Ec-sdr_f_000220.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-sdr_f_000220.1
Unique NameEc-sdr_f_000220.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length254
Homology
The following BLAST results are available for this feature:
BLAST of Ec-sdr_f_000220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sdr_fcontigsdr_f:831470..834430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length762
Hectar predicted targeting categoryother localisation
Gene idEc-sdr_f_000220.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000220Ec-sdr_f_000220Ectocarpus species7 Ec32 male_plus_femaleSDRgenesdr_f 831470..834430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000220.1Ec-sdr_f_000220.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidesdr_f 831470..834430 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000220.1.5Ec-sdr_f_000220.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 831470..831665 -
Ec-sdr_f_000220.1.4Ec-sdr_f_000220.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 831900..832051 -
Ec-sdr_f_000220.1.3Ec-sdr_f_000220.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 832436..832601 -
Ec-sdr_f_000220.1.2Ec-sdr_f_000220.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 832798..832847 -
Ec-sdr_f_000220.1.1Ec-sdr_f_000220.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 834233..834430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000220.1CDS:Ec-sdr_f_000220.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSsdr_f 831470..831665 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-sdr_f_000220.1 ID=Ec-sdr_f_000220.1|Name=Ec-sdr_f_000220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=254bp
MQATNAPTQLVEQRAWCWPEQNKLSEAFATAWCFLSDTMLLERPVVSTVV
SAAVCIALASGLADMDVTYSATSTLSSQGTDRSLHRRNADEVAQLFPSSP
RFSQILFTTPEPNYPSHEENTNVLKEEIFDEIWSIAEKVALIEAGLKNES
YDSLCYRHSTNGRCASYGVLSFWDGDEALYRSAVADNQSLRIGLSSETFL
DGTPVPRDLVFGDYSLVKDEARCALHEMVSWSLYCQHGILETTFRWASHV
LAS*
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spliced messenger RNA

>Ec-sdr_f_000220.1 ID=Ec-sdr_f_000220.1|Name=Ec-sdr_f_000220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=762bp|location=Sequence derived from alignment at sdr_f:831470..834430- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCAACAAACGCCCCAACACAACTTGTCGAGCAGCGGGCGTGGTG
CTGGCCAGAGCAGAACAAGCTATCGGAAGCATTCGCCACAGCATGGTGTT
TTCTATCCGATACCATGTTACTTGAGCGGCCTGTAGTGTCGACTGTGGTG
AGCGCTGCGGTATGCATCGCCCTTGCGTCGGGGCTGGCGGATATGGATGT
GACCTACAGCGCCACAAGCACGCTAAGCTCACAAGGCACTGACCGCAGTC
TCCACAGGCGGAATGCAGATGAGGTGGCGCAGCTTTTCCCGTCCAGCCCG
CGTTTCAGTCAGATCTTGTTTACCACGCCCGAGCCCAACTACCCCAGCCA
CGAAGAAAATACTAACGTGCTGAAAGAGGAAATTTTCGACGAAATTTGGA
GCATCGCCGAGAAGGTGGCACTTATTGAGGCCGGGCTCAAGAACGAGAGC
TATGATAGCCTGTGCTACCGCCACTCTACAAATGGGCGCTGTGCCTCATA
CGGCGTGCTCTCATTTTGGGACGGGGACGAGGCTTTATATCGCAGTGCTG
TGGCGGATAACCAAAGTCTGCGAATCGGGCTTTCCTCCGAAACATTTCTT
GACGGTACCCCTGTCCCGCGTGATCTTGTATTTGGGGACTACTCACTCGT
CAAAGACGAGGCAAGGTGCGCTTTGCATGAAATGGTCAGTTGGTCGTTAT
ATTGCCAACATGGCATATTGGAAACAACATTCAGATGGGCGTCACATGTG
CTTGCTTCCTGA
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protein sequence of Ec-sdr_f_000220.1

>Ec-sdr_f_000220.1 ID=Ec-sdr_f_000220.1|Name=Ec-sdr_f_000220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=254bp
MQATNAPTQLVEQRAWCWPEQNKLSEAFATAWCFLSDTMLLERPVVSTVV
SAAVCIALASGLADMDVTYSATSTLSSQGTDRSLHRRNADEVAQLFPSSP
RFSQILFTTPEPNYPSHEENTNVLKEEIFDEIWSIAEKVALIEAGLKNES
YDSLCYRHSTNGRCASYGVLSFWDGDEALYRSAVADNQSLRIGLSSETFL
DGTPVPRDLVFGDYSLVKDEARCALHEMVSWSLYCQHGILETTFRWASHV
LAS*
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mRNA from alignment at sdr_f:831470..834430-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-sdr_f_000220.1 ID=Ec-sdr_f_000220.1|Name=Ec-sdr_f_000220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2961bp|location=Sequence derived from alignment at sdr_f:831470..834430- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGGCAACAAACGCCCCAACACAACTTGTCGAGCAGCGGGCGTGGTG
CTGGCCAGAGCAGAACAAGCTATCGGAAGCATTCGCCACAGCATGGTGTT
TTCTATCCGATACCATGTTACTTGAGCGGCCTGTAGTGTCGACTGTGGTG
AGCGCTGCGGTATGCATCGCCCTTGCGTCGGGGCTGGCGGATATGGATGT
AAGTGCATTCCTTGTCTTCATACTCCGTACGTAAGGGTTGAGTTGCGTGC
GAAGGAGCGCGAGGTATTAGCACTCGTTCCCTCGTTTGCTTTGTTTTATT
TTTGCTCACGTGCACGATTGAGTAGTGATAGCCTTTAACAAGGTATTCGA
ATGTGTTTAGAGAAGTCTCACAACGAATTTTCGCCTTCGTTTCTTACCAA
CTGACGATTTCCCTGGTCTGGTACCGTAGGCCCAAGAAGACGTAAGCTGT
CTCTCCCGCACCAATTCGGACCGAAACGACCCTGGGCAAGGCCTGTGAAA
GCCCAACGAATACTAGGTTGTTTACTGACGGAGTAGGTACCCTGGCTAAT
GGCCGGCTAGGAAGGTTGTTTACTGACGGGGTTTCGGGTACTGAGTCAGT
ATTTTAACCCGTAGTGAGCGTCGCTGGTAGTGAAAATGCTACACATAATC
GCGACATTCGCACGCGGTTTCTGAGTCACATTCGCGCGAGTGACGTCACT
GCATTGGGAATGGATGCTTACACCCAACCAGTTTTTGTGTGGTCTACTTT
AAAGACGAGTGATCAGATACGCAAGGTGCGCTACGTGCCAAAACCCCTCT
GAGCTGCTCGTCGATTGCCCATTGGGGCAACTGACCACAAGGATAGGTTT
GTCGCCTCGAGCGGACCATTGGGGAAAGTGACTAGACGAAACAGACAGTA
ACTCTTTCATGATCCTGATTAGAATGAGTGCTTCTGGTTGGCATTACACT
TACCAATAGCACCACCGGACAGGTACCAAAAGCCAACAAAAATTGCCTGA
ATCGGTGAGGTGTAACTGTCACCATGTATGGTAAATGCTTGTTCAAATTG
ACATTTCGGACGCATTTCAAACCTTGGCGGCCAGCGATGGCCGTTTGTTG
TCGGACAGCGTTGAATGAGGGACAGTGTATTCCGCCTGCCGTGATTGAGT
GGGGGAGATGCCGCACAGGAATGAACCAAGGCGACCTGTTCGTAAAGTTG
TTACCCGCCAGAGAGATACGAATTTCGCACAAATGTTGTCACCGTGCTGG
GGAAAGGTGTGCGGTCCGGGTTCCACGCGTTGCTGGAGCTGTTGTTTGTG
GGAGCCGGGGTGCCGACTCTCGCTAGCAGAATAGCTATCTCGAGTGCATG
TGGAAATATTTGTTGGTTTGTAGCGTATCGGCTCCGTGCGTTGGAAGTTC
TCGTTCGGTTTTAGTCTGCTTCGTTGTATTTTGTCGGTGATGATGCATTG
AGAGTTCCTCTCCTTTTTCGACACTGGTCCCCCCCGTCTATCAATGACGC
AGAGCGAAGTCACTTGCACCGAAATAAGATGAAGTAAAATTGAAAGCACG
AATTTTTGACTAACTTACCAACCCTTCTAGCAGGTGACCTACAGCGCCAC
AAGCACGCTAAGCTCACAAGGCACTGACCGCAGGTGATGTGCGTCACGGA
AACAGTTGTCACGATGATCCATAGGAAGTGAGTTTCCCAAAATTTCATCA
AGCTTTGTCGGACGACTTTTCAGTGCGGTCCTGCCTTGTAAACCCTCTCT
CGATCGAACAAGGTCGGCATAACTTCGATAGTCTCATTTCCCCCATCTGT
ACTTTTTGGCCTTGGATGACACCCGCTAGTCTCCACAGGCGGAATGCAGA
TGAGGTGGCGCAGCTTTTCCCGTCCAGCCCGCGTTTCAGTCAGATCTTGT
TTACCACGCCCGAGCCCAACTACCCCAGCCACGAAGAAAATACTAACGTG
CTGAAAGAGGAAATTTTCGACGAAATTTGGAGCATCGCCGAGAAGGTCCG
TATCCCATCGTTGAAGAAACACATAGTACTGCTGATTTGAACGATTCTAC
GAATTCCTTTTGGTGTAGCCCTGGTGAACATTGATATTGTCTTCGAGGCG
TAGGCGTCAGAACTGCGTACCGCAGGAGAGACGCTTAGGAGGAACATTAT
TTCGAACTTCAGGTCTGCATGGTTTCCGCAAGCCCAGAAAGCAAGCATGC
ATCTTGCCCATGCGTTCATGCATGAGTGTCGTGCGGAGACGGAAAGGCAC
ACGCATGAACTACGAGGACTCATTGCCTATCAGTAACGGGTATGGTGCGT
GCCCACGGCAAATCATCTCTGTATTCTCACGCGTTCAGTTCAATGTTCCG
AAATCTTTTGTCGTTCGTTGATCCTATAGGTGGCACTTATTGAGGCCGGG
CTCAAGAACGAGAGCTATGATAGCCTGTGCTACCGCCACTCTACAAATGG
GCGCTGTGCCTCATACGGCGTGCTCTCATTTTGGGACGGGGACGAGGCTT
TATATCGCAGTGCTGTGGCGGATAACCAAAGGTGATATTGGGCCGCTGTT
GTCTGACATACTATGACCCGTCGAACGTGCGTAAATGGTGCGCCTTGTTA
CACTGTCCTCTTTGTTGTCTCCTACATGTATTGGTTTTGTTTTCGCGTTT
AGGCCACATTACCCTGTCTGGTGGCGTGACATCAGCGTAAACGGGAAATT
TCTCTGCCCGAAACACATCGTTACTGACACCGTCATCCCTCCTTCTTGTT
CGTGCCTACCTGCAGTCTGCGAATCGGGCTTTCCTCCGAAACATTTCTTG
ACGGTACCCCTGTCCCGCGTGATCTTGTATTTGGGGACTACTCACTCGTC
AAAGACGAGGCAAGGTGCGCTTTGCATGAAATGGTCAGTTGGTCGTTATA
TTGCCAACATGGCATATTGGAAACAACATTCAGATGGGCGTCACATGTGC
TTGCTTCCTGA
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Coding sequence (CDS) from alignment at sdr_f:831470..834430-

>Ec-sdr_f_000220.1 ID=Ec-sdr_f_000220.1|Name=Ec-sdr_f_000220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=762bp|location=Sequence derived from alignment at sdr_f:831470..834430- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGGCAACAAACGCCCCAACACAACTTGTCGAGCAGCGGGCGTGGTG
CTGGCCAGAGCAGAACAAGCTATCGGAAGCATTCGCCACAGCATGGTGTT
TTCTATCCGATACCATGTTACTTGAGCGGCCTGTAGTGTCGACTGTGGTG
AGCGCTGCGGTATGCATCGCCCTTGCGTCGGGGCTGGCGGATATGGATGT
GACCTACAGCGCCACAAGCACGCTAAGCTCACAAGGCACTGACCGCAGTC
TCCACAGGCGGAATGCAGATGAGGTGGCGCAGCTTTTCCCGTCCAGCCCG
CGTTTCAGTCAGATCTTGTTTACCACGCCCGAGCCCAACTACCCCAGCCA
CGAAGAAAATACTAACGTGCTGAAAGAGGAAATTTTCGACGAAATTTGGA
GCATCGCCGAGAAGGTGGCACTTATTGAGGCCGGGCTCAAGAACGAGAGC
TATGATAGCCTGTGCTACCGCCACTCTACAAATGGGCGCTGTGCCTCATA
CGGCGTGCTCTCATTTTGGGACGGGGACGAGGCTTTATATCGCAGTGCTG
TGGCGGATAACCAAAGTCTGCGAATCGGGCTTTCCTCCGAAACATTTCTT
GACGGTACCCCTGTCCCGCGTGATCTTGTATTTGGGGACTACTCACTCGT
CAAAGACGAGGCAAGGTGCGCTTTGCATGAAATGGTCAGTTGGTCGTTAT
ATTGCCAACATGGCATATTGGAAACAACATTCAGATGGGCGTCACATGTG
CTTGCTTCCTGA
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Synonyms
The feature 'Ec-sdr_f_000220.1' has the following synonyms
Synonym
FeV4scaf58_1