Ec-00_002910.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002910.1
Unique NameEc-00_002910.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length172
Homology
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: D7FSC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC3_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 4.820e-113
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 3 
Query:  273 FMTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR 791
            FMTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR
Sbjct:  223 FMTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR 395
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: D7FN39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN39_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 1.190e-92
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 3 
Query:  276 MTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNAR 674
            MTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNAR
Sbjct:    1 MTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNAR 133
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: A0A836CP13_9STRA (Glyco_trans_2-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP13_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.440e-27
Identity = 81/213 (38.03%), Postives = 110/213 (51.64%), Query Frame = 3 
Query:  198 NPRYPPTG-PLAACPFQCGQ-PLLCPAFMTGSRMGSFKRASGMED--------DDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTST------------FPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGL 770
            +P  PP G P A  P   G   +      + +R+  F++ASG++          D D N F  ++   +PQ     PSA ++R + V N  +   YL WR T T            F P  G          W W F++ E  L IA+W+G  QRLF VQR+++TMDDI   DD VGYN+RV ILLPT GE L+VV KAL+G +S R WD+ +
Sbjct:  268 SPSRPPMGAPRATVPGDHGAININAKRLPSQTRITEFQKASGVKAYGVMDGGVSDVDPN-FLTKMNKPDPQGMTPLPSAFVIRAIVVLNICVSCAYLWWRVTRTIFQIDDYFFGIPFLPVQG----------WAWAFYAVEICLTIAIWIGHTQRLFAVQRVRLTMDDIVREDDSVGYNSRVAILLPTNGEKLDVVMKALLGVVSLRGWDTSV 469
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: D7FSC4_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC4_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.310e-25
Identity = 67/141 (47.52%), Postives = 81/141 (57.45%), Query Frame = 3 
Query:  348 FFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTST--FPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDS 764
            F  R    NPQ K  F S+ L+R + V N   G  Y+ WR+  T   PP   +W           +FF  E FL  A+W+G +QRLF VQRI+ TMD I S+D  VG NA V ILLPTAGE L+VV K L+GA SQR W S
Sbjct:   72 FVQRGEKINPQTKESFSSSFLIRGVVVLNVASGFTYMVWRFLKTQDVPPEY-KWXXX--------VFFMVEVFLLFAIWLGHSQRLFAVQRIRTTMDQIVSIDPAVGANAVVAILLPTAGERLDVVLKCLLGASSQRSWPS 203
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: A0A835ZCE1_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.380e-25
Identity = 67/175 (38.29%), Postives = 98/175 (56.00%), Query Frame = 3 
Query:  273 FMTGSRMGSFKRASGMEDDDQDSNLFFD------RVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLY----WWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSG 767
            +++  R+ SF  A+G+   +     + D      + +  NPQ      S  L+R++  AN G   LYL+WR TST   T+  + Y   K +    W W+F+  E  L I + +G  QR+FP++R  V M+D+   DD VGYNARV ILLP+AGE L++V  AL+GA+SQ  W  G
Sbjct:  170 WLSRGRVNSFAAAAGLRPSEAAGGAYADDAVVLKQQFKPNPQAFFALGSTPLLRLIMAANVGFSALYLYWRATSTIT-TIDTYFYNI-KYFPVQIWAWVFYGVEICLTIGILIGHTQRMFPIKRAIVAMEDLVREDDCVGYNARVAILLPSAGERLDIVMLALLGAMSQSTWRGG 342
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: A0A835YVP7_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.490e-17
Identity = 55/135 (40.74%), Postives = 72/135 (53.33%), Query Frame = 3 
Query:  372 NPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKL---YWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSG 767
            +PQ      S  L+R + +AN    VLYL WR TST   T+  + +    L    W W F++ E  L I +W+G +QRLF V                  YNARVCILLPTAGE L++V  AL+G +SQR+W  G
Sbjct:   10 DPQRTTPMSSHLLIRCVILANLAFSVLYLWWRVTSTIT-TINSYFFGIKALPVQAWGWTFYAVEICLTIGIWIGHSQRLFAVS----------------SYNARVCILLPTAGERLDIVMLALLGCISQRMWACG 127
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: A0A835YSM9_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.780e-17
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 3 
Query:  276 MTGSRMGSFKRASGM-------EDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGL 770
            M+ +R+  +++ASG+       +    D   F  +V   +PQ     PSA ++R + + N G+ + YL+WR T T       +  ++W                            PV RIK+TMD++   DD VGYN+RV ILLPT GENL+VV KA++G +S R WD+ +
Sbjct:   71 MSATRIVEYQKASGVKATGLAGDGGPHDEPNFLTKVDKPDPQTMTPLPSAMVIRAIVIINIGVSLAYLYWRVTHTITNIDSYFFGITW---------------------------LPV-RIKMTMDELVREDDSVGYNSRVAILLPTNGENLDVVMKAMLGCISLRGWDASV 214
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: A0A835YIK8_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.170e-12
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 3 
Query:  528 WWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWDSGLPGSQTLR 791
            W ++FF AE  L + + V    R FP+ R +VTMD++   D Q G + +V ILLPTAGE L+V+ +AL G L  RLW S      TLR
Sbjct:   27 WGYIFFGAEVLLIVGLLVSHVSRAFPIHRERVTMDELVDSDPQTG-DLKVAILLPTAGEKLQVMLQALFGVLQLRLWSSSRARCDTLR 113
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: A0A835Z7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.420e-9
Identity = 58/214 (27.10%), Postives = 87/214 (40.65%), Query Frame = 3 
Query:  198 NPRYPPTGPLAACPFQCGQPLLCPAFMTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDITSVDD--------------------------QVGYNARVCILLPTAGENLEVVFKALVGALSQRLWD 761
            N  +PP  PL   PF     LL PA +  +    F  A+        +      V      +  L P+A L+R +   N  LG  YL WR T + P   G     ++     +++   E  L +++W+    RL P  R  + +DD+    +                           +   ARV ILLPTAGE L V+ +AL+G  SQ+LW+
Sbjct:  140 NVHWPPR-PLPLGPFGAFGTLLRPASVPPNASALFGFAAA----GPTAGALASLVMLVAGLQVTLHPTAGLIRAVFACNLVLGARYLLWRCTKSLPLEDGSPAATAYA----YIYLLCEAILVMSIWMSHCTRLLPAVRPIIRVDDLIEASNALDTLQMANAADAGSRAPSEQQPGLISIAEEARVAILLPTAGEGLPVLLRALLGCFSQKLWE 344
[Close]
BLAST of Ec-00_002910.1 vs. uniprot
Match: A0A835Z722_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z722_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.600e-7
Identity = 45/176 (25.57%), Postives = 71/176 (40.34%), Query Frame = 3 
Query:  360 VYCANPQEKRLFPSAHLVRVLAVANAGLGVLYLHWRYTSTFP-----PTVGRWDYMSWKLYWWWLFFSAEFFLAIAVWVGLAQRLFPVQRIKVTMDDI-------------------------------------TSVDDQVGYNARVCILLPTAGENLEVVFKALVGALSQRLWD 761
            +   +P +  + P+A ++R +   N  LG  YL WR T + P     P    + Y         L+   E  L +++W+    RL P  R  + +DD+                                     T +D  +   ARV IL+PTAGE L ++  AL+G  SQ+LW+
Sbjct:   27 IRAPDPAQVTMHPTAIVIRAIFACNLVLGARYLVWRCTKSLPLEGASPVATGYAY---------LYLICEVILVVSIWMSHCTRLLPAVRPVIRVDDLVAAAKALADWRKQTAAPKLETRLPGSGCFVNTSGMLPTPID--IAEEARVAILVPTAGEGLPMLLHALLGCFSQKLWE 191
The following BLAST results are available for this feature:
BLAST of Ec-00_002910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FSC3_ECTSI4.820e-113100.00Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
D7FN39_ECTSI1.190e-92100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CP13_9STRA1.440e-2738.03Glyco_trans_2-like domain-containing protein n=1 T... [more]
D7FSC4_ECTSI1.310e-2547.52Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A835ZCE1_9STRA1.380e-2538.29Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YVP7_9STRA1.490e-1740.74Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YSM9_9STRA2.780e-1733.14Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YIK8_9STRA6.170e-1245.45Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835Z7S9_9STRA1.420e-927.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z722_9STRA1.600e-725.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3066402..3068511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue4.1e-23
Seed eggNOG ortholog2880.D7FSC4
Length793
KEGG rclassRC00005
KEGG koko:K00694,ko:K10999,ko:K20924
KEGG TC4.D.3.1.2,4.D.3.1.4,4.D.3.1.5,4.D.3.1.6,4.D.3.1.7,4.D.3.1.9
KEGG ReactionR02889
KEGG Pathwayko00500,ko01100,ko02026,map00500,map01100,map02026
Hectar predicted targeting categoryother localisation
Gene idEc-00_002910.1
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005938,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009653,GO:0009987,GO:0010927,GO:0016020,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016759,GO:0016760,GO:0022607,GO:0030154,GO:0030243,GO:0030244,GO:0030435,GO:0030587,GO:0031150,GO:0031154,GO:0032502,GO:0032989,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0042244,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0045177,GO:0045179,GO:0045229,GO:0046527,GO:0048646,GO:0048856,GO:0048869,GO:0051273,GO:0051274,GO:0051703,GO:0051704,GO:0070590,GO:0070726,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090702,GO:0099120,GO:0099568,GO:0099738,GO:1901576
EggNOG free text desc.Cellulose synthase
EggNOG OGs2QQSH@2759,COG1215@1
EC2.4.1.12
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002910Ec-00_002910Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3066402..3068511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002910.1Ec-00_002910.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3066403..3068235 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002910.1.4Ec-00_002910.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3066402..3066520 -
Ec-00_002910.1.3Ec-00_002910.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3066785..3066996 -
Ec-00_002910.1.2Ec-00_002910.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3067539..3067619 -
Ec-00_002910.1.1Ec-00_002910.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3068131..3068511 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0029103UTR:Ec-00_002910.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3066402..3066402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002910.1CDS:Ec-00_002910.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3066403..3066520 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0029105UTR:Ec-00_002910.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3068236..3068511 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002910.1 ID=Ec-00_002910.1|Name=Ec-00_002910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=172bp
MTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLA
VANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAV
WVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFK
ALVGALSQRLWDSGLPGSQTLR
back to top

spliced messenger RNA

>Ec-00_002910.1 ID=Ec-00_002910.1|Name=Ec-00_002910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=793bp|location=Sequence derived from alignment at chr_00:3066402..3068511- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CAAGCCGTAACGTGCTGACTATTGACTACTTCTGTATCGGCTGCTCCTTT
CTCCTTTCATGAACTCGTTGGATGTTTGGCTGTCTGTCCCGTTCCTCAAC
ACACATGCTCACACCTCGTACCACAAACCACCCAACCCAACCCTACGCGA
CGAAGCAGAAGCAGCCCTAGTAGGCAGTCAGAGGTCTCCGGGCTTCAAAC
CCCCGGTACCCCCCAACCGGGCCCCTGGCAGCGTGCCCCTTCCAGTGTGG
GCAGCCGCTTCTCTGTCCGGCGTTTCATGACGGGGTCGAGGATGGGGTCC
TTCAAGAGGGCCTCGGGCATGGAGGATGATGACCAAGACTCGAACCTCTT
CTTCGACCGGGTCTACTGCGCCAACCCGCAGGAAAAGAGGCTCTTCCCGT
CGGCCCACCTGGTCCGGGTTCTCGCCGTCGCTAACGCTGGCCTGGGCGTT
CTTTACCTGCACTGGCGGTACACGAGCACCTTCCCGCCCACGGTCGGCCG
TTGGGATTACATGTCTTGGAAGCTGTACTGGTGGTGGCTGTTCTTCTCGG
CAGAGTTTTTCCTGGCCATCGCCGTGTGGGTCGGCCTGGCTCAACGTCTC
TTCCCGGTGCAGCGGATCAAGGTCACCATGGACGACATCACGTCCGTCGA
CGATCAAGTCGGCTACAACGCACGGGTGTGCATCCTCCTCCCCACGGCTG
GAGAGAACCTAGAGGTTGTGTTCAAGGCGCTCGTAGGAGCCCTCTCGCAG
CGTCTCTGGGACTCTGGCCTGCCCGGGAGCCAGACTCTTCGCG
back to top

protein sequence of Ec-00_002910.1

>Ec-00_002910.1 ID=Ec-00_002910.1|Name=Ec-00_002910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=172bp
MTGSRMGSFKRASGMEDDDQDSNLFFDRVYCANPQEKRLFPSAHLVRVLA
VANAGLGVLYLHWRYTSTFPPTVGRWDYMSWKLYWWWLFFSAEFFLAIAV
WVGLAQRLFPVQRIKVTMDDITSVDDQVGYNARVCILLPTAGENLEVVFK
ALVGALSQRLWDSGLPGSQTLR
back to top

mRNA from alignment at chr_00:3066402..3068511-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002910.1 ID=Ec-00_002910.1|Name=Ec-00_002910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2110bp|location=Sequence derived from alignment at chr_00:3066402..3068511- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CAAGCCGTAACGTGCTGACTATTGACTACTTCTGTATCGGCTGCTCCTTT
CTCCTTTCATGAACTCGTTGGATGTTTGGCTGTCTGTCCCGTTCCTCAAC
ACACATGCTCACACCTCGTACCACAAACCACCCAACCCAACCCTACGCGA
CGAAGCAGAAGCAGCCCTAGTAGGCAGTCAGAGGTCTCCGGGCTTCAAAC
CCCCGGTACCCCCCAACCGGGCCCCTGGCAGCGTGCCCCTTCCAGTGTGG
GCAGCCGCTTCTCTGTCCGGCGTTTCATGACGGGGTCGAGGATGGGGTCC
TTCAAGAGGGCCTCGGGCATGGAGGATGATGACCAAGACTCGAACCTCTT
CTTCGACCGGGTCTACTGCGCCAACCCGCAGGTACGCTACGTTACACGGA
GGTCGCGGGTCCTGAAATACCGCGGTTATTATCACTTATGACTTGATTTG
GCTACCTATACTAAACTACGTATTCCCACACTCAATAGTGCGACGTCCCG
CTGCCCTGTTGTTTTTGCTTTTCGCTACACCGTCGTATATCGGGACCATA
GCGGTATGGTGTACCCCCCTTGTTTCTCTTCTCGCGTGCTGGCGTTTGGC
AGTGGTTTGTTGGTTGCCTTGCCCGTCTTGCGGCGGCCAATCCCATCGCG
CCTAAAAGGAGTTGGTGGAACCCTGTCCAGTGTGCTTTGTTTCTGTCGGT
CTCATTCGTCGAGTGTTACAGTATCGGACAGCACCAATTGCAGATTGGTC
TCTTCAGGTTTGAACGAGTCGCACCCACCAAAACATGCAGCTCACAATTT
ATGTTACTATCGATGGCTGAGTCGTCTGTTTTTTTTTCCCGCGCCACCCC
GTGTTTTTGTGTTCCACACACACCCTCGTGACGAAACTTTAGGAAAAGAG
GCTCTTCCCGTCGGCCCACCTGGTCCGGGTTCTCGCCGTCGCTAACGCTG
GCCTGGGCGTTCTTTACCTGCACGTGAGTTATGATACGTACACGGTAATG
GCGTATGTACTCGTATGTAGGAGCGTTGCTTCTCGTGCATGAGGCTGCCA
CCGCAGGTAATCGCATACCCTATCATGGCCTCGCCCAACCTTACCTGCAT
TCCACCGTTGTTGGATGATGTGCCGTGTTGCAAAGCGTCTCGTGAAACGT
GGTGCGTAGGGCTGCGCACGCATTGGTGAAGCGCTTGTAGTGGTGTGCCA
ACATGTTTCCGTTCTTGTGTTGCATTTTGCTTGTCGAAGGCACCGGACTG
CACCTCGTAAACCTTGCACCTCAGTGGCCTCGCATGACCTCTCTCCAAGT
CGACTGATGTGATACTGTCAAGAGGCCATCTGTTGACCCACACTTACCAG
TATCAACTGGCGTGGGTGGTTCTGTACTCCACGGCTGGCGCCGGTGCGGC
TACTGCTGTACCTACCATAGCTGCTATGCACACATGTTCACGTCTGATGC
GTTGTGTGTCTCTGTCGTGCTTGCTATCGCCGATCCGCTTCCTCTGTCAT
GTCTTGTCATTTCAGTGGCGGTACACGAGCACCTTCCCGCCCACGGTCGG
CCGTTGGGATTACATGTCTTGGAAGCTGTACTGGTGGTGGCTGTTCTTCT
CGGCAGAGTTTTTCCTGGCCATCGCCGTGTGGGTCGGCCTGGCTCAACGT
CTCTTCCCGGTGCAGCGGATCAAGGTCACCATGGACGACATCACGTCCGT
CGACGATCAAGTCGGCTACAACGCACGGTAAGCGAGACGTCCACGCCACA
ACACATGACATCACATGACATCACACATCACACACCCTATCCAATAGCAC
TACAAGTATAATATCCAATAGCAAGAATTGCAGTATACAGGGAGTGGCAC
CTTGCGAACAGCGCTCTTCCGCTCGCATTCATATTTACGGGGGAAGACTC
CCGGCAGGCGTCATCGCCATCCTGACGCTGTCGTGTCGTGTCGTGTCGTG
CCGTGCCATCACGTTTTCTCAACGAATGCCTTGACGTACAGGGTGTGCAT
CCTCCTCCCCACGGCTGGAGAGAACCTAGAGGTTGTGTTCAAGGCGCTCG
TAGGAGCCCTCTCGCAGCGTCTCTGGGACTCTGGCCTGCCCGGGAGCCAG
ACTCTTCGCG
back to top

Coding sequence (CDS) from alignment at chr_00:3066402..3068511-

>Ec-00_002910.1 ID=Ec-00_002910.1|Name=Ec-00_002910.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=516bp|location=Sequence derived from alignment at chr_00:3066402..3068511- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGGGGTCGAGGATGGGGTCCTTCAAGAGGGCCTCGGGCATGGAGGA
TGATGACCAAGACTCGAACCTCTTCTTCGACCGGGTCTACTGCGCCAACC
CGCAGGAAAAGAGGCTCTTCCCGTCGGCCCACCTGGTCCGGGTTCTCGCC
GTCGCTAACGCTGGCCTGGGCGTTCTTTACCTGCACTGGCGGTACACGAG
CACCTTCCCGCCCACGGTCGGCCGTTGGGATTACATGTCTTGGAAGCTGT
ACTGGTGGTGGCTGTTCTTCTCGGCAGAGTTTTTCCTGGCCATCGCCGTG
TGGGTCGGCCTGGCTCAACGTCTCTTCCCGGTGCAGCGGATCAAGGTCAC
CATGGACGACATCACGTCCGTCGACGATCAAGTCGGCTACAACGCACGGG
TGTGCATCCTCCTCCCCACGGCTGGAGAGAACCTAGAGGTTGTGTTCAAG
GCGCTCGTAGGAGCCCTCTCGCAGCGTCTCTGGGACTCTGGCCTGCCCGG
GAGCCAGACTCTTCGC
back to top
Synonyms
The feature 'Ec-00_002910.1' has the following synonyms
Synonym
Esi1748_0001
Esi_1748_0001