Ec-00_002160.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_002160.1
Unique NameEc-00_002160.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length157
Homology
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 1.870e-99
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0
Query:    1 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTIT+GFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  409 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 564          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 258 bits (660), Expect = 2.710e-77
Identity = 127/155 (81.94%), Postives = 137/155 (88.39%), Query Frame = 0
Query:    2 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV+DPS++DDKDYYGNKRLE AGQLISLLFEDLFKRFN +LKR AD  L+K N A  +DI   L GS  IT GF HAIS+GNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  382 TVLDPSSLDDKDYYGNKRLESAGQLISLLFEDLFKRFNGDLKRYADTCLAKQNHATPWDISGMLAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 536          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 254 bits (648), Expect = 8.160e-77
Identity = 124/155 (80.00%), Postives = 139/155 (89.68%), Query Frame = 0
Query:    2 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV D S +DDKDYYGNKR+ELAG L+SLLFEDLFKRFNS+LKR ADMVLSKPNRA  FDI KF+ G T IT GF HAIS+G+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  132 TVQDRSLLDDKDYYGNKRIELAGSLLSLLFEDLFKRFNSDLKRQADMVLSKPNRAGGFDIVKFIRGDT-ITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 285          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 251 bits (640), Expect = 6.480e-75
Identity = 122/155 (78.71%), Postives = 137/155 (88.39%), Query Frame = 0
Query:    2 TVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            TV D S +DDKDYYGNKRLELAG LISLLFEDLFKRFNS+LKR  DM+LSKPNRA  FD+ KF+   T IT GF HAIS+G+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  237 TVRDRSLLDDKDYYGNKRLELAGSLISLLFEDLFKRFNSDLKRQVDMILSKPNRAGGFDVMKFMRADT-ITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 390          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A7S2WKY6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKY6_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.000e-74
Identity = 115/147 (78.23%), Postives = 129/147 (87.76%), Query Frame = 0
Query:   10 DDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            DDKDYYGNKRLELAG L+SLLFEDLFK FN +LKR AD VLSK NRA AFD+ K +  S TIT G   AIS+GNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   88 DDKDYYGNKRLELAGNLLSLLFEDLFKHFNRDLKRQADQVLSKANRAQAFDVIKCIR-SDTITMGMVMAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 233          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A7S0RUB9_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RUB9_9CHLO)

HSP 1 Score: 238 bits (606), Expect = 4.620e-74
Identity = 114/156 (73.08%), Postives = 135/156 (86.54%), Query Frame = 0
Query:    1 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
              V+DPS VDDKDYYGNKRLELAGQL++LLFEDLFKR N++L++  D+ LSK NRA  FDI K +    T+++G  HAISSGNW +KRF+++R+GVTQVLSRLSFISSLGMMTR+ SQF+K RKVSGPRALQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   21 QAVMDPSKVDDKDYYGNKRLELAGQLLALLFEDLFKRLNADLRKQVDIALSKANRATQFDIVKCIR-QDTLSHGLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISSLGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNL 175          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A7S3PBU7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU7_9STRA)

HSP 1 Score: 233 bits (593), Expect = 7.010e-74
Identity = 112/148 (75.68%), Postives = 132/148 (89.19%), Query Frame = 0
Query:    9 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            +DDKDYYGNKRLELAG L+SLLFEDLFK F+ +LKR AD+VLSKPN A AFD+ K +   T ITNG  +AI++GNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  105 LDDKDYYGNKRLELAGNLLSLLFEDLFKTFSKDLKRQADLVLSKPNLAQAFDVTKTIRPDT-ITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 251          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A2G8KFE2_STIJA (DNA-directed RNA polymerase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KFE2_STIJA)

HSP 1 Score: 231 bits (589), Expect = 8.070e-74
Identity = 112/152 (73.68%), Postives = 131/152 (86.18%), Query Frame = 0
Query:    5 DPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            D   VDD+DYYGNKRLELAGQLISLLFEDLFK+FNSELK+ AD ++ KP+RAA FD+ K +     ITNG   AIS+GNW LKRFK++R GVTQ+LSRLS+IS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   81 DSFKVDDRDYYGNKRLELAGQLISLLFEDLFKKFNSELKKIADQIIPKPSRAALFDVVKHMR-QDKITNGLNTAISTGNWSLKRFKMERAGVTQILSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 231          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A059LAC5_9CHLO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LAC5_9CHLO)

HSP 1 Score: 226 bits (577), Expect = 1.030e-73
Identity = 111/153 (72.55%), Postives = 133/153 (86.93%), Query Frame = 0
Query:    4 IDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            +DP+ VD++DYYGNKRLELAG L++LLFEDLFKR N++L+R A+  LSK +RA AFD  K L  S T+T G  HA+SSGNW ++RF+++R+GVTQVLSRLSFIS+LGMMTRV SQF+K RKVSGPRALQPSQWGM+CPADTPEGESCGLVKNL
Sbjct:    4 LDPTLVDNRDYYGNKRLELAGGLLALLFEDLFKRMNADLRRAAEAALSKASRANAFDAIKVLR-SDTLTYGLEHALSSGNWNIRRFRMERRGVTQVLSRLSFISALGMMTRVTSQFEKTRKVSGPRALQPSQWGMVCPADTPEGESCGLVKNL 155          
BLAST of Ec-00_002160.1 vs. uniprot
Match: A0A822DRV6_9NEOB (DNA-directed RNA polymerase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822DRV6_9NEOB)

HSP 1 Score: 228 bits (582), Expect = 1.130e-73
Identity = 113/148 (76.35%), Postives = 130/148 (87.84%), Query Frame = 0
Query:    9 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 156
            VDD+DYYGNKRLELAGQL+SLLFEDLFK+FNSE+K+ AD V+ K  RAA FD+ K +     ITNG  +AIS+GNW LKRFK+DRQGVTQVLSRLSFIS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   14 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMR-QDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 159          
The following BLAST results are available for this feature:
BLAST of Ec-00_002160.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE1.870e-9999.36DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA2.710e-7781.94DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A482SPL4_9ARCH8.160e-7780.00DNA-directed RNA polymerase subunit beta n=1 Tax=a... [more]
A0A7S3H3I2_9STRA6.480e-7578.71DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S2WKY6_9STRA2.000e-7478.23DNA-directed RNA polymerase (Fragment) n=2 Tax=Euc... [more]
A0A7S0RUB9_9CHLO4.620e-7473.08DNA-directed RNA polymerase (Fragment) n=1 Tax=Pyr... [more]
A0A7S3PBU7_9STRA7.010e-7475.68DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
A0A2G8KFE2_STIJA8.070e-7473.68DNA-directed RNA polymerase n=1 Tax=Stichopus japo... [more]
A0A059LAC5_9CHLO1.030e-7372.55DNA-directed RNA polymerase (Fragment) n=1 Tax=Hel... [more]
A0A822DRV6_9NEOB1.130e-7376.35DNA-directed RNA polymerase n=1 Tax=Ranitomeya imi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 98..156
e-value: 1.9E-19
score: 69.6
NoneNo IPR availableGENE3D3.90.1100.10coord: 3..157
e-value: 8.5E-35
score: 122.4
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 3..156
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..156
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2468640..2470655 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002160.1Ec-00_002160.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 2468640..2470720 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_002160.1 ID=Ec-00_002160.1|Name=Ec-00_002160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=157bp
MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVL
SKPNRAAAFDIGKFLEGSTTITNGFTHAISSGNWVLKRFKVDRQGVTQVL
SRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESC
GLVKNLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007645RNA_pol_Rpb2_3
IPR015712DNA-dir_RNA_pol_su2