Ec-00_002490.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002490.1
Unique NameEc-00_002490.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length248
Homology
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BLAST of Ec-00_002490.1 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 1.190e-139
Identity = 237/247 (95.95%), Postives = 243/247 (98.38%), Query Frame = 1 
Query:    1 MHFLCLYYKNKGDYTRASKMANGLLDYTGTSREAALAVLREIRSIMETRQHQAAESSALPQPHNANNSHDDVSLDGGSGRPLFTPRAATGSSHHDGSGAGGSQLFNANNSGLGGSVRGATRAAAGTFPTPTPRRPGRVRNGVSPGTGXXXXXXXXXXXXSGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDDDGGALARYSPGIATPVATGHGGAGAGHDGSPEAGGDGQGEESLSDILSP 741
            MHFLCLYYKN+GDYTRASKMANGLLD+TGTSREAALAVLREIRSIMETRQHQAAESSALPQPHNANNSH+DVSLDGGSGRPLFTPRAATG+SHHDGSGAGGSQLF ANNSG+GGSVRGA RAA GTFPTPTPRRPGRV +GVSPGTGXXXXXXXXXXXXSGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDDDGGALARYSPGIATPVATGHGGAGAGHDGSPEAGGDGQGEESLSDILSP
Sbjct:  607 MHFLCLYYKNRGDYTRASKMANGLLDHTGTSREAALAVLREIRSIMETRQHQAAESSALPQPHNANNSHNDVSLDGGSGRPLFTPRAATGASHHDGSGAGGSQLFIANNSGVGGSVRGAIRAAGGTFPTPTPRRPGRVCSGVSPGTGXXXXXXXXXXXXSGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDDDGGALARYSPGIATPVATGHGGAGAGHDGSPEAGGDGQGEESLSDILSP 853
The following BLAST results are available for this feature:
BLAST of Ec-00_002490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHG7_9PHAE1.190e-13995.95ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2728180..2729595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score448.7
Seed ortholog evalue1.7e-123
Seed eggNOG ortholog2880.D7FLS8
Preferred nameAPC8
Length744
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
Gene idEc-00_002490.1
GOsGO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
EggNOG free text desc.regulation of mitotic metaphase/anaphase transition
EggNOG OGsCOG0013@1,KOG1155@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002490Ec-00_002490Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2728180..2729595 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002490.1.2Ec-00_002490.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2728180..2728833 -
Ec-00_002490.1.1Ec-00_002490.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2729506..2729595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002490.1CDS:Ec-00_002490.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2728180..2728833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002490.1Ec-00_002490.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2728180..2729595 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002490.1 ID=Ec-00_002490.1|Name=Ec-00_002490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=248bp
MHFLCLYYKNKGDYTRASKMANGLLDYTGTSREAALAVLREIRSIMETRQ
HQAAESSALPQPHNANNSHDDVSLDGGSGRPLFTPRAATGSSHHDGSGAG
GSQLFNANNSGLGGSVRGATRAAAGTFPTPTPRRPGRVRNGVSPGTGGGG
GGAAGGGAGSGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDDDG
GALARYSPGIATPVATGHGGAGAGHDGSPEAGGDGQGEESLSDILSP*
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spliced messenger RNA

>Ec-00_002490.1 ID=Ec-00_002490.1|Name=Ec-00_002490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=744bp|location=Sequence derived from alignment at chr_00:2728180..2729595- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTCCTGTGTCTCTACTACAAGAACAAGGGCGACTACACCAGGGC
ATCCAAGATGGCGAACGGTCTCCTGGACTACACGGGAACGTCGCGTGAGG
CAGCACTGGCGGTTCTGAGAGAAATCCGAAGCATAATGGAAACCCGGCAA
CACCAAGCCGCCGAGTCTTCCGCCCTACCTCAGCCCCACAACGCCAACAA
CAGCCACGACGACGTCTCCCTTGACGGGGGCAGCGGACGGCCCCTCTTCA
CGCCGAGGGCGGCGACAGGGTCATCTCACCACGACGGTAGCGGAGCGGGC
GGCAGTCAGCTGTTCAACGCCAACAACAGCGGCCTTGGTGGTAGCGTTCG
TGGTGCAACAAGAGCAGCAGCGGGCACTTTCCCCACCCCGACCCCTCGTA
GACCCGGCAGGGTCCGCAACGGGGTTTCACCAGGAACAGGCGGAGGCGGC
GGGGGAGCCGCGGGAGGCGGGGCCGGATCAGGGACTCCAGGCTATCGGCT
GATGGGCAACAGCGGAGGGGGGACTTCTTTGGCGCCACGGTCCCCGGAAG
ACATGAGCGTCGCGATGAGCCTTGGGTCTTCAGACGAAGACGACGACGGA
GGGGCGTTGGCCCGATATTCACCGGGCATAGCGACGCCGGTCGCGACTGG
CCATGGTGGTGCGGGTGCCGGGCATGATGGGTCGCCTGAGGCGGGCGGAG
ACGGGCAGGGCGAGGAGTCTTTGAGCGATATCCTGTCCCCATGA
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protein sequence of Ec-00_002490.1

>Ec-00_002490.1 ID=Ec-00_002490.1|Name=Ec-00_002490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=248bp
MHFLCLYYKNKGDYTRASKMANGLLDYTGTSREAALAVLREIRSIMETRQ
HQAAESSALPQPHNANNSHDDVSLDGGSGRPLFTPRAATGSSHHDGSGAG
GSQLFNANNSGLGGSVRGATRAAAGTFPTPTPRRPGRVRNGVSPGTGGGG
GGAAGGGAGSGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDDDG
GALARYSPGIATPVATGHGGAGAGHDGSPEAGGDGQGEESLSDILSP*
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mRNA from alignment at chr_00:2728180..2729595-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002490.1 ID=Ec-00_002490.1|Name=Ec-00_002490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1416bp|location=Sequence derived from alignment at chr_00:2728180..2729595- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATTTCCTGTGTCTCTACTACAAGAACAAGGGCGACTACACCAGGGC
ATCCAAGATGGCGAACGGTCTCCTGGACTACACGGGAACGGTGAGTTTCC
ACTCTCAACGTTTTCTCTTGGTATCGTGAACCGTTGATAGCATGCTGCTT
CGGCTGGTGGTGGTGTTGGAGTTATTGCTGCTTCCTGCGCCGCCGCCGCT
GCTGCTTCCTGCTGATGTTGCTTGTTGCCACAGGTTTTGCGATTTTGAAC
GTTTACGTCGTTGTTGTTGCCGGGGGTCATCTGTTGGCATGTTGATGGTT
GGTACCGCTCTTATTGTGCGGGTATTTTTTGGGACGTTTCTTGTGATGGA
AGGGACAACGCCAGGGTTCCCGCACGCCGATCTGCTCTTTTACCCTGCTC
CATTTTTGTTTGCTCTTGTTCAGTATATCCAGACGCGCATTGGCAAGGCA
TCCAACCACCTCCAGAAGAACCCATGGACACGCGGCGGTCCATCTCGCAC
TTTTCACAACATGTTTATTGGAGTAACTGCTGTGCAGGATGGATTTCTCT
CTATGTTCTTCTGATCCTGTTCGCTACGCATTCATACCCACGCCCCCCCA
AATCGTAATGTAGGGTTGTCCCTGTGACTTTCGCTTGTTTTCACAGCCTT
GGCCTTTTCGCGATTTCCAGCGATAGTGGTGCCCATTTTCTGCTAGACTT
ATTTATCGTCACGCCCACCGTTCCTCTGCACCCACGTCGCACGCACGACG
ACACCACAACAGTCGCGTGAGGCAGCACTGGCGGTTCTGAGAGAAATCCG
AAGCATAATGGAAACCCGGCAACACCAAGCCGCCGAGTCTTCCGCCCTAC
CTCAGCCCCACAACGCCAACAACAGCCACGACGACGTCTCCCTTGACGGG
GGCAGCGGACGGCCCCTCTTCACGCCGAGGGCGGCGACAGGGTCATCTCA
CCACGACGGTAGCGGAGCGGGCGGCAGTCAGCTGTTCAACGCCAACAACA
GCGGCCTTGGTGGTAGCGTTCGTGGTGCAACAAGAGCAGCAGCGGGCACT
TTCCCCACCCCGACCCCTCGTAGACCCGGCAGGGTCCGCAACGGGGTTTC
ACCAGGAACAGGCGGAGGCGGCGGGGGAGCCGCGGGAGGCGGGGCCGGAT
CAGGGACTCCAGGCTATCGGCTGATGGGCAACAGCGGAGGGGGGACTTCT
TTGGCGCCACGGTCCCCGGAAGACATGAGCGTCGCGATGAGCCTTGGGTC
TTCAGACGAAGACGACGACGGAGGGGCGTTGGCCCGATATTCACCGGGCA
TAGCGACGCCGGTCGCGACTGGCCATGGTGGTGCGGGTGCCGGGCATGAT
GGGTCGCCTGAGGCGGGCGGAGACGGGCAGGGCGAGGAGTCTTTGAGCGA
TATCCTGTCCCCATGA
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Coding sequence (CDS) from alignment at chr_00:2728180..2729595-

>Ec-00_002490.1 ID=Ec-00_002490.1|Name=Ec-00_002490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=744bp|location=Sequence derived from alignment at chr_00:2728180..2729595- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATTTCCTGTGTCTCTACTACAAGAACAAGGGCGACTACACCAGGGC
ATCCAAGATGGCGAACGGTCTCCTGGACTACACGGGAACGTCGCGTGAGG
CAGCACTGGCGGTTCTGAGAGAAATCCGAAGCATAATGGAAACCCGGCAA
CACCAAGCCGCCGAGTCTTCCGCCCTACCTCAGCCCCACAACGCCAACAA
CAGCCACGACGACGTCTCCCTTGACGGGGGCAGCGGACGGCCCCTCTTCA
CGCCGAGGGCGGCGACAGGGTCATCTCACCACGACGGTAGCGGAGCGGGC
GGCAGTCAGCTGTTCAACGCCAACAACAGCGGCCTTGGTGGTAGCGTTCG
TGGTGCAACAAGAGCAGCAGCGGGCACTTTCCCCACCCCGACCCCTCGTA
GACCCGGCAGGGTCCGCAACGGGGTTTCACCAGGAACAGGCGGAGGCGGC
GGGGGAGCCGCGGGAGGCGGGGCCGGATCAGGGACTCCAGGCTATCGGCT
GATGGGCAACAGCGGAGGGGGGACTTCTTTGGCGCCACGGTCCCCGGAAG
ACATGAGCGTCGCGATGAGCCTTGGGTCTTCAGACGAAGACGACGACGGA
GGGGCGTTGGCCCGATATTCACCGGGCATAGCGACGCCGGTCGCGACTGG
CCATGGTGGTGCGGGTGCCGGGCATGATGGGTCGCCTGAGGCGGGCGGAG
ACGGGCAGGGCGAGGAGTCTTTGAGCGATATCCTGTCCCCATGA
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Synonyms
The feature 'Ec-00_002490.1' has the following synonyms
Synonym
Esi1519_0001
Esi_1519_0001