Ec-00_002920.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002920.1
Unique NameEc-00_002920.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length218
Homology
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: D7FN71_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN71_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 2.450e-72
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1 
Query:    1 MMPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKANPLFAVGQCNSAPVGYSGNRRAVRRGAPADTAARDRSLYPETKETTDS 651
            MMPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKANPLFAVGQCNSAPVGYSGNRRAVRRGAPADTAARDRSLYPETKETTDS
Sbjct:    1 MMPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKANPLFAVGQCNSAPVGYSGNRRAVRRGAPADTAARDRSLYPETKETTDS 217
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: A0A6H5JKV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV7_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.300e-35
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 MMPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGAN 213
            MMPTPPK  RGPLNELHQAA+RG  ERINS+LTRGVININQGDP GRTPLMCAAQKGC RVVGILLNKGAN
Sbjct:    1 MMPTPPKLPRGPLNELHQAAMRGFTERINSVLTRGVININQGDPTGRTPLMCAAQKGCMRVVGILLNKGAN 71
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.900e-17
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 MMPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACDM 234
            +MP   KW RGP NELH AA  GS +R  ++L+ G+ININQGDP G TPLM A+Q+G  R+V IL+ +GAN+ I  D+
Sbjct:    2 IMPAQEKWPRGPKNELHFAADTGSTQRTAAILSSGLININQGDPDGWTPLMVASQRGYTRIVRILVKEGANVLIVADL 79
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.570e-16
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    4 MPTPPK---WSRGPLNELHQAAIRGSAERINSLLT-RGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACDM 234
            MP PP    W RGP+NELH AA+ GSAER  +LL+ R  I++NQGD AG TPLM A   G PRVV ILLN GANMSI  D+
Sbjct:    1 MPPPPPTQGWPRGPMNELHLAAMDGSAERALALLSSRDPIDVNQGDSAGCTPLMLATTNGHPRVVRILLNHGANMSIMDDV 81
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: D7G1Y7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.760e-15
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   19 KWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIA 225
            +W RGP NELH+AA  GSA+R  +LL+ G +++NQGDPAG TPLM A+ +G   +V ILL+ GAN S A
Sbjct:    4 QWPRGPRNELHEAAHFGSADRTRALLSSGAVDVNQGDPAGFTPLMLASMEGQSHIVKILLDNGANSSTA 72
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: D8LNF8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.820e-12
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   22 WSRGPLNELHQAAIRGSAERINSLL-TRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACD 231
            W RGP N+LH+AA  GS ER+ +LL +R  I+INQG   G TPLM AA +G  RVV IL NKGAN+S+  D
Sbjct:   11 WPRGPQNDLHRAANDGSIERVVALLASRPSIDINQGAEYGWTPLMLAAWRGSSRVVRILPNKGANVSVVAD 81
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.240e-11
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   22 WSRGPLNELHQAAIRGSAERINSLL-TRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACD 231
            W RGP N+LH+AA  GS ER+ +LL +R  I I+ G   G TPLM AA +G  RVV ILLNKGAN+S+  +
Sbjct:   11 WPRGPQNDLHRAANDGSVERVVALLASRSSIAIDAGAEYGWTPLMLAAWRGSSRVVRILLNKGANVSVVAE 81
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: D7FNJ3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ3_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.830e-10
Identity = 40/94 (42.55%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:   13 PPKWSRGPLNELHQAAIRGSAERINSLLT---------------------RGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSIACD 231
            PPKW RGP NELH AA  G      +LL+                      G I+IN+GD  G TPL+ AAQ G PRVV +LL  GAN+++  D
Sbjct:   10 PPKWPRGPTNELHNAAGSGCIPHTAALLSGDQEFSHKGHGCCAKHKTGVSAGEIDINEGDETGTTPLIYAAQGGYPRVVRMLLQAGANVAVEAD 103
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.190e-9
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    4 MPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANM 216
            +P P +W  GP N L  AA  GS +   +LL  G  +I+QG+  G TPLM A++ G PR+V +LLNKGA +
Sbjct:    4 VPLPQQWPHGPSNPLQAAADCGSFKTAANLLASGAFDIDQGNEVGWTPLMMASRGGYPRIVRMLLNKGAQV 74
[Close]
BLAST of Ec-00_002920.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.750e-8
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    4 MPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQKGCPRVVGILLNKGANMSI 222
            +P P +  RGP N LH AA  GS E   ++L  G  +I+QG+  G T LM A++ G  R+VG++LNKGA +SI
Sbjct:    4 VPRPQQRPRGPSNRLHAAAECGSFEATATVLASGAFDIDQGNEYGWTALMLASRGGYARIVGMILNKGAQVSI 76
The following BLAST results are available for this feature:
BLAST of Ec-00_002920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FN71_ECTSI2.450e-72100.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JKV7_9PHAE1.300e-3588.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I8_ECTSI3.900e-1755.13EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FY91_ECTSI1.570e-1661.73EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G1Y7_ECTSI1.760e-1556.52EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LNF8_ECTSI1.820e-1257.75EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JL33_9PHAE5.240e-1154.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNJ3_ECTSI4.830e-1042.55EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KQV0_9PHAE7.190e-946.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA9_9PHAE1.750e-846.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3071688..3072341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.3
Seed ortholog evalue7.1e-57
Seed eggNOG ortholog2880.D7FN71
Length654
Hectar predicted targeting categoryother localisation
Gene idEc-00_002920.1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002920Ec-00_002920Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3071688..3072341 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002920.1.1Ec-00_002920.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3071688..3072341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002920.1CDS:Ec-00_002920.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3071688..3072341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002920.1Ec-00_002920.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3071688..3072341 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002920.1 ID=Ec-00_002920.1|Name=Ec-00_002920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=218bp
MMPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPL
MCAAQKGCPRVVGILLNKGANMSIACDMGFTALLISAQIGHVAVTTRLLT
AGADLEQADNQGFRVLHMASSNGHSEVMKILMNAGANVDCRWFGGETPLY
LAASKGHVGAMRLLVVAKANPLFAVGQCNSAPVGYSGNRRAVRRGAPADT
AARDRSLYPETKETTDS*
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spliced messenger RNA

>Ec-00_002920.1 ID=Ec-00_002920.1|Name=Ec-00_002920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=654bp|location=Sequence derived from alignment at chr_00:3071688..3072341- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCTACCCCACCGAAATGGTCTCGAGGCCCATTGAACGAACTCCA
CCAGGCCGCAATTCGTGGTTCTGCCGAGCGTATCAATTCCCTGCTAACCA
GGGGCGTCATAAACATCAACCAAGGCGATCCGGCGGGCCGGACTCCCCTC
ATGTGCGCCGCCCAAAAGGGCTGCCCGCGCGTTGTCGGCATCCTGCTGAA
CAAGGGAGCCAACATGTCGATAGCGTGTGACATGGGATTTACTGCCTTGC
TCATTTCCGCTCAAATTGGCCACGTGGCGGTGACTACAAGATTGCTGACA
GCCGGTGCCGACCTCGAACAAGCCGACAACCAAGGCTTCAGAGTGCTACA
TATGGCTAGCTCAAACGGGCACTCCGAGGTGATGAAGATACTGATGAATG
CGGGCGCGAACGTTGACTGCCGCTGGTTCGGTGGAGAGACACCGCTATAC
CTGGCGGCGTCGAAGGGACACGTGGGCGCGATGCGGCTGCTCGTTGTTGC
GAAAGCGAACCCGTTGTTTGCTGTAGGACAGTGCAACTCAGCTCCCGTTG
GATATAGCGGCAATAGGAGGGCAGTCAGACGCGGTGCACCAGCTGATACA
GCAGCTAGGGATCGAAGTCTGTACCCCGAGACAAAAGAAACAACGGATAG
CTGA
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protein sequence of Ec-00_002920.1

>Ec-00_002920.1 ID=Ec-00_002920.1|Name=Ec-00_002920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=218bp
MMPTPPKWSRGPLNELHQAAIRGSAERINSLLTRGVININQGDPAGRTPL
MCAAQKGCPRVVGILLNKGANMSIACDMGFTALLISAQIGHVAVTTRLLT
AGADLEQADNQGFRVLHMASSNGHSEVMKILMNAGANVDCRWFGGETPLY
LAASKGHVGAMRLLVVAKANPLFAVGQCNSAPVGYSGNRRAVRRGAPADT
AARDRSLYPETKETTDS*
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mRNA from alignment at chr_00:3071688..3072341-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002920.1 ID=Ec-00_002920.1|Name=Ec-00_002920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=654bp|location=Sequence derived from alignment at chr_00:3071688..3072341- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGCCTACCCCACCGAAATGGTCTCGAGGCCCATTGAACGAACTCCA
CCAGGCCGCAATTCGTGGTTCTGCCGAGCGTATCAATTCCCTGCTAACCA
GGGGCGTCATAAACATCAACCAAGGCGATCCGGCGGGCCGGACTCCCCTC
ATGTGCGCCGCCCAAAAGGGCTGCCCGCGCGTTGTCGGCATCCTGCTGAA
CAAGGGAGCCAACATGTCGATAGCGTGTGACATGGGATTTACTGCCTTGC
TCATTTCCGCTCAAATTGGCCACGTGGCGGTGACTACAAGATTGCTGACA
GCCGGTGCCGACCTCGAACAAGCCGACAACCAAGGCTTCAGAGTGCTACA
TATGGCTAGCTCAAACGGGCACTCCGAGGTGATGAAGATACTGATGAATG
CGGGCGCGAACGTTGACTGCCGCTGGTTCGGTGGAGAGACACCGCTATAC
CTGGCGGCGTCGAAGGGACACGTGGGCGCGATGCGGCTGCTCGTTGTTGC
GAAAGCGAACCCGTTGTTTGCTGTAGGACAGTGCAACTCAGCTCCCGTTG
GATATAGCGGCAATAGGAGGGCAGTCAGACGCGGTGCACCAGCTGATACA
GCAGCTAGGGATCGAAGTCTGTACCCCGAGACAAAAGAAACAACGGATAG
CTGA
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Coding sequence (CDS) from alignment at chr_00:3071688..3072341-

>Ec-00_002920.1 ID=Ec-00_002920.1|Name=Ec-00_002920.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=654bp|location=Sequence derived from alignment at chr_00:3071688..3072341- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGCCTACCCCACCGAAATGGTCTCGAGGCCCATTGAACGAACTCCA
CCAGGCCGCAATTCGTGGTTCTGCCGAGCGTATCAATTCCCTGCTAACCA
GGGGCGTCATAAACATCAACCAAGGCGATCCGGCGGGCCGGACTCCCCTC
ATGTGCGCCGCCCAAAAGGGCTGCCCGCGCGTTGTCGGCATCCTGCTGAA
CAAGGGAGCCAACATGTCGATAGCGTGTGACATGGGATTTACTGCCTTGC
TCATTTCCGCTCAAATTGGCCACGTGGCGGTGACTACAAGATTGCTGACA
GCCGGTGCCGACCTCGAACAAGCCGACAACCAAGGCTTCAGAGTGCTACA
TATGGCTAGCTCAAACGGGCACTCCGAGGTGATGAAGATACTGATGAATG
CGGGCGCGAACGTTGACTGCCGCTGGTTCGGTGGAGAGACACCGCTATAC
CTGGCGGCGTCGAAGGGACACGTGGGCGCGATGCGGCTGCTCGTTGTTGC
GAAAGCGAACCCGTTGTTTGCTGTAGGACAGTGCAACTCAGCTCCCGTTG
GATATAGCGGCAATAGGAGGGCAGTCAGACGCGGTGCACCAGCTGATACA
GCAGCTAGGGATCGAAGTCTGTACCCCGAGACAAAAGAAACAACGGATAG
CTGA
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Synonyms
The feature 'Ec-00_002920.1' has the following synonyms
Synonym
Esi1750_0001
Esi_1750_0001