Ec-00_002560.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002560.1
Unique NameEc-00_002560.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length56
Homology
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BLAST of Ec-00_002560.1 vs. uniprot
Match: D7FL83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL83_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.830e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 MLKNAQVLAGELSSRMGKAVEDLRFDDSDKLTAGMKIEFSTILWGAKQISWYVFR 165
            MLKNAQVLAGELSSRMGKAVEDLRFDDSDKLTAGMKIEFSTILWGAKQISWYVFR
Sbjct:    1 MLKNAQVLAGELSSRMGKAVEDLRFDDSDKLTAGMKIEFSTILWGAKQISWYVFR 55
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BLAST of Ec-00_002560.1 vs. uniprot
Match: D8LIV2_ECTSI (Queuosine salvage protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV2_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.430e-11
Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 MLKNAQVLAGELSSRMGKAVEDLRFDDSDKLTAGMKIEFSTIL 129
            MLKNAQVLAGELSSRMGKAVEDLRFDDSDKLTA    +  T L
Sbjct:  228 MLKNAQVLAGELSSRMGKAVEDLRFDDSDKLTAVADADVITAL 270
The following BLAST results are available for this feature:
BLAST of Ec-00_002560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL83_ECTSI1.830e-31100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIV2_ECTSI2.430e-1181.40Queuosine salvage protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2765919..2766591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue5.4e-09
Seed eggNOG ortholog2880.D8LIV2
Length168
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_002560.1
EggNOG free text desc.Chromosome 9 open reading frame 64
EggNOG OGsKOG2524@1,KOG2524@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002560Ec-00_002560Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2765919..2766591 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002560.1.1Ec-00_002560.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2765919..2765936 +
Ec-00_002560.1.2Ec-00_002560.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2766442..2766591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002560.1CDS:Ec-00_002560.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2765919..2765936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002560.1Ec-00_002560.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2765919..2766591 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002560.1 ID=Ec-00_002560.1|Name=Ec-00_002560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=56bp
MLKNAQVLAGELSSRMGKAVEDLRFDDSDKLTAGMKIEFSTILWGAKQIS
WYVFR*
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spliced messenger RNA

>Ec-00_002560.1 ID=Ec-00_002560.1|Name=Ec-00_002560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=168bp|location=Sequence derived from alignment at chr_00:2765919..2766591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGAACGCTCAGGTGCTGGCGGGCGAGCTAAGCTCAAGGATGGG
GAAGGCCGTGGAAGACCTCCGGTTTGATGACTCGGACAAGCTTACCGCCG
GTATGAAAATAGAATTCTCCACCATATTGTGGGGAGCGAAGCAAATTTCG
TGGTATGTGTTCAGATAG
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protein sequence of Ec-00_002560.1

>Ec-00_002560.1 ID=Ec-00_002560.1|Name=Ec-00_002560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=56bp
MLKNAQVLAGELSSRMGKAVEDLRFDDSDKLTAGMKIEFSTILWGAKQIS
WYVFR*
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mRNA from alignment at chr_00:2765919..2766591+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002560.1 ID=Ec-00_002560.1|Name=Ec-00_002560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=673bp|location=Sequence derived from alignment at chr_00:2765919..2766591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTCAAGAACGCTCAGGTAGGTGATGGGTGGTAGATAGGGGAACTTTG
GTGGTAGACGGTGCTTCGGTCAAGATACTTTCTCCTTGTGTGCCACCGCT
CTTCTGTCTCTACATGTGTCGGTAGTTCTACTTTGGGTCTGGTTCCGTAT
TTCGGCCAAGCGCGGGCCAATGCGTCTACCGGAACCCAGTGTAGATATAG
CTCCCGGAGGAGCTGGGAGCGCGAAGAGGCTCGCGTGTGCGTGGATCAGA
CGGCGCGCTTGTTCCATATATGCGTCTGAAGACCGAAGATCCGGGGTCGG
CGAGATTAGCGTCGTCCCGTGCCGTTGATCCGGGTGCGAGATCTATTTTT
CGTGTTTGGAGCGGTCTCTTTCCGGAAATGGAGATAACATGACGGCGAGG
GCAAAAACCTGCTCTTCCGGGCACTCTGGCGCGGAGAAGCGCATTGCCGA
GTCTGTCATGCGTGACTCGAGGAATATTTTGGACGGGTCTTGATTGATTT
GGCTGTTTTGCGCGCCGCTGCAGGTGCTGGCGGGCGAGCTAAGCTCAAGG
ATGGGGAAGGCCGTGGAAGACCTCCGGTTTGATGACTCGGACAAGCTTAC
CGCCGGTATGAAAATAGAATTCTCCACCATATTGTGGGGAGCGAAGCAAA
TTTCGTGGTATGTGTTCAGATAG
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Coding sequence (CDS) from alignment at chr_00:2765919..2766591+

>Ec-00_002560.1 ID=Ec-00_002560.1|Name=Ec-00_002560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=168bp|location=Sequence derived from alignment at chr_00:2765919..2766591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTCAAGAACGCTCAGGTGCTGGCGGGCGAGCTAAGCTCAAGGATGGG
GAAGGCCGTGGAAGACCTCCGGTTTGATGACTCGGACAAGCTTACCGCCG
GTATGAAAATAGAATTCTCCACCATATTGTGGGGAGCGAAGCAAATTTCG
TGGTATGTGTTCAGATAG
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Synonyms
The feature 'Ec-00_002560.1' has the following synonyms
Synonym
Esi1544_0001
Esi_1544_0001