Ec-00_002790.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002790.1
Unique NameEc-00_002790.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length195
Homology
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BLAST of Ec-00_002790.1 vs. uniprot
Match: D7FM96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM96_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 1.140e-140
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 
Query:    1 MSCHRSYCAHGDPSADEEEEDTVVLVVDPLTCLEREKGISSDRGEHTEEEGIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEVMAHMGAPHTFTASGPGYSTEFLMEMFVLAATFNIEVGGTTGLMSKKQILNADVVGRFPYSPPRSSQSGVHSHSWSNLFSSPEYGYVPTEGISSRGPGPAV 582
            MSCHRSYCAHGDPSADEEEEDTVVLVVDPLTCLEREKGISSDRGEHTEEEGIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEVMAHMGAPHTFTASGPGYSTEFLMEMFVLAATFNIEVGGTTGLMSKKQILNADVVGRFPYSPPRSSQSGVHSHSWSNLFSSPEYGYVPTEGISSRGPGPAV
Sbjct:    1 MSCHRSYCAHGDPSADEEEEDTVVLVVDPLTCLEREKGISSDRGEHTEEEGIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEVMAHMGAPHTFTASGPGYSTEFLMEMFVLAATFNIEVGGTTGLMSKKQILNADVVGRFPYSPPRSSQSGVHSHSWSNLFSSPEYGYVPTEGISSRGPGPAV 194
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BLAST of Ec-00_002790.1 vs. uniprot
Match: D7G1D3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D3_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 4.340e-44
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:   40 SADEEEEDTVVLVVDPLTCLEREKGISSDRGEHTEEEGIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEVMAH 291
            SADEEEEDTVVLVVDPLTCLEREKGISSDRGEHTEEEGIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEE   H
Sbjct:  785 SADEEEEDTVVLVVDPLTCLEREKGISSDRGEHTEEEGIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEASIH 868
The following BLAST results are available for this feature:
BLAST of Ec-00_002790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM96_ECTSI1.140e-140100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1D3_ECTSI4.340e-4496.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2940687..2942482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length585
Hectar predicted targeting categoryother localisation
Gene idEc-00_002790.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002790Ec-00_002790Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2940687..2942482 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002790.1.3Ec-00_002790.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2940687..2940992 -
Ec-00_002790.1.2Ec-00_002790.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2941479..2941577 -
Ec-00_002790.1.1Ec-00_002790.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2942303..2942482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002790.1CDS:Ec-00_002790.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2940687..2940992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002790.1Ec-00_002790.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2940687..2942482 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002790.1 ID=Ec-00_002790.1|Name=Ec-00_002790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=195bp
MSCHRSYCAHGDPSADEEEEDTVVLVVDPLTCLEREKGISSDRGEHTEEE
GIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEVMAHMGA
PHTFTASGPGYSTEFLMEMFVLAATFNIEVGGTTGLMSKKQILNADVVGR
FPYSPPRSSQSGVHSHSWSNLFSSPEYGYVPTEGISSRGPGPAV*
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spliced messenger RNA

>Ec-00_002790.1 ID=Ec-00_002790.1|Name=Ec-00_002790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=585bp|location=Sequence derived from alignment at chr_00:2940687..2942482- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTGTCATCGTTCCTACTGTGCCCACGGTGACCCAAGCGCCGACGA
GGAAGAAGAAGACACCGTGGTTCTCGTGGTAGACCCGTTGACATGTCTGG
AGAGGGAGAAGGGGATCTCAAGTGATCGAGGCGAGCATACGGAGGAAGAG
GGCATCAAGATGGCCTGCCCGCCGCGAAAGGTTATCTGCCGGGCGTCTAC
CCGCCTGCGAGACGTGATCATCAACTCACCGGCGGGGGAACTTCCCCTGC
TGCGTGGCCGTTACCGTACCTGGGAAGAGGTGATGGCGCACATGGGGGCT
CCTCACACTTTCACCGCCTCAGGCCCCGGCTACTCGACCGAGTTTTTGAT
GGAAATGTTCGTCCTGGCTGCCACGTTTAACATCGAGGTCGGTGGAACGA
CGGGACTAATGTCAAAAAAACAGATTCTTAACGCCGACGTCGTGGGTCGA
TTTCCGTATTCCCCGCCGCGTAGCTCTCAGAGCGGCGTGCATAGCCATAG
CTGGTCAAACCTGTTCTCTTCTCCAGAATATGGCTATGTTCCTACTGAGG
GCATCAGTTCCAGGGGCCCTGGTCCTGCTGTATAG
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protein sequence of Ec-00_002790.1

>Ec-00_002790.1 ID=Ec-00_002790.1|Name=Ec-00_002790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=195bp
MSCHRSYCAHGDPSADEEEEDTVVLVVDPLTCLEREKGISSDRGEHTEEE
GIKMACPPRKVICRASTRLRDVIINSPAGELPLLRGRYRTWEEVMAHMGA
PHTFTASGPGYSTEFLMEMFVLAATFNIEVGGTTGLMSKKQILNADVVGR
FPYSPPRSSQSGVHSHSWSNLFSSPEYGYVPTEGISSRGPGPAV*
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mRNA from alignment at chr_00:2940687..2942482-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002790.1 ID=Ec-00_002790.1|Name=Ec-00_002790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1796bp|location=Sequence derived from alignment at chr_00:2940687..2942482- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGTGTCATCGTTCCTACTGTGCCCACGGTGACCCAAGCGCCGACGA
GGAAGAAGAAGACACCGTGGTTCTCGTGGTAGACCCGTTGACATGTCTGG
AGAGGGAGAAGGGGATCTCAAGTGATCGAGGCGAGCATACGGAGGAAGAG
GGCATCAAGATGGCCTGCCCGCCGCGAAAGGTGAGACGATTTCGCACGGT
TCGCTCTCTCGTACATTTTGTCCATGCAGTGGGAGGAACTTTTCGCCTAT
CATTGTACAGGCCCAAGTTCTTTTCCGTGTGATGTTTTCAAAAATTGGGG
AAAGAAGGAAAGCACCTGTACAGCGGGGAGTTGAACCATGGCCCGACCCA
AGACGCAGAAAGTGCCAGATGAGACAAGGTGTGGCGAAGACGTTTAACCG
CACGTATGTCATGTGTCGAGCTGTCATGTCCACTTGTACTTCATCCTGTG
GTGGTGACGTACCCGTGTTTTCGTGGAGATGCACACACTGCAGTATCCAT
GCGCACAATGCCCAACCCATTGCCCTCGGAATACCTACAGACAGAATTTT
TCATCTTTGACGCTCTCGTCCATCGGATGACCCGCGGCGCCTGACAACGG
TGGGCTGAATTCAAGTGTAGAATGACAATCAACATCTCGGGATCAGCGAT
GATGTGTGGTCGGAGGAAATCGAGGCCTTTTCGTGACGAAAACGAAACTC
CTCCCCGATGAAACGCGACCCGTCCATCAATATTTTCGCGTGCAAGATAC
ATCACGATACATCACGATACTATGAACAGTATTCTACTGCAAAATCTCAC
CTACTTTCGTTTGGGTGTAAACATAATTTTCTGCTCGCTGTTTCTTAACC
CAAGGCCTGTCCGACAAAACTACGTCTGTGTGATTTGGCCTCTTTCTGAC
TCGAGGTTATCTGCCGGGCGTCTACCCGCCTGCGAGACGTGATCATCAAC
TCACCGGCGGGGGAACTTCCCCTGCTGCGTGGCCGTTACCGTACCTGGGA
AGAGGCGAGTATCCACCGGTGGCGTTGTATTCCTTTTCGTGTATTGTATC
TGCTGGATTCAAATTCTGCCGTATTGCCAATGTGTAGGAAGCTCGCGTGC
ACCGGCTATCACCCTTGCGATCGCGGCGGCGCTCATCAAGCGGCAGTTAG
TCCCTTGACCGGTGCTGTCAACACTTCTGAGCCCTAGAATGCGATCATTG
CTTGTGTCTGGTCTTCTCCGTCGGCTGTGGAAGTTTTAGAATGGAGTCTC
GATACGCATGGGGAGATCGCTAGTCCATGGCAATACCAACCGCCGAGGAA
CATTGCTGGTACGATGTGGGAGGACACCCGCTAAAAGGAAAGAACAAAAG
AATCTACCCTTCGACGGGGAAGAAGTTTTCCGCGTACCCCGCAGCCCTCG
TGGGTGTCCCGCTCTCTCGGTGCTGTGCATCCGAGTGAGACTTCCCCCGT
TGTGGCTTTCGTTAACGTGCCCAATCGTGTGTGCCTTTAGGTGATGGCGC
ACATGGGGGCTCCTCACACTTTCACCGCCTCAGGCCCCGGCTACTCGACC
GAGTTTTTGATGGAAATGTTCGTCCTGGCTGCCACGTTTAACATCGAGGT
CGGTGGAACGACGGGACTAATGTCAAAAAAACAGATTCTTAACGCCGACG
TCGTGGGTCGATTTCCGTATTCCCCGCCGCGTAGCTCTCAGAGCGGCGTG
CATAGCCATAGCTGGTCAAACCTGTTCTCTTCTCCAGAATATGGCTATGT
TCCTACTGAGGGCATCAGTTCCAGGGGCCCTGGTCCTGCTGTATAG
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Coding sequence (CDS) from alignment at chr_00:2940687..2942482-

>Ec-00_002790.1 ID=Ec-00_002790.1|Name=Ec-00_002790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=585bp|location=Sequence derived from alignment at chr_00:2940687..2942482- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGTGTCATCGTTCCTACTGTGCCCACGGTGACCCAAGCGCCGACGA
GGAAGAAGAAGACACCGTGGTTCTCGTGGTAGACCCGTTGACATGTCTGG
AGAGGGAGAAGGGGATCTCAAGTGATCGAGGCGAGCATACGGAGGAAGAG
GGCATCAAGATGGCCTGCCCGCCGCGAAAGGTTATCTGCCGGGCGTCTAC
CCGCCTGCGAGACGTGATCATCAACTCACCGGCGGGGGAACTTCCCCTGC
TGCGTGGCCGTTACCGTACCTGGGAAGAGGTGATGGCGCACATGGGGGCT
CCTCACACTTTCACCGCCTCAGGCCCCGGCTACTCGACCGAGTTTTTGAT
GGAAATGTTCGTCCTGGCTGCCACGTTTAACATCGAGGTCGGTGGAACGA
CGGGACTAATGTCAAAAAAACAGATTCTTAACGCCGACGTCGTGGGTCGA
TTTCCGTATTCCCCGCCGCGTAGCTCTCAGAGCGGCGTGCATAGCCATAG
CTGGTCAAACCTGTTCTCTTCTCCAGAATATGGCTATGTTCCTACTGAGG
GCATCAGTTCCAGGGGCCCTGGTCCTGCTGTATAG
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Synonyms
The feature 'Ec-00_002790.1' has the following synonyms
Synonym
Esi1655_0001
Esi_1655_0001