Ec-28_003530.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003530.1
Unique NameEc-28_003530.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length157
Homology
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BLAST of Ec-28_003530.1 vs. uniprot
Match: D8LTM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM5_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 6.470e-108
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 
Query:    1 MLRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV 468
            MLRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV
Sbjct:    1 MLRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV 156
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BLAST of Ec-28_003530.1 vs. uniprot
Match: A0A7S0L9D0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9D0_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 1.820e-17
Identity = 41/114 (35.96%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:   79 LLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVT----GVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSL 408
            +LL++     D+  L+QW+ R PF +ALPVQP  ++        G+D+ FR+KPT+++ S +GGL F +     GE   V     L++ R+S GQ I K F+ER++++ +++ L
Sbjct:   28 VLLKVTLARCDSHGLQQWLLRRPFASALPVQPMLVLPIKDPPPLGIDLTFRRKPTMDKSSSEGGLRFAVSAPGDGEAGVVDGDGILLVTRVSSGQSIGKGFSERVLIEMLLREL 141
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BLAST of Ec-28_003530.1 vs. uniprot
Match: A0A7S0P2Y7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P2Y7_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 6.070e-16
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 1 
Query:   79 LLLRMDFEDADAEELRQWIRRYPFGTALPVQPF---SLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSL 408
            +LL++     +++ L+ W+RR PF   LP+QP    +L     GVDV FR+KP+ E+G+QDGG+   I     G +       +L++ RISEGQ   K F+ER + +++V+ L
Sbjct:   36 VLLQVRLSSVNSDALQDWLRRRPFAAVLPIQPMLVQALQPPQQGVDVTFRRKPSSEKGAQDGGIRIAI-----GHD-------SLLVTRISEGQYTSKAFSERALCRSIVRDL 136
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BLAST of Ec-28_003530.1 vs. uniprot
Match: A0A7S2CIM1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIM1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.230e-11
Identity = 39/140 (27.86%), Postives = 71/140 (50.71%), Query Frame = 1 
Query:   85 LRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVE------------TVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV 468
            + +  E    +EL++W++ YP+   LPVQP  LV+            T   + V FR+KPT  +G  DGG+  T+   V   + D+     L +R +SEG  + K  +++++ K++++ L      P   + +VLH  ++
Sbjct:    8 VALSSEAGGIDELKRWLKAYPYPAVLPVQPM-LVDREWSCDNRPDEPTAETLRVTFRRKPTDAKGPVDGGIEITLVTGVDAADHDL----ALTLRALSEGNYVDKSLSQKLLAKSIIRDLP---RVPKVSITSVLHSAML 139
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BLAST of Ec-28_003530.1 vs. uniprot
Match: A0A7S4IU80_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IU80_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.950e-8
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   43 GIGGGGGEESNALLLRMDF-------------EDADAEELRQWIRRYPFGTALPVQPFSLVETVTG--VDVVFRKKPTLERGSQDGGLCFTI 273
            G  G  G++ + LL R+               +DA  E++R ++R +PF   LPVQP + + T  G  V V F +K T E+GS DGG+ F +
Sbjct:   24 GFDGAEGDDDDVLLXRLTLSVXXXXXXXXXXXKDAILEDVRSYVRSFPFAAVLPVQPLTYIPTADGGGVKVTFLRKKTKEKGSVDGGIDFDV 115
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BLAST of Ec-28_003530.1 vs. uniprot
Match: A0A7S1VGN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VGN9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.400e-5
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:   67 ESNALLLRM--------DFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTG-VDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQ 351
            ++  +LL+M        D EDA A+ ++ + + +PF   LPVQP   + T  G VDV+F +K T E+GS DGG+ F +   V G++  V     + ++R S+GQ
Sbjct:   53 DNEEILLKMNLSVEPGADPEDALAK-VQAYTQAFPFAAVLPVQPLQYLPTHEGGVDVLFLRKKTKEKGSVDGGIRFFVS-LVDGDQTTV----DVEVKRNSKGQ 150
The following BLAST results are available for this feature:
BLAST of Ec-28_003530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LTM5_ECTSI6.470e-108100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0L9D0_9EUKA1.820e-1735.96Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0P2Y7_9EUKA6.070e-1637.17Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2CIM1_9STRA1.230e-1127.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4IU80_9STRA2.950e-834.78Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1VGN9_9STRA1.400e-535.58Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3346888..3349175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.2
Seed ortholog evalue2.7e-82
Seed eggNOG ortholog2880.D8LTM5
Length471
Hectar predicted targeting categoryother localisation
Gene idEc-28_003530.1
EggNOG OGs2EA7H@1,2SGGG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003530Ec-28_003530Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3346513..3349661 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003530.1.1Ec-28_003530.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3346888..3347027 +
Ec-28_003530.1.2Ec-28_003530.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3347667..3347747 +
Ec-28_003530.1.3Ec-28_003530.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3348584..3348725 +
Ec-28_003530.1.4Ec-28_003530.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3349068..3349175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003530.1CDS:Ec-28_003530.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3346888..3347027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003530.1Ec-28_003530.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3346888..3349175 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003530.1 ID=Ec-28_003530.1|Name=Ec-28_003530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=157bp
MLRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPF
GTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEI
DVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTV
LHEGLV*
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spliced messenger RNA

>Ec-28_003530.1 ID=Ec-28_003530.1|Name=Ec-28_003530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=471bp|location=Sequence derived from alignment at chr_28:3346888..3349175+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAGGGGTCGGCATACGCGTATGACATCATTCGGAGCGGGCATAGG
CGGTGGAGGGGGTGAGGAGAGCAACGCGCTCCTCCTGAGGATGGACTTCG
AGGATGCAGACGCGGAAGAATTGCGCCAGTGGATTCGGAGATACCCGTTT
GGGACGGCCCTTCCCGTGCAGCCGTTCTCTCTGGTGGAGACGGTGACTGG
CGTGGATGTCGTGTTCAGAAAAAAGCCGACTCTCGAAAGAGGCTCGCAAG
ACGGGGGGCTTTGCTTCACCATTGAGGACAAGGTCTCCGGGGAAGAAATC
GACGTGCTCACGGGCCCGACGCTGATCATGCGGCGCATCTCCGAAGGGCA
GGAAATTCGGAAGATGTTCGCGGAACGCATCGTGGTGAAGGCGGTTGTCA
AGTCCTTGGCGGGGGACGGCGCGCCACCTGGGACCAAAGTCCGAACAGTT
CTGCACGAGGGTTTAGTTTAA
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protein sequence of Ec-28_003530.1

>Ec-28_003530.1 ID=Ec-28_003530.1|Name=Ec-28_003530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=157bp
MLRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPF
GTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEI
DVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTV
LHEGLV*
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mRNA from alignment at chr_28:3346888..3349175+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003530.1 ID=Ec-28_003530.1|Name=Ec-28_003530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2288bp|location=Sequence derived from alignment at chr_28:3346888..3349175+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTTAGGGGTCGGCATACGCGTATGACATCATTCGGAGCGGGCATAGG
CGGTGGAGGGGGTGAGGAGAGCAACGCGCTCCTCCTGAGGATGGACTTCG
AGGATGCAGACGCGGAAGAATTGCGCCAGTGGATTCGGAGGTGATGCGGT
GGAGCGCGTGTTGGATCTAGCGTTGTGTGTGCTTCCTTGCACACCGCGGC
CTGAGTCGTACGGGCGATACTTGAACCGCAACATATTTTATTTCGCTGAT
GGGTTGAACGCTCATGTCATCCAGCTATCCAGCTCATTACTTGAGTGTTG
CTGAGTTATTCTGTGCAGTAAAGTTGTTTTTTGTGTGTGTATAACGGCTG
GCTTTGGTTGGCCGCTTTTCATGGGGGGTGGAGACATTCATGGTGTCTGG
CATAGCGAGGAAAAGAAGGCCAGCAGGCTTCGTTCGACTAAACCAGACAG
AAGACTGAAACGACACAGCGTAAACAAGCGTCGAAAGATCTCCATTCCTA
ACCAACAGCAACAACGACAGATTGCCGACGTCACTTTCTGATATGCGTGC
CCTACAGGTAGTTTGACAATACTCCACGACACAGGTGCTCATCCGGATTA
TTGGTGTTCTCCTTTTCAGGCCCCTTTCCCTTCAAAATCTCCTGGCAAAG
AAGGGGTCCATCTAACCTGTATCAAGTCTGACTATATTGTCAATCATACA
GGACATCAATCTAACTTGATCTTTTCAAGTTTTGGCGTTGTGCGCAAGCT
GAACAATCCCCCTATCTTGCGAGCGGCAGATACCCGTTTGGGACGGCCCT
TCCCGTGCAGCCGTTCTCTCTGGTGGAGACGGTGACTGGCGTGGATGTCG
TGTTCAGAAAGTGAGTACAGCAGTGGTTGGGCTTGGTTTTACCACCCCTG
GTGTCAGGAGGGGATGTGGCCAGTGTTAAGGGCAGGTCGCCATTGTCTAT
ATTGCGGCTATTTGTCGGGCTGTAATGGTGCCAGGCGGTTTTGTGGTCGC
TATGCAGGACACGTCGCTAAGCAGAGGCTCAACTTCAACTGTACCGAATC
CACCACTCACTTCTGTAGAGAGAGGTGAACGTGAAGCATAGCAAGTATTG
CGGGTTTCGCTGTAGATATTGATTTTGGGTTTACGTTTTCTGCAGCAATG
CCTGCTGGTACGGCGACTGCTGCAGAGCATCAACCCTGGTCCTCCCTCTC
GCACCTGGATATCGAACGCGCGAAGGATACTTGTTTTGCCTTGGAGTGAA
CCGTTACGGGACGCCTGCAGCATTTGCCCCAGGACTACATGGATTCAGGC
GGAAAAATGTCTTGGTGTTCCCGGGGACAAGAGATCTGTTTCTGTAGTGT
TGTACTGTGAGGAGGCTTTGTAGCGCTAACGACCTGAACCCCTCCGAACA
CGTAGACAAGAGAGAAACATCCATGTCCGCAGAAGACGAAGCATGCTGCC
GAAGATATCCAGGGGGAGTCATGTGGTCTTTAGTTCCAAATGCTTTTCTA
CGCCCCCTATGCTTGTCAGCTAACCCTCCTACTACCTAGTCCTGATGGAA
TTGGGAGACTGCATCAAACATATCACTAGGTACCGTTTAATATCTTCGCG
TTCGTCTGAAGTGACGGCTCCCGAAACGCAAAATACCGCTAGATATGTGC
ACCATCCTACCTTGTTGCTGGTCGCGATCGCATGTCTATACTCCAGAAAG
CCGACTCTCGAAAGAGGCTCGCAAGACGGGGGGCTTTGCTTCACCATTGA
GGACAAGGTCTCCGGGGAAGAAATCGACGTGCTCACGGGCCCGACGCTGA
TCATGCGGCGCATCTCCGAAGGGCAGGAAATTCGGAAGGTGGCCGTTGTG
TGCCAAGATATGGCCTGTCTGGATGCTTGTCAGGGTGCAATCCTAGTATG
CATACCCGTGTTTCAAGGGGGGGTCTATTCTTTAGTATTGTCCCCGGTAA
ATATTATAGTGCGTACACCAAAGTTTGAGTGCCTTGGACGTCGCGGGTGT
GTGGAACCCGCCAATGGTTGGTCCAAATTCGTGTGGCACTCTTAGACGGC
AAATTATTTTCTCCAGTAGATATAAACCTCTGAATTATAATACCTGTATT
CGTTGTTAGCCAATAGCTTGTGCTATTCCCGCAACGCGAGCCTGTTTCGT
TTCCTCCTCTTGGTGATCTACCAACTGCAGATGTTCGCGGAACGCATCGT
GGTGAAGGCGGTTGTCAAGTCCTTGGCGGGGGACGGCGCGCCACCTGGGA
CCAAAGTCCGAACAGTTCTGCACGAGGGTTTAGTTTAA
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Coding sequence (CDS) from alignment at chr_28:3346888..3349175+

>Ec-28_003530.1 ID=Ec-28_003530.1|Name=Ec-28_003530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=471bp|location=Sequence derived from alignment at chr_28:3346888..3349175+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTTAGGGGTCGGCATACGCGTATGACATCATTCGGAGCGGGCATAGG
CGGTGGAGGGGGTGAGGAGAGCAACGCGCTCCTCCTGAGGATGGACTTCG
AGGATGCAGACGCGGAAGAATTGCGCCAGTGGATTCGGAGATACCCGTTT
GGGACGGCCCTTCCCGTGCAGCCGTTCTCTCTGGTGGAGACGGTGACTGG
CGTGGATGTCGTGTTCAGAAAAAAGCCGACTCTCGAAAGAGGCTCGCAAG
ACGGGGGGCTTTGCTTCACCATTGAGGACAAGGTCTCCGGGGAAGAAATC
GACGTGCTCACGGGCCCGACGCTGATCATGCGGCGCATCTCCGAAGGGCA
GGAAATTCGGAAGATGTTCGCGGAACGCATCGTGGTGAAGGCGGTTGTCA
AGTCCTTGGCGGGGGACGGCGCGCCACCTGGGACCAAAGTCCGAACAGTT
CTGCACGAGGGTTTAGTTTAA
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Synonyms
The feature 'Ec-28_003530.1' has the following synonyms
Synonym
Esi0009_0051
Esi_0009_0051