Ec-00_002510.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002510.1
Unique NameEc-00_002510.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length174
Homology
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BLAST of Ec-00_002510.1 vs. uniprot
Match: D8LDY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY0_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 1.200e-114
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 
Query:    1 MGGLGGLGTGSRPPPRRGGRQEDEGEGGRLWNRIVSDRYRLLRPWTTSPLDDSELWWAKPRLSGSGTAVVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFETERSLVLSIPAGSRTLKEVGQQMHSERRSKKNSVSDGGVFNDQPDGSCSKLPLVG 519
            MGGLGGLGTGSRPPPRRGGRQEDEGEGGRLWNRIVSDRYRLLRPWTTSPLDDSELWWAKPRLSGSGTAVVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFETERSLVLSIPAGSRTLKEVGQQMHSERRSKKNSVSDGGVFNDQPDGSCSKLPLVG
Sbjct:  627 MGGLGGLGTGSRPPPRRGGRQEDEGEGGRLWNRIVSDRYRLLRPWTTSPLDDSELWWAKPRLSGSGTAVVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFETERSLVLSIPAGSRTLKEVGQQMHSERRSKKNSVSDGGVFNDQPDGSCSKLPLVG 799
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BLAST of Ec-00_002510.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 3.690e-82
Identity = 136/161 (84.47%), Postives = 143/161 (88.82%), Query Frame = 1 
Query:    1 MGGLGGLGTGSRPPPRRGGRQEDEGEGGRLWNRIVSDRYRLLRPWTTSPLDDSELWWAKPRLSGSGTAVVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFETERSLVLSIPAGSRTLKEVGQQMHSERRSKKNSVSDGGVFNDQ 483
            MG LGGLG GS          ED+GEGGRLWN+ VSDRYRLLRPWTTSPLD+ ELWWAKPRL GSGTAVVVKVLADGKRDATGWEAFIREWGVL+YLQEEGRV GREPLSVGLVCAFETERSLVLSIPAGSRTL+EVGQ MHSERRSKK+ +SDGGVFNDQ
Sbjct:  771 MGELGGLGAGSPXXXXXXXXXEDDGEGGRLWNKTVSDRYRLLRPWTTSPLDEGELWWAKPRLCGSGTAVVVKVLADGKRDATGWEAFIREWGVLEYLQEEGRVSGREPLSVGLVCAFETERSLVLSIPAGSRTLREVGQHMHSERRSKKSRISDGGVFNDQ 931
The following BLAST results are available for this feature:
BLAST of Ec-00_002510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDY0_ECTSI1.200e-114100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5L369_9PHAE3.690e-8284.47Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2732937..2734371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length522
Hectar predicted targeting categoryother localisation
Gene idEc-00_002510.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002510Ec-00_002510Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2732937..2734371 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002510.1.1Ec-00_002510.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2732937..2733049 +
Ec-00_002510.1.2Ec-00_002510.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2733384..2733564 +
Ec-00_002510.1.3Ec-00_002510.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2734025..2734213 +
Ec-00_002510.1.4Ec-00_002510.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2734333..2734371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002510.1CDS:Ec-00_002510.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2732937..2733049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002510.1Ec-00_002510.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2732937..2734371 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002510.1 ID=Ec-00_002510.1|Name=Ec-00_002510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=174bp
MGGLGGLGTGSRPPPRRGGRQEDEGEGGRLWNRIVSDRYRLLRPWTTSPL
DDSELWWAKPRLSGSGTAVVVKVLADGKRDATGWEAFIREWGVLKYLQEE
GRVGGREPLSVGLVCAFETERSLVLSIPAGSRTLKEVGQQMHSERRSKKN
SVSDGGVFNDQPDGSCSKLPLVG*
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spliced messenger RNA

>Ec-00_002510.1 ID=Ec-00_002510.1|Name=Ec-00_002510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=522bp|location=Sequence derived from alignment at chr_00:2732937..2734371+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGGGTTGGGGGGGTTAGGAACGGGTTCGCGGCCTCCGCCGCGGAG
AGGAGGGCGGCAGGAGGACGAGGGGGAGGGAGGACGGTTGTGGAACAGGA
TCGTGTCGGACAGATACCGGTTGCTGCGTCCTTGGACGACGTCCCCCCTC
GACGACAGCGAGCTGTGGTGGGCCAAGCCCCGCCTGTCTGGTAGCGGGAC
GGCGGTGGTGGTGAAGGTCCTGGCCGACGGGAAGCGCGACGCGACGGGCT
GGGAGGCGTTCATCCGGGAGTGGGGGGTGCTCAAGTACCTCCAGGAAGAA
GGCCGGGTCGGTGGTAGGGAGCCGCTGAGCGTCGGCCTGGTGTGCGCCTT
CGAGACGGAGCGGAGCCTGGTCTTGTCGATACCGGCGGGCTCAAGGACTC
TCAAGGAGGTCGGCCAGCAGATGCACAGCGAGAGGCGGAGCAAGAAGAAC
AGCGTTTCCGACGGCGGTGTGTTTAACGATCAGCCTGACGGTTCATGCTC
CAAGTTGCCGCTTGTGGGTTAG
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protein sequence of Ec-00_002510.1

>Ec-00_002510.1 ID=Ec-00_002510.1|Name=Ec-00_002510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=174bp
MGGLGGLGTGSRPPPRRGGRQEDEGEGGRLWNRIVSDRYRLLRPWTTSPL
DDSELWWAKPRLSGSGTAVVVKVLADGKRDATGWEAFIREWGVLKYLQEE
GRVGGREPLSVGLVCAFETERSLVLSIPAGSRTLKEVGQQMHSERRSKKN
SVSDGGVFNDQPDGSCSKLPLVG*
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mRNA from alignment at chr_00:2732937..2734371+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002510.1 ID=Ec-00_002510.1|Name=Ec-00_002510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1435bp|location=Sequence derived from alignment at chr_00:2732937..2734371+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGGGGTTGGGGGGGTTAGGAACGGGTTCGCGGCCTCCGCCGCGGAG
AGGAGGGCGGCAGGAGGACGAGGGGGAGGGAGGACGGTTGTGGAACAGGA
TCGTGTCGGACAGGTCAGGTAGTGTGTGGTTCTTTCCCCGCGGCTTTTCC
TCCCCCAAGTCCTCCCGCGCCATTCAGAGCACTTGTGCGGCATCTCGCCA
CCTGCAAGTATTGTAGGTGTACATCGTATCCACGATGCATGTACCATTGC
TAGATGTACAGCACATCCACTATGCTACAAGTCAGCGCTGACTTACAGCT
CAATGGGCATGCTGTACATCTAACAGCATGCAGCCACGTACGTTTCGTTC
GGGAGGGTGCAGCAGAGAGTGCGCTCGCAGACCAGCCCGTCGCCGTTCCC
ATCATTTCGAACAACCCTTTATTTTCTCCTTCTGCGCCGCTCTCCAGATA
CCGGTTGCTGCGTCCTTGGACGACGTCCCCCCTCGACGACAGCGAGCTGT
GGTGGGCCAAGCCCCGCCTGTCTGGTAGCGGGACGGCGGTGGTGGTGAAG
GTCCTGGCCGACGGGAAGCGCGACGCGACGGGCTGGGAGGCGTTCATCCG
GGAGTGGGGGGTGCTCAAGTACCTCCAGGTCAGCGGGGCTGAGTCGATCT
TGGGCGACTTGATTACGATACCTCGCTTCGGCCGTCTTTTCTTGCGAAGA
AGGACAACTGCCCCCAAAGCACTGCTTAGTCATTTTTGGGGACGTTGTGC
AGTCCGGACTTCTCTTTTGCTCGACCACGAGTTTTCTACCTGTGAACATG
GAATCCCAACTCCACCTACACCACTACTAGAGCCCTACCACGGTATCTTC
TTTTGGGAGCCCCCTGTATCTCGACCAGAAACCCACTTACACAGTCATTT
TTTTCAAAGAGTTGGGACATGTCCAACACAAAGAAAGTATACTTCGGGAA
TTCCCTCGTCGGTAGTCTGGGGGGAACTTTTGGCTATCAGAGCCCGACAA
CGACAAAAATTTGGGTAACTGAACGTGCAACCCCTTACAGAGTTGAGGTA
GACTGTGCGTATGACTACCACGAACCTCTCTCTGCCAGGAAGAAGGCCGG
GTCGGTGGTAGGGAGCCGCTGAGCGTCGGCCTGGTGTGCGCCTTCGAGAC
GGAGCGGAGCCTGGTCTTGTCGATACCGGCGGGCTCAAGGACTCTCAAGG
AGGTCGGCCAGCAGATGCACAGCGAGAGGCGGAGCAAGAAGAACAGCGTT
TCCGACGGCGGTGTGTTTAACGATCAGGTGTGGCACGAAACAACGATGTG
GTGATGATGACCTGTCACCAATTGAAAGCGAACGTTCGTTGCGAAACGGT
TGCACCGAGGGCGGTTGGTGTCGATTACCCGCTCGTCGTTGTGCAGCCTG
ACGGTTCATGCTCCAAGTTGCCGCTTGTGGGTTAG
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Coding sequence (CDS) from alignment at chr_00:2732937..2734371+

>Ec-00_002510.1 ID=Ec-00_002510.1|Name=Ec-00_002510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=522bp|location=Sequence derived from alignment at chr_00:2732937..2734371+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGGGGTTGGGGGGGTTAGGAACGGGTTCGCGGCCTCCGCCGCGGAG
AGGAGGGCGGCAGGAGGACGAGGGGGAGGGAGGACGGTTGTGGAACAGGA
TCGTGTCGGACAGATACCGGTTGCTGCGTCCTTGGACGACGTCCCCCCTC
GACGACAGCGAGCTGTGGTGGGCCAAGCCCCGCCTGTCTGGTAGCGGGAC
GGCGGTGGTGGTGAAGGTCCTGGCCGACGGGAAGCGCGACGCGACGGGCT
GGGAGGCGTTCATCCGGGAGTGGGGGGTGCTCAAGTACCTCCAGGAAGAA
GGCCGGGTCGGTGGTAGGGAGCCGCTGAGCGTCGGCCTGGTGTGCGCCTT
CGAGACGGAGCGGAGCCTGGTCTTGTCGATACCGGCGGGCTCAAGGACTC
TCAAGGAGGTCGGCCAGCAGATGCACAGCGAGAGGCGGAGCAAGAAGAAC
AGCGTTTCCGACGGCGGTGTGTTTAACGATCAGCCTGACGGTTCATGCTC
CAAGTTGCCGCTTGTGGGTTAG
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Synonyms
The feature 'Ec-00_002510.1' has the following synonyms
Synonym
Esi1522_0001
Esi_1522_0001