Ec-00_003000.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003000.1
Unique NameEc-00_003000.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length62
Homology
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BLAST of Ec-00_003000.1 vs. uniprot
Match: D7FNC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC5_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 5.270e-38
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 MVAVGEGWSRLTRQCLSSASRERSRPPSEGAVVAMYLRVPLWRCIRRDPVVLCSGLPLALG 183
            MVAVGEGWSRLTRQCLSSASRERSRPPSEGAVVAMYLRVPLWRCIRRDPVVLCSGLPLALG
Sbjct:    1 MVAVGEGWSRLTRQCLSSASRERSRPPSEGAVVAMYLRVPLWRCIRRDPVVLCSGLPLALG 61
The following BLAST results are available for this feature:
BLAST of Ec-00_003000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNC5_ECTSI5.270e-38100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3119238..3119423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length186
Hectar predicted targeting categoryother localisation
Gene idEc-00_003000.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003000Ec-00_003000Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3119238..3119423 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003000.1.1Ec-00_003000.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3119238..3119423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003000.1CDS:Ec-00_003000.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3119238..3119423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003000.1Ec-00_003000.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3119238..3119423 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003000.1 ID=Ec-00_003000.1|Name=Ec-00_003000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=62bp
MVAVGEGWSRLTRQCLSSASRERSRPPSEGAVVAMYLRVPLWRCIRRDPV
VLCSGLPLALG*
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spliced messenger RNA

>Ec-00_003000.1 ID=Ec-00_003000.1|Name=Ec-00_003000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=186bp|location=Sequence derived from alignment at chr_00:3119238..3119423+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCGTAGGAGAAGGTTGGTCGCGTTTGACACGGCAGTGTTTGTC
GTCAGCCAGTCGTGAACGATCTCGGCCCCCCTCTGAGGGTGCCGTGGTGG
CGATGTATCTGAGGGTGCCATTGTGGCGATGTATCCGTCGTGACCCCGTT
GTGTTATGTTCGGGTCTCCCCCTCGCACTCGGTTGA
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protein sequence of Ec-00_003000.1

>Ec-00_003000.1 ID=Ec-00_003000.1|Name=Ec-00_003000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=62bp
MVAVGEGWSRLTRQCLSSASRERSRPPSEGAVVAMYLRVPLWRCIRRDPV
VLCSGLPLALG*
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mRNA from alignment at chr_00:3119238..3119423+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003000.1 ID=Ec-00_003000.1|Name=Ec-00_003000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=186bp|location=Sequence derived from alignment at chr_00:3119238..3119423+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTTGCCGTAGGAGAAGGTTGGTCGCGTTTGACACGGCAGTGTTTGTC
GTCAGCCAGTCGTGAACGATCTCGGCCCCCCTCTGAGGGTGCCGTGGTGG
CGATGTATCTGAGGGTGCCATTGTGGCGATGTATCCGTCGTGACCCCGTT
GTGTTATGTTCGGGTCTCCCCCTCGCACTCGGTTGA
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Coding sequence (CDS) from alignment at chr_00:3119238..3119423+

>Ec-00_003000.1 ID=Ec-00_003000.1|Name=Ec-00_003000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=186bp|location=Sequence derived from alignment at chr_00:3119238..3119423+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTTGCCGTAGGAGAAGGTTGGTCGCGTTTGACACGGCAGTGTTTGTC
GTCAGCCAGTCGTGAACGATCTCGGCCCCCCTCTGAGGGTGCCGTGGTGG
CGATGTATCTGAGGGTGCCATTGTGGCGATGTATCCGTCGTGACCCCGTT
GTGTTATGTTCGGGTCTCCCCCTCGCACTCGGTTGA
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Synonyms
The feature 'Ec-00_003000.1' has the following synonyms
Synonym
Esi1788_0001
Esi_1788_0001