Ec-00_003220.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003220.1
Unique NameEc-00_003220.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length106
Homology
[Close]
BLAST of Ec-00_003220.1 vs. uniprot
Match: D7G258_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G258_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.160e-57
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 MPKTVGDVVLAVAGGGVDESPDMAVTGAVAGNPAVAERGASGKEARHSGDKKGADGVRRESEGAEGGGTGEAGAGDETDGEEDRKRKRQQRALQAFLKGAMRREF 315
            MPKTVGDVVLAVAGGGVDESPDMAVTGAVAGNPAVAERGASGKEARHSGDKKGADGVRRESEGAEGGGTGEAGAGDETDGEEDRKRKRQQRALQAFLKGAMRREF
Sbjct:  135 MPKTVGDVVLAVAGGGVDESPDMAVTGAVAGNPAVAERGASGKEARHSGDKKGADGVRRESEGAEGGGTGEAGAGDETDGEEDRKRKRQQRALQAFLKGAMRREF 239
[Close]
BLAST of Ec-00_003220.1 vs. uniprot
Match: A0A6H5JUH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH9_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 4.510e-41
Identity = 87/99 (87.88%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    1 MPKTVGDVVLAVAGGGVDESPDMAVTGAVAGNPAVAERGASGKEARHSGDKKGADGVRRESEGAEGGGTGEAGAGDETDGEEDRKRKRQQRALQAFLKG 297
            MPKTVGDVVLA AGGGVDESP+MAV GAVAG PAVAERG  GKEA+H GD+KGADGVR+E EGAEGGGTGEAGAGDETDGEEDRKR+RQQRALQAFLKG
Sbjct: 1406 MPKTVGDVVLAGAGGGVDESPEMAVIGAVAGKPAVAERGPLGKEAKHGGDEKGADGVRKEPEGAEGGGTGEAGAGDETDGEEDRKRQRQQRALQAFLKG 1504
The following BLAST results are available for this feature:
BLAST of Ec-00_003220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G258_ECTSI2.160e-57100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JUH9_9PHAE4.510e-4187.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3245940..3246334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length318
Hectar predicted targeting categoryother localisation
Gene idEc-00_003220.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003220Ec-00_003220Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3245940..3246334 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003220.1.1Ec-00_003220.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3245940..3246236 +
Ec-00_003220.1.2Ec-00_003220.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3246314..3246334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003220.1CDS:Ec-00_003220.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3245940..3246236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003220.1Ec-00_003220.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3245940..3246334 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003220.1 ID=Ec-00_003220.1|Name=Ec-00_003220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=106bp
MPKTVGDVVLAVAGGGVDESPDMAVTGAVAGNPAVAERGASGKEARHSGD
KKGADGVRRESEGAEGGGTGEAGAGDETDGEEDRKRKRQQRALQAFLKGA
MRREF*
back to top

spliced messenger RNA

>Ec-00_003220.1 ID=Ec-00_003220.1|Name=Ec-00_003220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=318bp|location=Sequence derived from alignment at chr_00:3245940..3246334+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAGACCGTGGGCGACGTTGTCCTTGCCGTTGCCGGCGGCGGCGT
CGACGAGAGCCCGGACATGGCCGTGACAGGCGCCGTCGCGGGGAATCCCG
CCGTCGCCGAGCGAGGCGCTTCCGGGAAGGAGGCCAGGCACAGCGGTGAC
AAGAAGGGAGCTGACGGGGTGCGAAGAGAGTCAGAAGGAGCGGAGGGTGG
GGGGACAGGCGAAGCCGGTGCTGGAGATGAGACGGACGGGGAGGAGGACA
GAAAGCGTAAGAGGCAACAGAGGGCGCTGCAGGCGTTCCTCAAGGGGGCT
ATGCGAAGAGAGTTCTGA
back to top

protein sequence of Ec-00_003220.1

>Ec-00_003220.1 ID=Ec-00_003220.1|Name=Ec-00_003220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=106bp
MPKTVGDVVLAVAGGGVDESPDMAVTGAVAGNPAVAERGASGKEARHSGD
KKGADGVRRESEGAEGGGTGEAGAGDETDGEEDRKRKRQQRALQAFLKGA
MRREF*
back to top

mRNA from alignment at chr_00:3245940..3246334+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003220.1 ID=Ec-00_003220.1|Name=Ec-00_003220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=395bp|location=Sequence derived from alignment at chr_00:3245940..3246334+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCAAGACCGTGGGCGACGTTGTCCTTGCCGTTGCCGGCGGCGGCGT
CGACGAGAGCCCGGACATGGCCGTGACAGGCGCCGTCGCGGGGAATCCCG
CCGTCGCCGAGCGAGGCGCTTCCGGGAAGGAGGCCAGGCACAGCGGTGAC
AAGAAGGGAGCTGACGGGGTGCGAAGAGAGTCAGAAGGAGCGGAGGGTGG
GGGGACAGGCGAAGCCGGTGCTGGAGATGAGACGGACGGGGAGGAGGACA
GAAAGCGTAAGAGGCAACAGAGGGCGCTGCAGGCGTTCCTCAAGGGGGTG
AGTGGACGCGTGAGTCTTTGGCAAGTGTGATAGGTATTCCCTGGCCGGTG
CTTTGTGAAAAACGTACCCCACAGGCTATGCGAAGAGAGTTCTGA
back to top

Coding sequence (CDS) from alignment at chr_00:3245940..3246334+

>Ec-00_003220.1 ID=Ec-00_003220.1|Name=Ec-00_003220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=318bp|location=Sequence derived from alignment at chr_00:3245940..3246334+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCAAGACCGTGGGCGACGTTGTCCTTGCCGTTGCCGGCGGCGGCGT
CGACGAGAGCCCGGACATGGCCGTGACAGGCGCCGTCGCGGGGAATCCCG
CCGTCGCCGAGCGAGGCGCTTCCGGGAAGGAGGCCAGGCACAGCGGTGAC
AAGAAGGGAGCTGACGGGGTGCGAAGAGAGTCAGAAGGAGCGGAGGGTGG
GGGGACAGGCGAAGCCGGTGCTGGAGATGAGACGGACGGGGAGGAGGACA
GAAAGCGTAAGAGGCAACAGAGGGCGCTGCAGGCGTTCCTCAAGGGGGCT
ATGCGAAGAGAGTTCTGA
back to top
Synonyms
The feature 'Ec-00_003220.1' has the following synonyms
Synonym
Esi1884_0001
Esi_1884_0001