGTA
TGGTGCTCAGCAAGGCGCCGACCGTGGTATTACGCAGCCGCTCGAACGTT
GCCGGACTTCTTTCACCATTTCCGTTTTTTTTTTCGTTTCTGCAGCCGTG
GGCCCCGGGTGCCTCCCCGCCACCGTTTCCTGCCCCTCAAATCAAGCATA
CCGTGCCCTCTCCCACTTCTTGTGTGCGTGCACTACTACCGTACGAATTA
TATGTCGCGCGATGGGCCGAAAAAGGTGGTCGTTATATACAGCAGCTTGA
GCACCTGCGACCCAGGGGACATCCACGAGACGATCGCCAAGCTCAAGACA
CACAAAGTGCGGGCCTCGGTCGTTGGACTAGGGGCGGAGATGGTGAGGGA
GGGAGTGACCTCTGGGGTGGGGGGGGTGGGGGGGGTGTACTCATAGTCGT
GCATGCTGTAGTCGTTAGACGATCGCCTTCGCACCTCTGGGGTGTGGGAG
TTGAAAATGGAGGGGTTGAAGGTTAGAGAGAGAGATAAGAAGAAAGAGAG
AGGGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAACTGACCGTTTGTTTGTGTCGATGGAGAACAGCCAAT
CAGCCGCGTCTTTGTTGCGCGTTTGGAACATCTTTGGGTAAGGTATCGCA
GTCCTTTTGTCGGGGTTTACCGCCTTCTTTGACTCGTCAGCCTGTTCGGT
CTGTCTGTTCGGCGGTTTGCATCAATTTTCCCAGCGGTCGACGACTCTTT
GGTGCTATTGGTGCTGTTGGTGGTTGTTGTGTTGTTGTTGCCGTTCGGTC
TCTGTCTGTGTGGTGGTCTGCATCAATTTTTACCCCATGGTCGGCGACTT
TTGTTGTTGTTGTCGTCATCGTTTTGTTTACAGTTCGTCCTCCGACGGCT
GACGGAGGAGACGAGCGGGGACTACAGCATCGCCGGGGACGAGAACCACT
ACCGGGAGTCGCTCATGGCGCAATGCACGCCGCCGCCAACGCCGCCGGGC
CGGGAGGGGGCCATGTTCGCGGACCTTGTGAGAATGGGATTTCCGGCGGA
GACCCAGGTAGGTGGGGCGTAGATAACGTACACGTCCAAAGCTATTTTGT
CGTACGAAAATCGCGAAGAGAAAGTGCACGTCTACGTTTTTATTAATAGT
ACCTTGAGGGCAGGTCGAACAATGGTCGACGCTGTATGCGGGCATTAAGA
GTGCGCTCCAGACCTGTCGCAAGTGAGTCCGCATACGCGTTCGTGCCGGG
TATTTTGTTGCCGACAATCCTCGAGGTATACTGGTGGTTGATTGATTCTG
TGCTGTGGACGAGAAGGGGGGAGGGATGGGGAGGTGATGTTGGCGACACC
TTAAACCTTTTTCGTCCGGGTCCCGTGTCATGGACGGAAGACCCCGTAAA
GTGAGTGTGGATCTGCTGCTGCAAGCCCATCGGGAAGCTGGTGGATTCCC
CTGGCCCACCCTCTAATCTCTTCCTGCATGACATCGGAAAGAGCACCGAG
AACATGAGCCGTACTGCTGCTGCTGCTGCTGCTGCTGCTGGTATCGCTGC
TGGTGTTGTTCTGGGACTTTTTTCGTCCAGCGGTACATGAGATTTTTTTT
TTTCGGGATGTTGGTGGGGGAAAGGGTGCGAAATCGCACGCGCCGATTCA
CCAGCAACTGAACGACAAACTAAACCAAGCGGGACACCGAAGCATTCAAG
CTTTCCGCAGACGTGCGTTTTTCTGACTTTGATTTTTTTCTTGTGGACCA
TACAGGACGTGTTTCCGAGCCTCGGCTACAGCGGGAACAGGCAGGAGCTG
TCGGTTTCGGGCTACAGCTGCCCTCGATGCAAGACCAAGACGTCGGAGCT
GCCGTCGGAGTGCGTAATCTGTGCGCTCCCTTTGGTGAGATGTCAGGCAG
GGCCATAGCAGCTACGGTCGTAGTATGTGCACACGGTAGAGAATGCCGAG
AGACAGATAAGAGGGAAGACGGCTTGCTGCATGAAGAGCAGGCGGAAAGA
CCGCAAGCCTGTATTGTGGTGCGACACTGAGAACAGCAGCCCTACACGTA
TGGCATGAGAGGCGAGTGGATGGTCTAAAGGACCTACGTGGGCAAAAGCA
TCGTCTGAGCACGCCCTCTCCCTGTGACATGAAGCACACGCGCCATCCCC
ACACGTTCTCTGTGTGGGTAGAAGTAACCCTCTCCCGTCTTCCACGAGAC
GAATGATCGATGCTCCAGTGCCTAAGGCATGCAATCCTTGACTGAGTCCC
CCGCCTGCCTCTTTTCATCCCTTGCCATTATTGATCTCGTCCTCCTGTTT
AGGTTTCGTCGCCTCACCTCGCGAGGTCGTACCACCATCTGTTTCCCGTG
CCTCAGTTCGACGAAATTCCCGCCGCCGCCCCAGCGGCAGCAGCAGCAGC
AGCCTCAGCTGGGTCTGCGGGCGGCATGGGGTCGGGGGCCGGGGCCGGGC
GAGCGACGGAAGAAGAATCTGCTTCTTCTTCTTACTGTGCTGGGTGTTTG
CGAGACTTGTCGGGGTTGCCGAGGTACCGGTGCCCCGAATGTAGGAGTGC
GTTCTGTCTGGATTGTGACATGTATGTGCATGACTCGCTGCACAATTGCC
CGGGTTGTTGCTGAGCACACTTTGGGTCGATTGGTACCTGGCATGCCAAG
CTTCGAAATTGCGTCGCAAGGGTACCAAGCAGATAGATGCTGCTGGCGCG
AGTGCCATGTGGAGTAGGTTTAGGCCCATGGACCCTTGTCGGAATGTATG
CGAAAACACCGATGCCCACGCTATACTCGATGCTATCGACACGGCTCTAC
GGTTGCCACGGCCAGCTAGCCCCCCCCGCCCCCGCCCCCGGACCTGTTTG
CTGCCACGAGTGATCGTGTGTTGAGTTGTCGGTGGTGTGGTCAGGGTGTT
GATTTGTGGGGCAGAATTTTGGTGATGGTGTTGGTGGATTTTTGGCTCAG
GCGGGCGTGCGGCGGGGGGTGGGGGGTGCGCTATTGTGTTTCTTTGATGG
GCTATTGTGTTTCTTTCTCTGCAAGAGGTACGCTGGTGCAAGCAGCCAAC
ACTCCCGTCTCGAACCTGTTTTCAGACCCCCCCGGGGGGTGTTTGTTGTG
TCGCCCCGACCTTGGTTGGCTGTCATGCGCGAAAAAATGGGGGGGACGGA
TTTTGCTGAACCGGTAGGATCCAGAGCACTTGTGCAGAAGAAATGGACAG
GAACGGAAGCAGGTTAATTTTTATTTCCGCTCTAACAACCGTCCCGGTTT
TGCTGACTGAGCCTGTTTGATACCATCCCGGTTTCTGCTGAACACTGATC
CTTGCTTGGTGTCCCTTACAGTACATAGATCCTTACGACCAAGAACGATT
TCGCAATCGCACAACAACGAAAGGGGTCGGGCACAGCCTGTTTTTTTTTT
CCGAGGCGGGACAGATCTGGCGAGACAAGCATATCCTGTTGTGGCGTTCG
GAGATCCCGGAGTTCTGCTCTTCCTTGACCGCTCGAATCCCCTTCGCGTT
TTCGTTGGTTGTCTCCGGTTGAAAGGTGTTGTTGGTTGGGTTGCCTGTGC
AACATGTTGTGTTCCAAGAGGGCTCGCGGAGCCGAATCCTGGAAGCACTG
CCCCAAACTGGATTAAGAACCAGTTGGGGGGGGGGGGGGGGGGGCTGTTC
TCTACCGCATACGGTGTTTCAACTAGGACTTAGTATAGTATAGTAATACC
TATACATCGTCTATTGTATAGGATTTAGTACGGATATGCATGTGTATAGG
CATCATAACTATAAAGTACACAGCACAATAATATTAGTAGTAGTGGGCCC
TGAATATAGTGACGGTTGAATAGTGCCACAATAAGCAGTCCGGTATAGTG
CCGATCAAATCTCAGGACACATGATGATGAGTGTCCATCCACCGCCGCCG
TGTATGAAACGGCACTAGTG
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Coding sequence (CDS) from alignment at chr_00:3338234..3345253+

>Ec-00_003360.2 ID=Ec-00_003360.2|Name=Ec-00_003360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=456bp|location=Sequence derived from alignment at chr_00:3338234..3345253+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACGCCGCCGCCAACGCCGCCGGGCCGGGAGGGGGCCATGTTCGCGG
ACCTTGTGAGAATGGGATTTCCGGCGGAGACCCAGGACGTGTTTCCGAGC
CTCGGCTACAGCGGGAACAGGCAGGAGCTGTCGGTTTCGGGCTACAGCTG
CCCTCGATGCAAGACCAAGACGTCGGAGCTGCCGTCGGAGTGCGTAATCT
GTGCGCTCCCTTTGGTTTCGTCGCCTCACCTCGCGAGGTCGTACCACCAT
CTGTTTCCCGTGCCTCAGTTCGACGAAATTCCCGCCGCCGCCCCAGCGGC
AGCAGCAGCAGCAGCCTCAGCTGGGTCTGCGGGCGGCATGGGGTCGGGGG
CCGGGGCCGGGCGAGCGACGGAAGAAGAATCTGCTTCTTCTTCTTACTGT
GCTGGGTGTTTGCGAGACTTGTCGGGGTTGCCGAGGTACCGGTGCCCCGA
ATGTAG
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Synonyms
The feature 'Ec-00_003360.2' has the following synonyms
Synonym
Esi0217_0013
Esi_0217_0013