Ec-28_003560.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003560.1
Unique NameEc-28_003560.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length52
Homology
The following BLAST results are available for this feature:
BLAST of Ec-28_003560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3366207..3369902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length156
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-28_003560.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003560Ec-28_003560Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3365755..3369949 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003560.1.3Ec-28_003560.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3366207..3366212 -
Ec-28_003560.1.2Ec-28_003560.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3367871..3367984 -
Ec-28_003560.1.1Ec-28_003560.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3369867..3369902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003560.1CDS:Ec-28_003560.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3366207..3366212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003560.1Ec-28_003560.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3366207..3369902 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003560.1 ID=Ec-28_003560.1|Name=Ec-28_003560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=52bp
MFNARALIRSGPEAAAALTTRYQEQTSSNNNASDAEQQLRQPISASEVDE
G*
back to top

spliced messenger RNA

>Ec-28_003560.1 ID=Ec-28_003560.1|Name=Ec-28_003560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=156bp|location=Sequence derived from alignment at chr_28:3366207..3369902- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAACGCACGGGCGCTGATTAGGAGCGGGCCGGAGGCTGCCGCGGC
ACTGACAACGAGGTACCAGGAGCAGACAAGCAGCAACAACAATGCGTCGG
ACGCGGAGCAGCAACTCCGACAGCCCATCTCGGCCTCCGAAGTAGACGAG
GGATAG
back to top

protein sequence of Ec-28_003560.1

>Ec-28_003560.1 ID=Ec-28_003560.1|Name=Ec-28_003560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=52bp
MFNARALIRSGPEAAAALTTRYQEQTSSNNNASDAEQQLRQPISASEVDE
G*
back to top

mRNA from alignment at chr_28:3366207..3369902-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003560.1 ID=Ec-28_003560.1|Name=Ec-28_003560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3696bp|location=Sequence derived from alignment at chr_28:3366207..3369902- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTCAACGCACGGGCGCTGATTAGGAGCGGGCCGGTGAGTAACCCTGC
AGTCGTGCACATCCCAAGGACAACAAGGATTTCTTAGCTTTTTTTTCTCG
ATCCCTCCCCCCACTTTCCACAGCAGGCTGAGATTTGACTGAGCGGCAGT
TGCAGGGTGTGCCGCATGTACGACGTGCCATGGACGATCGGGGAATGTTT
GGGGCAATGTGCGTCAAGTTCTCTTGGAGGGGTGTCACCGAACGTCAAAT
CTGTGTCTGTTGGATGGAGCTTTTGCGAAGTGATCAGCCTCTAAATTCGT
ACCCGCACATACGCACCCCACCAAGCTGCAGTTTTCTCGTTCCAATCATC
CTTTTCAGTGATCCTTTTGCTTTGCTCATCCTGATGACTCGAGTCTCTCG
TTGAAGCCAAAGCACAAGCGTGTCGACGATCTCAACCTTCAGCAGATCAA
ACCCTCTATCCACCCTCGACTTCCACGGAACGACAGATCTGTAGCAAGAG
AGAAGGGTGCGCTTGAAGACGATGACATCATGAAATTTCACTTCAACTTA
GACAAGGCTTTTTTTAGACTGTGAACTGCTGTAGGCTGTGGCGCACAGAA
ATTCATGTACACATCGAACAGCCGAGGGAAAGAGGAGGAGAACGCTGTGG
ATCAAACATGCCAGTTGTGGTGTGTCGTGTGTGATGCCCCGCCAACTGCT
GTGGCTTGCGATCAACAACGGCGTTGCCCCAAGTTTTTTCTCTTCTTGTG
ATGGGCTCGCGGTCATCCACATCCTCCGCAGCAATTCCACGGGAACCCGA
ACAACACGTTTTCTCCTCGCTCCTCACTGCTGTCTCTCGAAGTGCGTACC
ACCAGTGTTGTCTGTCGTTGGAGCACGCTCTTTCGGCGCCCTCGTTGTAC
GTATGTTGCCCAGCTACGCACGTACTCCACCCACACTAAAGTACAAACAC
ACCCGTTTCGAGATTTGGAGGCATGAGGCGAATCTCAGGAGTGAACCGTT
CGGTGAACGTCCCGATGTATCATATTTTCAGCAGTTTTATGGGTACCACC
CGGCTCCCGAAACACCCACACACAGCAGCAAATAGTTGGGTGGAGCTGGC
TTGATTGTTGAAACGGGGAACGCGAAGCTTAAGCTCGCCACCGTCGCCTC
GCCTGGGAATCCCAAGACCTCATCCGGCCGTTCGTCGATGTCAAACATGC
AATATATTGAATAAACACCAAACTTTCGTGAGTGGGTTCTCTCTCGACCC
CATAAAAGAGAGGGCAGAGAGTCCCATCTTGTCGTCTCCCTGACACTGCA
GGATACCGGTAGTCGTTGAACGAGGAAGAGCTAAATAGATACCGCCGTTG
TCGGGATTGTGCTCGATCTTCTATGTTCTCTGCAGCAGCGAAAGAGTCAA
CGTGTGGCCAACAGCACGTGACGGCGCAACCGCGGTGGCCTACAGTAGGT
ACACGACGGACAGCAGGGTCTTTTGCGGCGCAACAAACACGTGTGCTGTG
TCCGGAATGTATCAGCAAGATTTTAAGCTGCAACATGGAAGGCGAAGCTG
CTCTCTCAGATACAGTGCGGACGCCTGATGTATTCATGGTACATAACACC
GCGTTTCGAAATATACTCTTAGTTCCAGAGACCCCCCCCCCCCCTACCCC
GTGCGACTCGCCGAATACCTCACGGTGCGCTTGGTGATGTGAGAGCCTGG
TCCGGTGAGAACCCGGAGTGCTCCGCCCCGGCTTTGTAGGAATGCGAGGT
CAATGGTCTAACGTGTACGGCATTCACGACTATGAGAAATGAGTACACCC
CCCCCTAGCCCGTGGTCCACGCATCGAATCGAAGGCCAGCAAGCCTAGTA
TGCATGGTGATGCAATGTTTGGCGCTTGACTCGTCCATGCGATGCCGTCA
TGTCTCTCATCGCAACAGGAGGCTGCCGCGGCACTGACAACGAGGTACCA
GGAGCAGACAAGCAGCAACAACAATGCGTCGGACGCGGAGCAGCAACTCC
GACAGCCCATCTCGGCCTCCGAAGTAGACGAGGCTAGCCAGATGATCTTC
CAGAGGGCCCCCGCCACCCCTTCTGGTCAGTCTAGTGCTTGAGGCAGCTT
AGTTTTTCAAAAGTTGCATCACGTTGGAGTCGACGAATCCGGCATGTCCT
TCGCATGCCCACGTGTGTATGTCGTTTCGTCCGGTAGGGATGTAGGGATG
CAAGGCTTATTCGCTTGACAATCATTTGCATTGTGAGTTCATGAGCACCC
CACACACACTGCGCACCTCTGATCGAAAGCCACCCCTCAGCCTGCGGCGC
CGCCTACGCTTTTGTGAGGTTGAAGTGGTTTCCGTGCAGTCCACGCTGCC
CCTGAAGCTGACACAATCGGTTAAGGATGATTTCGCCGTTTGATTGGTAA
CTCCGTGCTATCTTGCCCAGCACATGAAACCTGATTCCGTACTACTGTGG
AAAGTTTAGTGTGTGTGCTCGGTCCCATCCGTTCATCCCCTCTCTTGTCG
GTGTTTGTTGCTCGGGCTTTCGGGTGTTGGGTGAACGGCTCGTGTCGTGT
CATAGGGGTCCCTTTCTTGTTGGTTCCCTTCTCTTCTCTCTTTCTTCTCC
TCCTCTGTGGGTGTCGTTCGTTTCAAAGCCTTGGATGGGAACGAAGGTAG
CGTTGGACTTGAAACACAACACGCAGTACATTGGGTTGCGAATTCGAAGA
TTTTCTGTGAAAGATGGATGGAAGCCGCGATGCTTCGTACATCTTTCCTG
TGTTGGACTACCGTACACGACACAAGATAACACANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATTTTTTAACAGC
AGAAAGGGTTCAAGGCCCGAAAAAGGGGGGGTTGAAGGGGCTTTTTTGAA
AGCTTTTCGAAAAAGCATTGTTTTTTTTTTTGCCCCCTTTTTTTTGGGGG
GTTTTTGGGTTTTAAAAATTGGTCCCGGGGGTTTTTTTTTTTTTTTTTTT
TTCGGTCCCCGGGTTTTTTTCCCCTTTGCCCTTCCCAGGTTTTTTTTTTT
TCCAATTTTTCCCCCCGGTGCCAGATGTTGGGTTGTTTTTGGAAGGCAGT
GTTTTCCCCAGATTTTGGGGGTTGGGGGTTTGTTTTTTTTCCAATTTTTT
TCTTGCAACCCATACCTTTTTCCCTTTAACCTTTTTTGACGTTTTTTTTT
GCCCCCCCCCCCCCCCCGTCAAGCAGCTGGAAACGGTGCAGATGGCAGCG
GCCAAGAAAATACTAGGATGTTCAAGCACAACGAGCAACACTGTATTGAG
AGCAGAATTGGGAATGTACTCTCTTAAAACAAAGAGAGACATGCAGAAGT
TGAAGTGGCAGTACAAGGTAAGTAGAATGTCGGACGATAGACTACCAGCC
ATGGTTGACGAGGCAGCTTGGGGAAAAGCGACTCCAGGGAAGAAGGGAAT
CAGATGGGACAAGGTGGTAGAGAAGGTTTGGAAGGAGATAGGAGACGAGG
AGGGAGACGTTGGACACGGAAGGGGTTCGGGGGGTTCAAGACGAAAGTCA
AGGAGATGCTAGAGAGTAGGGAGGAGACAACCCTTCGCAAGAAGGTACGA
AGCGAAGACCACTTGGAGATATACGGGAAGTTGAAAGAAGGGATAG
back to top

Coding sequence (CDS) from alignment at chr_28:3366207..3369902-

>Ec-28_003560.1 ID=Ec-28_003560.1|Name=Ec-28_003560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=156bp|location=Sequence derived from alignment at chr_28:3366207..3369902- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTCAACGCACGGGCGCTGATTAGGAGCGGGCCGGAGGCTGCCGCGGC
ACTGACAACGAGGTACCAGGAGCAGACAAGCAGCAACAACAATGCGTCGG
ACGCGGAGCAGCAACTCCGACAGCCCATCTCGGCCTCCGAAGTAGACGAG
GGATAG
back to top
Synonyms
The feature 'Ec-28_003560.1' has the following synonyms
Synonym
Esi009_0253
Esi_009_0253