Ec-00_002480.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_002480.1
Unique Name	Ec-00_002480.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	212

Homology

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BLAST of Ec-00_002480.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI)

HSP 1 Score: 447 bits (1150), Expect = 5.140e-159
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1

Query:   52 MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVRATPSRLKITETTSPLF 684
            MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVRATPSRLKITETTSPLF
Sbjct:    1 MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVRATPSRLKITETTSPLF 211

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BLAST of Ec-00_002480.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 449 bits (1154), Expect = 2.140e-155
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1

Query:    1 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 633
            CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHG FNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV
Sbjct:  223 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 433

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BLAST of Ec-00_002480.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 1.580e-134
Identity = 189/232 (81.47%), Postives = 204/232 (87.93%), Query Frame = 1

Query:    1 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVRATPSRLKITETTSPLF 684
            CIDP A CV DD +TVDM +NC Y+  +GNGWCD  NN E C YDGGDCC CTC+S ++DDY CSSE+G F+C+DPNASCFGEE+TGSDD+STDD+PMSYEFVPWEETEALPTVDGAVEVGTKTEVGVS+TAHDVR G    D GCGEVGGLGCTA NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTI+DIQVAFWKGNERTRTLEVRATPSRLK  E TS LF
Sbjct:  146 CIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEESTGSDDYSTDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEITSRLF 377

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BLAST of Ec-00_002480.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 7.050e-133
Identity = 184/215 (85.58%), Postives = 195/215 (90.70%), Query Frame = 1

Query:    1 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 633
            CIDP APCVDDD +TVDM++NC Y+  +GNGWCD  NN E C YDGGDCC CTCES ++DDY+CSSE+G F+CKDPNASCFGEE TGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG    D GCGEVGGLGCTA NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTI+DIQVAFWKGNERTRTLEV
Sbjct:  246 CIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPNASCFGEEPTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEV 460

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BLAST of Ec-00_002480.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 393 bits (1010), Expect = 6.500e-129
Identity = 186/232 (80.17%), Postives = 202/232 (87.07%), Query Frame = 1

Query:    1 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVRATPSRLKITETTSPLF 684
            CIDP A CV DD +TVDM +NC Y+  +GNGWCD  NN E C YDGGDCC CTC+S ++DDY CSSE+G F+C+DPNASCFGEE+TGSDD+STDD+PMSYEFVPWEETEALPTVDGAVEVGTKTEVGVS+TAHDVR G    D GCGEVGGLGCTA NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTI+DIQVAFWKGNERTRTLEVRATPSRLK  E  +  F
Sbjct:  508 CIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEESTGSDDYSTDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEIQAVFF 739

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BLAST of Ec-00_002480.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 2.430e-122
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 1

Query:  127 AYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 633
            +YDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV
Sbjct:   14 SYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 182

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BLAST of Ec-00_002480.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 7.140e-119
Identity = 167/217 (76.96%), Postives = 182/217 (83.87%), Query Frame = 1

Query:    1 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 633
            CIDP APCVDDD VTVDM++NC Y+  +GNGWCD  NN E C YDGGDCC CTC+SA++DDY+CSSE+G F+C+DP ASCFGE TTGSDDFS  D  QPMSYEF+ WEETE+LPTV  AVEVGTKTEVGVS+TAHDVRPG    D GCGEVGGLGCTA NTRDGI S+IESRWSCAT LV DEGPCQIEFTFAEPQ IVDIQVAFW  NER  TLEV
Sbjct:    5 CIDPSAPCVDDDDVTVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPTASCFGEGTTGSDDFSFHDDYQPMSYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEV 221

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BLAST of Ec-00_002480.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 1.050e-112
Identity = 165/217 (76.04%), Postives = 184/217 (84.79%), Query Frame = 1

Query:    1 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 633
            CIDP APCV+DD VT+DM++NC Y+  +GNGWCD  NN E C YDGGDCC CTC+SA++DDY+CSSE+G F+C+DP+ASCFGE TTGSDDFS  D  QPMSYEFV WEET++LPTV  AVEVGTKTEVGVS+TAHD+RPG    D GCGEVGGLGCTA NTRDGIFS+IESRWSCAT LV DEGPCQIEFTFAEPQ IVDIQVAFW  NER  TLEV
Sbjct:  466 CIDPSAPCVNDDDVTIDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTGSDDFSFHDDYQPMSYEFVSWEETDSLPTVVDAVEVGTKTEVGVSATAHDLRPGSSGGDVGCGEVGGLGCTATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEV 682

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BLAST of Ec-00_002480.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 1.040e-106
Identity = 155/219 (70.78%), Postives = 171/219 (78.08%), Query Frame = 1

Query:    1 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETT-GSDDFST---DDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 633
            CIDP APCV+DD +TVDM DNC Y+  +G+GWCD  NN E C YDGGDCC CTCES W+DDYTC  E   F+CKDP+A+CFGEET  G+ D ST    D    YEFVPWE+TE LPTVD AVEVGTKTEV VS+TAHDVR G    + GCGE GG GC A N RDGI +EIESRWSCA KL+DDEGPCQIEF+FAEPQ IVDIQVAFWKGNER RTLEV
Sbjct:   34 CIDPNAPCVNDDDITVDMFDNCGYVSGIGDGWCDSNNNKEACGYDGGDCCSCTCESVWDDDYTCG-EDAFFDCKDPSAACFGEETAMGNGDDSTGRSSDPDTEYEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEV 251

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BLAST of Ec-00_002480.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 5.570e-96
Identity = 154/221 (69.68%), Postives = 172/221 (77.83%), Query Frame = 1

Query:    1 CIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEEN--NNELCAYDGGDCCECTCESAWN--DDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRP----GDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEV 633
            CIDP A CV+DD +TVDM  NC+Y   +GNGW          +  YDGGDCC CTC++AW+  DDY+CSSE+   +CKDP ASCFGE TTGSDDF+  D  QP SYEFV WEETE+LPTV  AVEVGTKTEVGVS+TAHDVRP     D GCG+VGGLGCTA NTRDGI S+IESRWSCAT LV DEG CQIEF+FAEPQ +VDIQVAFWKGNERTRTL V
Sbjct:  336 CIDPEAACVNDDDITVDMFVNCEYPVDIGNGWLRWRRLLRVHMRGYDGGDCCSCTCQNAWDWDDDYSCSSEYNSLDCKDPTASCFGEGTTGSDDFTFHDDYQPTSYEFVHWEETESLPTVIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWV 556

The following BLAST results are available for this feature:

BLAST of Ec-00_002480.1 vs. uniprot

BLAST of Ec-00_002480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FL19_ECTSI	5.140e-159	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G4F9_ECTSI	2.140e-155	99.53	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KB04_9PHAE	1.580e-134	81.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G3F4_ECTSI	7.050e-133	85.58	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JXR2_9PHAE	6.500e-129	80.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G5F4_ECTSI	2.430e-122	99.41	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FI88_ECTSI	7.140e-119	76.96	Similar to Pappalysin-2 (Pregnancy-associated plas...	[more]
A0A6H5JM92_9PHAE	1.050e-112	76.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G0S3_ECTSI	1.040e-106	70.78	LNR domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FI87_ECTSI	5.570e-96	69.68	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:2723370..2724711 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	65.9
Seed ortholog evalue	2.7e-08
Seed eggNOG ortholog	2880.D7FX77
Length	688
Hectar predicted targeting category	other localisation
Gene id	Ec-00_002480.1
EggNOG OGs	2E9KF@1,2SFXU@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480	Ec-00_002480	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 2722369..2724721 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480.1.1	Ec-00_002480.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2723370..2723497 +
Ec-00_002480.1.2	Ec-00_002480.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2724152..2724711 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480	5UTR:Ec-00_002480.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 2723370..2723421 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480.1	CDS:Ec-00_002480.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 2723422..2723497 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480.1	Ec-00_002480.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 2723422..2724711 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:2723370..2724711+
coding sequence from alignment at chr_00:2723370..2724711+

mRNA sequence

>Ec-00_002480.1 ID=Ec-00_002480.1|Name=Ec-00_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=212bp
MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSE
HGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGA
VEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRW
SCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVRATPSR
LKITETTSPLF*

spliced messenger RNA

>Ec-00_002480.1 ID=Ec-00_002480.1|Name=Ec-00_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=688bp|location=Sequence derived from alignment at chr_00:2723370..2724711+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTGCATCGACCCTGGAGCACCCTGCGTCGATGACGATTCAGTCACCGTGG
ATATGATCGACAACTGCGACTACCTACGGGTAATGGGGAATGGCTGGTGT
GACGAAGAGAACAACAACGAGCTATGCGCGTACGATGGCGGCGACTGCTG
CGAGTGCACGTGCGAGAGCGCTTGGAATGACGACTACACCTGCAGCAGCG
AGCACGGCATCTTCAACTGCAAAGACCCGAACGCCTCCTGCTTCGGCGAA
GAAACTACTGGGAGCGATGACTTCAGCACCGACGACCAGCCAATGTCGTA
CGAATTTGTCCCCTGGGAAGAGACAGAGGCCCTGCCGACGGTCGACGGTG
CTGTTGAGGTGGGCACCAAGACCGAGGTGGGCGTATCATCTACCGCCCAC
GACGTGCGGCCCGGCGACGACGGGTGCGGAGAGGTCGGCGGCCTTGGCTG
CACGGCGGCCAACACCCGTGATGGAATTTTCTCCGAGATCGAGTCGAGGT
GGTCGTGCGCCACGAAGCTCGTGGATGACGAAGGGCCGTGCCAGATCGAG
TTCACCTTTGCCGAACCCCAGACCATTGTGGACATCCAGGTTGCCTTCTG
GAAGGGAAACGAGCGCACCCGTACCCTAGAGGTGAGGGCGACACCCAGCA
GGCTGAAGATCACCGAAACAACAAGCCCTCTATTTTAG

protein sequence of Ec-00_002480.1

>Ec-00_002480.1 ID=Ec-00_002480.1|Name=Ec-00_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=212bp
MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSE
HGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGA
VEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRW
SCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVRATPSR
LKITETTSPLF*

mRNA from alignment at chr_00:2723370..2724711+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_002480.1 ID=Ec-00_002480.1|Name=Ec-00_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1342bp|location=Sequence derived from alignment at chr_00:2723370..2724711+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTGCATCGACCCTGGAGCACCCTGCGTCGATGACGATTCAGTCACCGTGG
ATATGATCGACAACTGCGACTACCTACGGGTAATGGGGAATGGCTGGTGT
GACGAAGAGAACAACAACGAGCTATGCGGTAAGCCTCGTGGTTCTATTTA
GTATCGGAAGGCGGTGATTTGCTGCTTCTTGAAAACGTTCACCACCGTGC
TGGAGCAGGCGCTGTCCCAAGCAGAATAGGCCGCGACAGTCAACCTTGTC
AAGCAACATTGCTCGCCCAACTGGCTGAATCCCTTCTTGTTTGATGCGTC
CGGATGGGTTTTCAGTGAATCAAGTAGTGTAGCTCGTTCGACACTTCCCA
GAAATCGCAGGCGTTGCCGTCTCAAGCGAATGCCTATGCATGGAAAATAC
GGGGTGTCGTTGGCGCTCTGCCCCATGTATCCTTCCCGCGTTGGTTGTCT
CAAGACCAAGCTATGCATGTAGCGCTACTGGCCAAGAAACAACCTCTGTC
GTTCTGTCCTCTGTGTTTCTCTGCTTCTTTCTTTGATCTGTGCATGTTGG
CAACAAATGCGCGGAAGCGATTCTGTGGGCGTCTATTTGTTTGAAGTTGA
TGGTGCCGATGCCATTACTTCCGCTCGCCCATTTCGGTGTTGTACTGGCA
TGCGAGATTTGCCGCATGCAAACAAACTATTTCCGCAGGGATCAGGCTCA
ACCAGCCAACAGCGACCGCTTCCCCTTCTCCTCTTTGCCTTGTAATTCCC
CCTCGCTGTTGAACTATCCTTCTGTTCCTCAGCGTACGATGGCGGCGACT
GCTGCGAGTGCACGTGCGAGAGCGCTTGGAATGACGACTACACCTGCAGC
AGCGAGCACGGCATCTTCAACTGCAAAGACCCGAACGCCTCCTGCTTCGG
CGAAGAAACTACTGGGAGCGATGACTTCAGCACCGACGACCAGCCAATGT
CGTACGAATTTGTCCCCTGGGAAGAGACAGAGGCCCTGCCGACGGTCGAC
GGTGCTGTTGAGGTGGGCACCAAGACCGAGGTGGGCGTATCATCTACCGC
CCACGACGTGCGGCCCGGCGACGACGGGTGCGGAGAGGTCGGCGGCCTTG
GCTGCACGGCGGCCAACACCCGTGATGGAATTTTCTCCGAGATCGAGTCG
AGGTGGTCGTGCGCCACGAAGCTCGTGGATGACGAAGGGCCGTGCCAGAT
CGAGTTCACCTTTGCCGAACCCCAGACCATTGTGGACATCCAGGTTGCCT
TCTGGAAGGGAAACGAGCGCACCCGTACCCTAGAGGTGAGGGCGACACCC
AGCAGGCTGAAGATCACCGAAACAACAAGCCCTCTATTTTAG

Coding sequence (CDS) from alignment at chr_00:2723370..2724711+

>Ec-00_002480.1 ID=Ec-00_002480.1|Name=Ec-00_002480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=636bp|location=Sequence derived from alignment at chr_00:2723370..2724711+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCGACAACTGCGACTACCTACGGGTAATGGGGAATGGCTGGTGTGA
CGAAGAGAACAACAACGAGCTATGCGCGTACGATGGCGGCGACTGCTGCG
AGTGCACGTGCGAGAGCGCTTGGAATGACGACTACACCTGCAGCAGCGAG
CACGGCATCTTCAACTGCAAAGACCCGAACGCCTCCTGCTTCGGCGAAGA
AACTACTGGGAGCGATGACTTCAGCACCGACGACCAGCCAATGTCGTACG
AATTTGTCCCCTGGGAAGAGACAGAGGCCCTGCCGACGGTCGACGGTGCT
GTTGAGGTGGGCACCAAGACCGAGGTGGGCGTATCATCTACCGCCCACGA
CGTGCGGCCCGGCGACGACGGGTGCGGAGAGGTCGGCGGCCTTGGCTGCA
CGGCGGCCAACACCCGTGATGGAATTTTCTCCGAGATCGAGTCGAGGTGG
TCGTGCGCCACGAAGCTCGTGGATGACGAAGGGCCGTGCCAGATCGAGTT
CACCTTTGCCGAACCCCAGACCATTGTGGACATCCAGGTTGCCTTCTGGA
AGGGAAACGAGCGCACCCGTACCCTAGAGGTGAGGGCGACACCCAGCAGG
CTGAAGATCACCGAAACAACAAGCCCTCTATTTTAG

Synonyms

The feature 'Ec-00_002480.1' has the following synonyms


Synonym
Esi1517_0001
Esi_1517_0001