Ec-00_002720.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002720.1
Unique NameEc-00_002720.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length135
Homology
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BLAST of Ec-00_002720.1 vs. uniprot
Match: D7FLX3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX3_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.920e-22
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 MEAEPLHKRALDIARSTTGPGHPTAAYSLHGLAVLAQARGRFDE 132
            MEAEPLHKRALDIARSTTGPGHPTAAYSLHGLAVLAQARGRFDE
Sbjct:    1 MEAEPLHKRALDIARSTTGPGHPTAAYSLHGLAVLAQARGRFDE 44
The following BLAST results are available for this feature:
BLAST of Ec-00_002720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLX3_ECTSI6.920e-22100.00TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2884715..2886244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog2880.D7FLX3
Length405
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Gene idEc-00_002720.1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002720Ec-00_002720Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2884715..2886244 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002720.1.4Ec-00_002720.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2884715..2884822 -
Ec-00_002720.1.3Ec-00_002720.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2885314..2885373 -
Ec-00_002720.1.2Ec-00_002720.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2885809..2885927 -
Ec-00_002720.1.1Ec-00_002720.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2886127..2886244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002720.1CDS:Ec-00_002720.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2884715..2884822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002720.1Ec-00_002720.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2884715..2886244 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002720.1 ID=Ec-00_002720.1|Name=Ec-00_002720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=135bp
MEAEPLHKRALDIARSTTGPGHPTAAYSLHGLAVLAQARGRFDEAETLFR
EALGINERAHGNRHPEVASCLNSLAALLQARGSYDEAEILFTRALEVDEA
CFGLEHPRVAAGLHNLAALLQAQGKHEEADRLQR*
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spliced messenger RNA

>Ec-00_002720.1 ID=Ec-00_002720.1|Name=Ec-00_002720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=405bp|location=Sequence derived from alignment at chr_00:2884715..2886244- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCCGAGCCGCTGCACAAAAGGGCGCTCGATATCGCGCGAAGCAC
CACCGGCCCCGGCCACCCCACGGCCGCCTACTCTCTTCACGGACTAGCAG
TCTTGGCACAGGCCCGAGGGAGGTTCGATGAGGCGGAAACGCTGTTCCGA
GAAGCCCTGGGGATCAACGAGCGGGCCCACGGGAATCGCCACCCGGAGGT
GGCCTCCTGCCTCAACAGCCTCGCTGCCCTCCTGCAGGCTCGAGGAAGCT
ACGACGAAGCAGAAATCCTCTTCACGAGAGCGCTGGAAGTGGACGAGGCG
TGTTTTGGGTTGGAGCACCCCCGGGTAGCGGCGGGTTTGCACAACCTGGC
GGCGTTGCTGCAGGCACAAGGGAAGCACGAGGAGGCTGACAGGCTACAAA
GGTGA
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protein sequence of Ec-00_002720.1

>Ec-00_002720.1 ID=Ec-00_002720.1|Name=Ec-00_002720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=135bp
MEAEPLHKRALDIARSTTGPGHPTAAYSLHGLAVLAQARGRFDEAETLFR
EALGINERAHGNRHPEVASCLNSLAALLQARGSYDEAEILFTRALEVDEA
CFGLEHPRVAAGLHNLAALLQAQGKHEEADRLQR*
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mRNA from alignment at chr_00:2884715..2886244-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002720.1 ID=Ec-00_002720.1|Name=Ec-00_002720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1530bp|location=Sequence derived from alignment at chr_00:2884715..2886244- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGCCGAGCCGCTGCACAAAAGGGCGCTCGATATCGCGCGAAGCAC
CACCGGCCCCGGCCACCCCACGGCCGCCTACTCTCTTCACGGACTAGCAG
TCTTGGCACAGGCCCGAGGTATACCTAAGTTTTTATCCTAGCCAGGAGGA
GCCCAGCGTGTCATGCGTTCTGTACGAGTGCTGGTTGTGGCGTTGAGGGG
ATATTGCGCTCGTTGGACCGTTACGGATGTTGGAGGGGTGTTGGCACCGC
CATGGTATATTTTGTGTTATTGCTGACTACTGCTCGTGTGTCATGCGTGC
CGCCTTGTCTCTCGCAGGGAGGTTCGATGAGGCGGAAACGCTGTTCCGAG
AAGCCCTGGGGATCAACGAGCGGGCCCACGGGAATCGCCACCCGGAGGTG
GCCTCCTGCCTCAACAGCCTCGCTGCCCTCCTGCAGGTGCACTAAAATCT
ACCTTGGCTTCATATTTGTGGTACAGTAGTACGTGTCCCGATATAGTACC
AGCATGTGCCCAGAGACTTGAGCGGCACTAATGGGAGTGGACAATCGTGG
CCAGAAGGTTGGCCGGCACTATGCCGAGCATCGGCACTGCATACTGTACA
GGCAGGGTGTTGTTGGTGCGACTGCTTTCTCGTTGGCGCTGTTGTTGCCG
GCTGTATCGCTGCGGATGGTTGTTTTTTCATTGGCTGAACATCGACGTGT
TGCGCTCGAGCCCCTGGCGTACCCCATACGGCGTCCGGCGTGTCGATGTC
TCGGACTGTCCTCTGCCAAGCCGTGGCGGTGGGTAGCTAGCTCGGTCGTG
CCTGCCACGTTCGACTTGTACTCCCGTTGAGCAAGGAGGACGGTGCCCGC
CCTACACACACTCACACACAGGCTCGAGGAAGCTACGACGAAGCAGAAAT
CCTCTTCACGAGAGCGCTGGAAGTGGACGAGGTGAGAGCGACTCTGCGAT
GTTTGCCGAGTGGAACTGGCAAAGTGTGCTTGTTTCGTGTGAAACGAAAC
CGAGCGACAACGGTCCGGCTCCACGTTTGGTTGGTGTTTTGTTTGCCGTG
GTAGGCTCATACGGGCCACGTTCTTACGATCTACGCTAGGGCAGCCTTCT
AAGCGTAGGTGTGTGTCAACAGTGTTGGTCCGAGGCCTGGACTGTAAGGT
ACCGCACCTCTACAGAACGCGGTTTATGAACCCCATCCCGTGTGCTTGGT
CCGACGTGCGGGCCGTGTTAAGCGTCTTGCCGCTAGTTTCTGACGTGCTT
CCACACAACAGGGCTGGACCATCACGCCTTTGCTAGACAAAATAACAAAT
TTTAAGAAAAGGTGGCGAAAAACGAGTAAATTAATATAACAGCAGTGGCG
CAACGTCGCGTCGCGCACTGACGTGTTGTTCACGGCGTTGCACCGATCGC
GCGGTGCCGGCCCGTGCTACAGGCGTGTTTTGGGTTGGAGCACCCCCGGG
TAGCGGCGGGTTTGCACAACCTGGCGGCGTTGCTGCAGGCACAAGGGAAG
CACGAGGAGGCTGACAGGCTACAAAGGTGA
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Coding sequence (CDS) from alignment at chr_00:2884715..2886244-

>Ec-00_002720.1 ID=Ec-00_002720.1|Name=Ec-00_002720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=405bp|location=Sequence derived from alignment at chr_00:2884715..2886244- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGCCGAGCCGCTGCACAAAAGGGCGCTCGATATCGCGCGAAGCAC
CACCGGCCCCGGCCACCCCACGGCCGCCTACTCTCTTCACGGACTAGCAG
TCTTGGCACAGGCCCGAGGGAGGTTCGATGAGGCGGAAACGCTGTTCCGA
GAAGCCCTGGGGATCAACGAGCGGGCCCACGGGAATCGCCACCCGGAGGT
GGCCTCCTGCCTCAACAGCCTCGCTGCCCTCCTGCAGGCTCGAGGAAGCT
ACGACGAAGCAGAAATCCTCTTCACGAGAGCGCTGGAAGTGGACGAGGCG
TGTTTTGGGTTGGAGCACCCCCGGGTAGCGGCGGGTTTGCACAACCTGGC
GGCGTTGCTGCAGGCACAAGGGAAGCACGAGGAGGCTGACAGGCTACAAA
GGTGA
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Synonyms
The feature 'Ec-00_002720.1' has the following synonyms
Synonym
Esi1619_0001
Esi_1619_0001